Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004135.1 Hibiscus syriacus cultivar Beakdansim tig00009043_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76728

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1505--1564
20
3.0
20
95
2
102
35
21
18
25
1.96
4772--4825
22
2.5
22
81
0
63
57
5
29
7
1.49
5463--5505
22
2.0
21
86
13
61
41
4
0
53
1.21
5520--5548
14
2.1
14
100
0
58
65
0
13
20
1.26
7579--7659
3
27.0
3
100
0
162
33
33
0
33
1.58
12102--12230
46
2.8
46
86
0
177
25
17
9
48
1.77
12226--13046
82
10.1
82
91
2
1276
31
21
10
35
1.88
12226--13046
245
3.3
246
91
1
1310
31
21
10
35
1.88
13866--13917
22
2.5
22
84
9
74
36
17
17
28
1.92
14273--14463
55
3.5
55
89
3
278
34
11
19
34
1.88
15649--15694
17
2.6
18
96
3
85
26
34
13
26
1.92
17122--17159
19
2.0
19
100
0
76
36
21
0
42
1.53
17850--17893
21
2.1
21
86
0
61
34
15
43
6
1.74
22739--22778
21
1.9
21
85
10
55
35
10
2
52
1.48
24724--24882
63
2.5
62
80
10
171
24
18
25
32
1.97
24834--24879
17
2.6
17
89
3
65
17
17
34
30
1.93
30135--30242
46
2.3
46
90
0
171
26
22
10
40
1.85
30238--31082
82
10.3
82
88
1
1221
31
22
9
36
1.86
30238--31082
245
3.4
246
88
1
1268
31
22
9
36
1.86
34075--34122
22
2.1
23
88
11
73
41
6
16
35
1.74
37162--37248
39
2.2
39
97
0
165
45
8
10
35
1.68
37560--37596
18
2.1
17
90
5
56
8
8
16
67
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40487--40534
21
2.3
21
81
0
60
47
12
37
2
1.53
40993--41253
43
6.1
43
78
4
296
31
21
19
27
1.98
41011--41246
84
2.8
83
84
5
314
33
22
18
25
1.97
42618--42663
19
2.4
20
75
20
53
34
0
0
65
0.93
47034--47076
19
2.4
18
81
11
52
46
2
6
44
1.43
47216--47269
23
2.5
23
82
8
60
24
33
3
38
1.73
47517--47546
15
2.1
15
93
6
53
66
26
0
6
1.16
60291--60323
2
16.5
2
100
0
66
51
0
0
48
1.00
60832--60856
13
1.9
13
100
0
50
56
0
0
44
0.99
62054--62128
31
2.4
30
82
6
87
34
29
22
13
1.92
63190--63238
26
1.9
26
87
4
73
24
10
4
61
1.45
63230--63307
14
5.3
14
73
17
61
25
6
0
67
1.14
64397--64429
17
1.9
17
100
0
66
6
30
21
42
1.77
74837--74867
14
2.2
14
100
0
62
38
12
35
12
1.82
75035--75745
135
5.2
135
90
2
1007
33
24
15
26
1.95
76186--76224
19
2.1
19
95
0
69
17
46
12
23
1.83

Tables:   1

The End!