genome.fa.s4136.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004136.1 Hibiscus syriacus cultivar Beakdansim tig00009044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74431

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1483--1558	30	2.5	30	79	10	75	42	0	6	51	1.28
5604--5632	2	14.5	2	100	0	58	48	0	0	51	1.00
5897--5986	45	2.0	45	95	0	162	41	3	7	47	1.49
5898--5968	22	3.2	22	64	18	56	39	4	7	49	1.49
12410--12460	16	3.4	16	79	15	56	21	0	1	76	0.88
12409--12466	11	5.3	11	78	13	50	20	0	1	77	0.86
13593--13625	2	16.5	2	100	0	66	48	0	0	51	1.00
13677--13722	15	2.9	16	83	9	58	2	2	13	82	0.85
13647--13717	23	3.1	23	81	0	70	8	4	8	78	1.07
13715--13804	5	18.4	5	71	13	53	14	4	6	74	1.18
13725--13793	30	2.3	31	80	16	83	14	4	7	73	1.20
18197--18239	21	2.0	21	90	0	68	32	27	23	16	1.96
18267--18304	20	1.9	20	88	0	58	23	34	31	10	1.89
18785--19000	103	2.1	101	94	1	387	25	13	24	36	1.93
25101--25143	21	2.0	21	86	0	59	34	27	20	16	1.94
25171--25208	20	1.9	20	88	0	58	23	34	31	10	1.89
25820--25871	23	2.3	23	89	0	77	21	30	25	23	1.99
25819--25882	23	2.8	23	76	4	76	21	26	25	26	2.00
36355--36390	18	2.0	18	94	0	63	2	22	0	75	0.94
36526--36580	12	4.4	12	75	22	51	25	1	0	72	0.94
36539--36673	20	6.9	18	67	22	51	16	4	2	76	1.07
36539--36582	20	2.2	20	84	4	54	22	2	0	75	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36625--36714	5	17.2	5	75	13	83	18	3	2	75	1.05
36592--36676	26	3.0	28	74	19	79	15	5	1	77	1.01
37273--37322	19	2.7	19	78	9	59	38	0	2	60	1.09
37274--37352	27	2.9	27	71	17	74	41	1	2	54	1.22
37389--37441	13	3.9	13	88	9	79	49	9	1	39	1.46
37399--37450	15	3.6	15	89	10	90	51	11	0	36	1.38
37389--37450	28	2.2	28	97	0	115	51	9	1	37	1.45
38042--38200	60	2.7	60	78	3	151	35	5	19	38	1.75
40491--40542	20	2.6	20	96	0	95	38	26	13	21	1.90
40533--40630	21	4.8	20	73	10	72	37	21	19	21	1.94
40597--40751	40	3.8	40	82	4	186	37	26	18	18	1.93
40597--40750	20	7.7	20	80	7	168	37	26	18	18	1.93
41132--41201	33	2.2	32	89	2	104	11	22	18	47	1.81
41322--41376	14	3.6	14	73	21	56	40	23	27	9	1.85
41322--41392	33	2.2	33	92	0	115	42	25	23	8	1.82
41388--41485	19	5.7	19	70	22	81	11	23	22	42	1.85
41410--41499	14	5.7	14	73	23	72	10	24	23	42	1.84
41393--41507	33	3.5	33	93	0	203	10	23	20	45	1.82
43202--43673	185	2.5	186	98	1	930	21	12	19	46	1.83
43202--43673	93	5.1	93	98	1	930	21	12	19	46	1.83
43717--43843	18	7.3	19	71	20	91	44	29	17	8	1.78
43734--43843	18	6.4	18	71	25	96	45	29	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43751--43843	32	2.9	31	88	7	132	45	29	18	7	1.76
43717--43843	51	2.5	51	74	14	136	44	29	17	8	1.78
43839--43957	19	6.8	19	75	18	123	10	20	22	47	1.80
43861--43917	14	3.7	14	77	20	60	10	21	22	45	1.82
43844--43936	33	2.8	33	95	0	168	10	20	21	47	1.80
43908--43965	19	3.0	19	87	7	82	10	17	25	46	1.79
47655--47679	12	2.1	12	100	0	50	0	28	0	72	0.86
47854--47900	24	2.0	24	87	8	69	38	21	14	25	1.92
48573--48941	20	18.5	20	86	4	458	20	18	26	34	1.96
49497--49600	55	1.9	55	88	4	156	42	9	31	16	1.80
51220--51499	154	1.8	154	97	1	535	36	5	6	52	1.50
72421--72492	34	2.1	36	84	10	96	44	2	4	48	1.36
72637--72679	20	2.3	19	84	11	61	25	30	6	37	1.82
74183--74253	2	36.5	2	91	5	119	50	1	0	47	1.09
74183--74254	29	2.5	29	95	0	135	51	1	0	47	1.09
74319--74367	21	2.4	21	83	10	66	63	8	6	22	1.44

Tables:   1

The End!