genome.fa.s4137.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004137.1 Hibiscus syriacus cultivar Beakdansim tig00009046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87953

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493--574	23	3.7	23	70	15	73	25	21	25	26	2.00
433--573	43	3.2	44	87	6	191	26	23	22	26	2.00
4515--4539	6	4.2	6	100	0	50	16	52	0	32	1.44
8303--8394	44	2.0	46	91	4	152	36	6	23	32	1.81
10643--10726	14	6.5	14	68	22	67	55	1	0	42	1.07
10642--10726	37	2.2	39	84	14	106	56	1	0	42	1.07
10648--10716	26	2.8	25	82	8	70	56	1	0	42	1.08
10622--10778	63	2.5	65	92	6	261	57	1	0	40	1.09
10679--10752	26	2.9	27	80	15	77	55	1	0	43	1.08
19079--19139	31	2.0	31	83	3	79	34	19	11	34	1.88
22709--22759	3	17.0	3	100	0	102	66	0	0	33	0.92
22710--22771	6	9.7	7	94	5	66	67	0	1	30	1.00
34090--34261	74	2.3	75	76	6	170	30	18	21	29	1.97
35610--35667	22	2.6	22	94	0	98	34	17	12	36	1.87
36456--36740	113	2.5	113	93	0	462	37	14	21	27	1.91
36713--36777	20	3.3	20	68	12	62	53	7	21	16	1.68
36681--36779	40	2.5	40	93	1	173	49	10	21	19	1.77
36723--37039	123	2.6	123	87	3	449	40	14	19	25	1.90
45405--45457	21	2.5	21	87	0	79	20	24	18	35	1.95
45447--45519	20	3.7	20	94	0	128	39	21	19	19	1.92
45718--45783	22	3.0	22	90	0	105	24	39	15	21	1.91
46107--46220	40	3.2	33	75	15	95	13	18	24	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46150--46199	20	2.5	20	90	0	73	18	18	28	36	1.94
46107--46179	33	2.2	33	85	7	94	13	20	26	39	1.90
46167--46222	20	2.8	20	91	0	85	10	16	23	50	1.76
46186--46229	20	2.2	20	91	0	70	11	13	20	54	1.69
48103--48219	20	6.5	20	72	25	91	43	22	18	15	1.87
48106--48199	33	2.8	34	83	3	127	44	22	19	13	1.85
48106--48208	34	3.1	34	76	8	111	44	21	19	14	1.86
48139--48257	53	2.2	54	80	5	136	44	21	18	15	1.87
48266--48351	20	4.3	20	91	1	120	20	19	20	38	1.94
48279--48361	20	4.2	20	88	0	67	18	19	20	42	1.90
48838--48919	41	2.0	42	85	2	112	21	37	19	20	1.94
50300--50335	14	2.6	14	90	0	54	30	0	22	47	1.52
50513--50565	20	2.7	20	94	2	90	13	20	18	47	1.82
50570--50658	20	4.4	20	87	2	126	16	20	24	38	1.93
50577--50654	40	2.0	40	94	5	140	16	19	24	39	1.91
53168--53221	24	2.2	24	90	0	81	42	20	16	20	1.89
54060--54146	20	4.3	20	91	0	129	24	18	26	31	1.98
54140--54205	20	3.3	20	95	0	123	19	18	21	40	1.91
54202--54247	21	2.2	21	88	0	65	41	17	23	17	1.90
56116--56171	15	3.6	15	76	9	58	42	10	12	33	1.77
56119--56169	17	3.1	17	75	11	52	43	9	9	37	1.71
58032--58059	9	3.1	9	100	0	56	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58021--58062	11	3.9	11	81	6	50	78	0	2	19	0.86
58205--58278	26	2.5	31	72	22	95	32	36	13	17	1.89
58210--58272	26	2.4	26	94	0	117	33	33	12	20	1.90
58318--58421	54	1.9	54	98	0	199	54	7	5	31	1.52
61890--61997	36	3.0	36	93	1	182	36	15	8	39	1.78
66680--66738	29	2.0	29	100	0	118	37	13	13	35	1.84
70436--70516	23	3.7	23	75	8	87	25	24	24	24	2.00
70417--70511	44	2.2	42	85	7	120	27	25	22	25	2.00
70417--70539	43	2.9	43	77	7	117	27	26	21	24	1.99
72057--72100	21	2.1	21	86	0	61	9	40	15	34	1.79
73006--73194	64	3.0	62	77	12	186	31	23	18	26	1.97
73035--73194	65	2.5	63	86	8	207	30	23	18	27	1.98
77263--77737	236	2.0	232	92	2	781	28	13	19	39	1.89
77488--78071	286	2.1	266	84	10	748	27	12	20	39	1.89
79368--79397	16	1.9	15	93	6	51	30	30	0	40	1.57
79499--79548	21	2.4	21	96	0	91	42	8	2	48	1.44
79517--79572	17	3.4	17	69	18	55	39	7	1	51	1.40
79518--79585	32	2.1	33	91	2	111	35	5	1	57	1.32
79519--79598	32	2.6	32	86	7	103	37	7	2	52	1.43
81824--81930	34	3.1	34	87	2	151	31	2	6	58	1.38
81952--82029	30	2.6	29	82	11	95	33	7	7	51	1.59
82016--82049	15	2.3	15	89	0	50	41	0	8	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84162--84565	214	1.9	214	92	3	679	42	16	13	27	1.86
84817--84875	22	2.6	23	81	5	75	35	23	25	15	1.94

Tables:   1

The End!