Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004138.1 Hibiscus syriacus cultivar Beakdansim tig00009052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79093

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2011--2470
164
2.8
164
90
1
708
39
12
21
26
1.89
2670--2722
8
6.4
8
85
8
70
84
0
15
0
0.61
2660--2722
16
3.9
15
80
12
63
82
0
15
1
0.74
3199--3261
32
2.0
32
93
0
108
42
15
17
23
1.88
4881--5107
114
2.0
114
95
0
409
32
15
19
32
1.93
8181--8855
113
5.9
113
87
3
874
38
14
18
27
1.90
8793--8855
20
3.2
20
62
20
51
41
9
23
25
1.85
8774--9133
139
2.6
134
82
3
427
39
15
17
26
1.90
9773--9818
3
15.7
3
95
4
85
30
0
0
69
0.89
14896--14987
29
3.1
29
72
6
94
32
22
4
40
1.74
14870--15027
60
2.7
59
83
4
167
34
20
5
38
1.77
14889--15028
60
2.3
60
84
3
176
33
20
6
39
1.78
15172--15341
58
2.9
56
75
10
162
41
3
21
33
1.70
15703--15769
31
2.2
31
86
5
100
20
29
16
32
1.95
17009--17086
31
2.5
31
91
0
120
37
12
24
25
1.91
17754--17795
18
2.3
19
83
4
50
38
2
4
54
1.34
17535--17957
217
1.9
218
96
1
787
40
10
9
39
1.73
18285--18340
26
2.2
26
87
9
80
35
1
7
55
1.38
18323--18383
31
1.9
33
86
6
90
49
1
3
45
1.28
21659--21718
21
2.9
21
76
0
66
31
20
20
28
1.97
23323--23353
2
16.0
2
93
6
55
51
0
0
48
1.00
25490--25541
2
26.0
2
100
0
104
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37380--38674
81
16.0
80
89
0
1827
36
11
20
31
1.88
43565--43613
23
2.1
24
85
11
66
30
8
20
40
1.81
45687--45719
6
5.5
6
100
0
66
0
18
48
33
1.48
45871--45925
22
2.5
22
75
0
56
29
9
23
38
1.85
51460--51503
5
8.8
5
92
0
52
6
40
36
15
1.74
51501--51567
6
11.2
6
96
0
116
2
16
49
31
1.61
51842--51896
22
2.5
22
75
0
56
29
9
23
38
1.85
56200--56239
21
2.0
21
85
14
57
45
10
15
30
1.78
57246--57277
2
16.0
2
100
0
64
50
0
0
50
1.00
65471--65531
9
6.7
9
81
10
79
86
9
3
0
0.67
65469--65531
1
63.0
1
74
0
54
87
9
3
0
0.65
70982--71069
27
3.1
27
67
20
81
36
11
17
35
1.85
70980--71094
57
2.0
57
98
0
221
36
13
17
33
1.88
73211--73276
15
4.4
15
84
7
89
37
7
15
39
1.75
73211--73292
30
2.8
30
87
5
105
40
8
14
36
1.77
73207--73292
45
1.9
44
88
6
129
43
8
13
34
1.74
73203--73292
15
6.1
15
76
12
71
42
8
14
34
1.77
73677--73842
74
2.2
79
78
18
190
49
1
0
48
1.13
73776--73841
32
2.1
33
86
8
93
48
0
0
51
1.00
73732--73851
48
2.5
49
75
12
135
49
0
0
50
1.06
74304--74427
64
1.9
65
88
4
189
28
20
21
29
1.98
74305--74442
64
2.2
64
83
7
165
28
19
21
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77131--77210
21
3.7
21
74
5
79
25
26
25
23
2.00
78231--78268
18
2.1
18
90
0
58
78
0
2
18
0.86

Tables:   1

The End!