genome.fa.s4140.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004140.1 Hibiscus syriacus cultivar Beakdansim tig00009054_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61970

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--279	20	13.6	20	87	1	339	19	14	24	41	1.89
9--279	99	2.7	99	86	2	391	19	14	24	41	1.89
9--378	119	3.1	118	83	6	421	20	14	25	39	1.91
288--333	19	2.3	20	92	3	76	21	19	26	32	1.97
320--374	20	2.8	19	75	8	65	23	14	34	27	1.94
7051--7123	30	2.4	30	90	0	110	24	17	24	32	1.97
9766--9825	2	30.0	2	100	0	120	50	0	0	50	1.00
12235--12331	30	3.2	30	88	4	115	23	20	23	31	1.98
12262--12334	30	2.4	30	95	0	128	24	20	24	30	1.99
15877--15940	23	2.8	23	92	0	110	15	25	25	34	1.95
23420--23467	20	2.4	20	82	0	60	10	29	58	2	1.43
23437--23468	17	1.9	16	93	6	55	9	31	59	0	1.29
25240--25323	39	2.2	39	93	2	143	52	7	10	29	1.63
26903--27061	81	2.0	81	96	0	291	32	15	22	30	1.94
27360--27440	42	1.9	42	87	0	117	37	4	27	30	1.78
29061--29154	20	5.1	19	69	24	76	48	11	5	34	1.62
29059--29187	53	2.5	52	93	3	224	49	11	6	32	1.64
33757--33796	20	2.0	20	95	0	71	45	12	5	37	1.64
33753--33881	53	2.5	52	94	3	233	48	12	5	33	1.63
33810--33849	20	2.0	21	90	5	64	45	15	5	35	1.68
39910--40055	34	4.3	34	94	0	256	23	13	32	30	1.93
41921--41949	10	3.0	10	95	5	51	58	0	41	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43007--43240	54	4.3	54	90	0	360	33	20	20	25	1.97
43016--43100	27	3.1	27	61	12	66	35	17	20	27	1.95
54974--55094	61	2.0	61	91	0	197	39	11	13	35	1.81

Tables:   1

The End!