genome.fa.s4141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004141.1 Hibiscus syriacus cultivar Beakdansim tig00009055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143408

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9823--9874	24	2.2	24	89	0	77	42	19	21	17	1.89
16210--16236	2	13.5	2	100	0	54	48	0	0	51	1.00
16332--16380	20	2.4	20	82	3	53	30	4	4	61	1.33
21822--21852	4	7.8	4	100	0	62	0	0	22	77	0.77
23762--23890	41	3.1	41	90	0	213	35	23	16	24	1.95
26347--26417	2	35.5	2	100	0	142	50	0	0	49	1.00
27191--27232	21	2.0	21	85	0	57	45	0	52	2	1.13
32965--33042	41	1.9	41	91	0	129	29	7	11	51	1.66
32966--33051	41	2.1	40	86	6	118	32	5	10	51	1.60
39243--39282	2	20.0	2	100	0	80	50	0	50	0	1.00
39497--40028	208	2.5	208	86	3	737	23	11	20	45	1.83
40147--40185	4	9.8	4	100	0	78	25	0	23	51	1.49
43745--43857	39	2.9	40	83	11	128	41	9	2	46	1.51
48951--49009	30	2.0	29	86	3	82	33	8	13	44	1.74
49101--49186	31	2.9	29	76	8	84	38	11	11	38	1.78
57292--57344	21	2.5	21	93	3	88	41	28	15	15	1.87
59290--59335	19	2.5	18	80	16	58	26	0	0	73	0.83
59615--59685	32	2.2	32	82	2	90	25	23	9	40	1.85
61414--61478	33	1.9	34	81	9	80	55	6	4	33	1.45
61599--61641	17	2.5	17	78	14	52	58	0	2	39	1.11
62349--62383	16	2.2	16	100	0	70	22	37	14	25	1.92
62393--62446	18	3.1	18	87	12	69	25	1	0	72	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62408--62446	12	3.2	12	85	3	51	25	0	0	74	0.82
62405--62454	18	2.9	17	85	11	66	24	2	0	74	0.93
63408--63462	3	18.3	3	96	0	101	65	0	1	32	1.03
68259--68287	15	1.9	15	100	0	58	34	24	34	6	1.82
68255--68293	15	2.6	15	80	15	53	33	23	30	12	1.92
71734--71799	28	2.4	28	97	0	123	22	15	22	39	1.91
74389--74461	36	2.0	36	97	0	137	27	16	19	36	1.93
78921--78988	19	3.6	19	75	13	68	60	0	4	35	1.17
78924--78988	20	3.4	19	75	14	71	61	0	4	33	1.16
85175--85205	2	15.5	2	100	0	62	0	48	0	51	1.00
86893--86923	15	2.1	15	100	0	62	38	0	6	54	1.26
88322--88496	59	2.9	60	78	7	185	33	22	2	41	1.69
91819--91859	21	1.9	22	85	5	57	43	2	2	51	1.28
93516--94024	255	2.0	252	86	3	707	38	20	15	25	1.91
105062--105100	18	2.1	19	85	4	53	58	10	5	25	1.51
116895--116941	23	2.0	23	83	8	58	57	2	0	40	1.11
117890--117933	16	3.0	16	78	18	51	34	2	0	63	1.07
117883--117925	14	2.9	14	83	12	59	34	2	0	62	1.08
118361--118413	21	2.5	22	82	11	58	49	26	0	24	1.51
118668--118728	30	2.0	30	100	0	122	47	13	13	26	1.79
122887--122931	2	22.5	2	90	0	72	51	4	0	44	1.21
123957--123990	17	2.0	17	100	0	68	35	11	29	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127005--127360	157	2.3	153	84	5	439	27	17	3	50	1.63
127083--127423	152	2.2	154	81	5	368	30	16	4	48	1.65
127556--127594	20	2.0	20	94	0	69	41	17	0	41	1.50
129093--129126	4	8.5	4	100	0	68	23	0	0	76	0.79
130255--130313	31	1.9	31	89	0	91	47	13	15	23	1.81
133175--133242	27	2.6	27	95	4	122	41	16	11	30	1.84
136940--137007	27	2.6	27	93	4	113	42	16	10	30	1.81
139266--139449	90	2.0	91	95	1	334	23	14	11	50	1.76
139277--139486	90	2.3	91	85	5	273	26	16	10	47	1.78
141100--141131	11	2.9	11	90	0	55	59	31	0	9	1.29

Tables:   1

The End!