genome.fa.s4142.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004142.1 Hibiscus syriacus cultivar Beakdansim tig00009056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137872

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4183--4221	19	2.1	19	90	9	62	64	0	12	23	1.28
9442--9496	5	10.8	5	78	21	53	0	20	1	78	0.85
9449--9496	8	5.9	8	88	11	71	0	20	2	77	0.88
14889--14923	14	2.5	14	90	9	54	0	17	2	80	0.84
17775--17819	23	2.0	23	82	8	56	42	26	11	20	1.85
34426--34477	23	2.2	25	80	13	65	32	0	38	28	1.57
34854--34896	19	2.2	20	87	4	61	48	6	9	34	1.62
37394--37455	33	1.9	32	84	12	83	56	0	30	12	1.37
38008--38050	19	2.2	20	87	4	61	48	6	9	34	1.62
45155--45324	85	2.0	85	95	2	306	27	22	14	35	1.93
50859--50927	33	2.1	33	83	5	86	31	1	36	30	1.67
50913--51009	13	8.0	12	72	22	62	28	3	37	30	1.73
50898--51010	36	3.2	36	92	1	174	27	3	36	32	1.74
54903--54978	36	2.1	36	87	2	109	34	36	2	26	1.71
54949--55017	33	2.1	33	83	5	86	30	36	1	31	1.67
57612--57646	11	3.2	11	92	8	54	82	0	17	0	0.66
61533--61608	36	2.1	36	87	2	109	34	36	2	26	1.71
61579--61647	33	2.1	33	83	5	86	30	36	1	31	1.67
64254--64278	2	12.5	2	100	0	50	52	0	0	48	1.00
78879--78982	45	2.3	45	94	0	181	29	22	9	38	1.86
78892--78962	22	3.2	22	61	11	54	29	19	11	39	1.87
79475--79576	34	2.9	35	85	4	152	34	3	35	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83362--83471	35	3.1	35	69	22	88	35	2	37	24	1.70
85336--85386	19	2.6	20	87	3	68	45	5	15	33	1.71
89311--89361	19	2.6	20	87	3	68	45	5	15	33	1.71
96319--96378	13	4.6	13	78	13	61	0	5	10	85	0.75
96342--96378	19	2.0	18	94	5	65	0	2	10	86	0.67
111059--111101	23	1.9	21	81	13	50	32	18	13	34	1.90
114038--114070	15	2.2	15	94	0	57	21	21	24	33	1.97
119554--119657	45	2.3	45	91	0	163	29	23	8	38	1.84
122569--122620	11	4.6	11	80	7	52	84	9	3	1	0.82
122578--122627	12	4.2	13	90	10	72	80	14	6	0	0.90
130667--130770	45	2.3	45	93	0	172	29	22	8	39	1.84
131261--131375	34	3.3	35	84	6	162	34	4	34	26	1.76
131712--131752	19	2.2	19	90	0	64	48	7	9	34	1.64
134648--134694	11	4.0	11	75	24	51	6	14	2	76	1.08
135122--135235	35	3.3	35	82	4	151	34	2	37	25	1.70

Tables:   1

The End!