genome.fa.s4143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004143.1 Hibiscus syriacus cultivar Beakdansim tig00009059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81519

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656--706	21	2.4	21	93	0	84	19	13	31	35	1.91
722--814	21	4.4	21	67	15	50	20	10	32	36	1.87
1130--1204	21	3.6	21	92	0	114	24	36	18	21	1.95
1107--1204	42	2.3	42	84	3	117	22	35	16	25	1.94
2697--2736	20	2.0	20	95	0	71	15	17	25	42	1.88
2720--2778	29	2.0	29	96	0	109	30	25	18	25	1.98
4813--4909	21	4.7	20	79	5	104	20	37	19	22	1.95
4818--4909	42	2.2	42	86	7	125	20	36	19	22	1.95
6039--6095	22	2.6	22	94	0	96	21	17	38	22	1.93
6732--6853	59	2.1	59	87	3	174	28	23	18	28	1.98
9509--9542	14	2.4	14	95	0	59	35	0	17	47	1.48
9442--9605	78	2.1	77	88	3	240	31	1	16	51	1.52
9679--9730	20	2.6	20	78	0	68	26	23	25	25	2.00
12290--12343	24	2.2	24	93	0	90	40	20	18	20	1.91
12290--12357	24	2.8	24	84	0	64	38	20	17	23	1.93
13312--13442	40	3.3	40	85	2	183	35	12	21	31	1.90
13292--13444	20	7.7	19	77	10	128	35	13	20	30	1.91
19718--19768	18	2.8	18	93	0	84	41	11	27	19	1.86
28533--28564	15	2.0	17	88	11	50	31	12	6	50	1.65
28666--28714	25	1.9	25	83	4	62	79	8	2	10	1.01
28816--28869	23	2.3	23	87	0	81	24	18	18	38	1.93
29694--29847	74	2.1	74	96	0	281	32	16	14	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33387--33489	36	2.9	36	98	0	197	41	17	17	23	1.90
41642--41744	36	2.9	36	98	0	197	41	17	17	23	1.90
45824--45867	23	1.9	23	86	9	63	20	2	13	63	1.40
45857--45901	24	1.9	24	90	4	74	20	2	22	55	1.54
46549--46587	20	2.0	20	89	0	60	30	28	17	23	1.97
49857--49920	23	2.8	23	90	0	101	26	26	28	18	1.98
49931--50153	103	2.2	103	96	0	410	36	24	13	26	1.92
50895--51031	63	2.2	63	79	7	145	26	17	21	34	1.96
55523--55586	23	2.8	23	87	0	92	28	26	26	18	1.98
55597--55819	103	2.2	103	96	0	410	38	24	11	26	1.89
56571--56795	64	3.5	63	82	9	244	28	19	19	32	1.96
61053--61088	18	2.0	18	88	0	54	58	19	2	19	1.52
61300--61381	29	2.8	29	92	0	119	31	18	23	26	1.97
62899--62999	21	4.8	21	88	2	123	26	18	33	20	1.96
62899--63017	42	2.8	42	84	0	139	27	16	32	22	1.96
62899--63017	63	1.9	63	82	3	150	27	16	32	22	1.96
63161--63190	4	7.5	4	92	0	51	73	0	0	26	0.84
63413--63462	21	2.4	21	82	0	64	34	32	14	20	1.92
63571--63675	42	2.5	42	76	0	111	19	14	36	30	1.91
65202--65240	20	2.0	20	100	0	78	15	12	20	51	1.76
65204--65247	20	2.2	20	91	0	70	15	13	20	50	1.78
65715--65764	20	2.5	20	100	0	100	50	14	14	22	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65715--65777	20	3.2	20	90	2	74	42	17	17	22	1.89
69559--69614	3	18.7	3	96	0	103	32	0	1	66	1.03
71672--71710	18	2.2	17	90	4	60	23	25	0	51	1.49
72022--72141	31	3.9	31	86	4	163	39	20	17	22	1.93
72912--72994	30	2.8	30	88	1	114	36	30	15	18	1.92
72939--73033	31	3.1	31	82	7	88	37	24	16	21	1.93
78295--78338	21	2.1	21	95	0	79	25	25	25	25	2.00
78759--78797	18	2.2	17	90	4	60	23	25	0	51	1.49
79112--79235	31	4.0	31	91	0	176	37	19	20	23	1.95
81411--81460	21	2.5	20	81	18	59	32	16	18	34	1.92

Tables:   1

The End!