Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004144.1 Hibiscus syriacus cultivar Beakdansim tig00009062_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50858

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8144--8283
31
4.5
31
89
5
194
21
17
20
41
1.90
9000--9062
21
3.1
21
84
6
85
31
22
20
25
1.98
9083--9124
21
2.0
21
95
0
75
26
23
26
23
2.00
17797--17865
36
1.9
35
91
2
111
47
14
5
31
1.68
18987--19044
29
2.0
29
90
6
91
15
37
24
22
1.93
19091--19145
20
2.8
20
91
0
92
27
34
27
10
1.90
19098--19178
10
7.8
10
75
17
58
27
32
30
9
1.89
19122--19185
33
1.9
33
87
0
92
26
29
34
9
1.88
19214--19276
10
6.0
11
75
17
55
11
26
36
25
1.90
19263--19304
14
3.0
14
85
0
66
9
26
40
23
1.85
29312--29384
23
3.3
22
83
9
78
15
16
12
56
1.68
30788--30844
25
2.4
24
88
5
80
57
3
7
31
1.42
30967--31032
33
2.0
33
93
0
114
45
3
3
48
1.33
31049--31093
23
2.0
23
86
0
63
40
2
2
55
1.24
31106--31200
47
2.0
47
93
0
163
42
5
9
43
1.59
31186--31248
30
2.1
30
85
5
83
47
0
6
46
1.28
31196--31254
30
1.9
31
93
3
102
44
1
5
49
1.34
31294--31341
23
2.0
24
84
4
62
33
2
2
62
1.18
31721--31758
20
2.0
20
84
5
51
23
7
31
36
1.84
33515--33591
10
7.1
10
72
16
64
12
11
16
58
1.63
33502--33557
23
2.4
23
87
0
85
10
8
19
60
1.55
33512--33591
33
2.4
33
91
0
133
12
11
17
58
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35004--35082
27
2.9
27
94
0
140
39
2
16
41
1.62
37218--37716
105
4.7
104
78
11
466
55
10
3
30
1.49
38068--38182
39
2.9
39
80
3
133
24
22
20
33
1.97
38365--38452
29
3.0
30
76
5
99
39
4
4
51
1.43
38458--38554
29
3.4
29
77
5
90
45
8
5
41
1.56
38470--38551
28
2.9
28
80
12
80
47
7
3
41
1.49
38678--38768
29
3.1
28
81
7
94
47
8
3
40
1.51
38688--38770
29
2.9
29
82
7
107
50
9
2
37
1.48
39883--40344
131
3.5
131
85
3
621
33
9
12
43
1.75
40392--41207
199
4.1
198
88
3
1129
33
12
13
39
1.84
40392--41207
397
2.1
397
88
3
1185
33
12
13
39
1.84
42252--42844
197
3.0
195
86
3
830
31
16
12
39
1.86
43685--43728
12
3.7
12
81
6
54
34
0
2
63
1.07
48979--49067
29
3.0
29
87
10
128
39
21
20
19
1.93
48978--49068
30
3.0
31
89
9
136
38
23
19
18
1.93
49678--49828
64
2.4
64
78
6
157
27
17
19
35
1.94

Tables:   1

The End!