genome.fa.s4145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004145.1 Hibiscus syriacus cultivar Beakdansim tig00009063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63114

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2712--2769	24	2.5	23	83	8	73	20	12	15	51	1.75
3660--3718	30	1.9	31	90	10	95	32	6	15	45	1.72
3799--3897	21	4.8	20	83	10	119	22	35	20	22	1.96
3830--3897	13	4.9	14	70	21	54	22	33	20	23	1.97
3799--3992	21	9.8	20	71	17	93	24	31	19	24	1.98
3939--4001	21	3.0	21	81	4	83	22	25	25	26	2.00
3918--4001	41	2.0	41	90	0	132	21	26	23	28	1.99
4359--4428	34	2.1	32	84	5	86	32	15	25	25	1.95
6569--6628	30	2.0	30	90	6	95	35	6	15	43	1.72
6708--6765	21	2.8	21	91	0	98	20	37	18	22	1.94
6708--6806	42	2.4	41	85	10	121	22	33	20	24	1.97
6726--6900	20	8.9	20	72	16	80	23	29	21	26	1.99
6827--6909	41	2.0	41	90	4	132	19	27	26	26	1.99
8618--8926	66	4.7	66	93	0	512	33	6	22	38	1.79
8618--8926	131	2.3	132	93	0	512	33	6	22	38	1.79
8750--9241	184	2.7	183	91	2	776	34	6	21	36	1.79
8932--9110	67	2.7	68	86	5	249	35	5	21	37	1.77
9001--9228	117	1.9	118	90	4	363	35	5	23	35	1.79
10053--10091	20	2.0	19	85	5	51	46	10	15	28	1.78
9489--10565	199	5.4	197	82	6	1131	39	14	14	31	1.86
14926--14976	20	2.5	20	96	0	93	45	1	13	39	1.55
14946--16069	199	5.6	197	81	6	1246	38	14	15	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15541--15591	20	2.5	20	96	0	93	41	5	13	39	1.69
15545--15597	20	2.7	20	90	0	70	39	9	16	33	1.81
15145--15988	416	2.0	417	89	1	1298	39	14	15	31	1.87
15342--15988	217	3.1	214	78	9	711	39	14	15	31	1.87
15756--15794	20	2.0	19	85	5	51	46	10	15	28	1.78
15561--16069	200	2.6	198	83	4	650	38	13	15	32	1.86
16818--16862	20	2.2	20	100	0	90	24	35	4	35	1.76
17116--17163	19	2.5	19	96	0	87	31	6	10	52	1.60
19889--20290	199	2.0	200	86	2	567	39	15	15	29	1.88
20443--20487	23	2.0	23	86	0	63	37	20	8	33	1.83
27621--27680	19	3.4	18	80	10	72	70	1	10	18	1.24
27671--27743	15	4.9	14	75	17	60	78	9	1	10	1.04
27859--27902	21	2.1	21	84	12	56	79	6	4	9	1.04
28808--28838	16	2.0	15	93	6	53	12	25	41	19	1.87
29045--29095	5	10.6	5	83	8	61	76	1	0	21	0.88
29047--29090	23	1.9	23	90	0	70	75	2	0	22	0.92
29060--29109	15	3.4	14	81	10	55	70	0	0	30	0.88
29138--29229	34	2.8	34	80	16	81	48	8	3	39	1.50
29137--29248	31	3.4	35	76	18	82	50	8	2	38	1.46
29252--29348	35	2.7	36	76	15	112	46	8	3	42	1.49
30111--30911	164	4.8	164	93	1	1278	26	20	23	30	1.99
30102--30918	83	9.9	83	75	6	735	26	20	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36095--36136	21	2.0	22	85	4	59	78	9	4	7	1.08
36093--36178	36	2.4	36	88	7	122	74	6	6	11	1.21
38738--38772	18	1.9	18	88	0	52	28	17	0	54	1.43
41582--41612	16	2.0	15	93	6	53	12	25	41	19	1.87
41824--41900	19	3.9	19	76	11	66	70	1	1	27	1.03
41819--41902	14	5.4	15	75	12	55	70	2	1	26	1.07
41955--42146	35	5.5	35	73	19	136	46	8	3	42	1.49
41969--42031	33	1.9	32	84	9	83	50	6	4	38	1.49
41968--42041	32	2.2	33	79	15	82	48	6	4	40	1.48
41929--42149	35	6.4	32	70	23	116	47	8	2	41	1.47
41929--42148	34	6.4	34	73	18	140	47	8	2	41	1.47
42172--42278	37	2.8	38	77	7	110	49	7	2	40	1.45
45062--45101	20	2.0	20	85	0	53	35	22	20	22	1.96
45092--45140	20	2.5	20	96	0	89	48	24	10	16	1.76
45275--45321	22	2.1	22	92	0	76	23	44	12	19	1.85
45599--45649	20	2.6	19	87	3	75	13	15	19	50	1.77
47304--47354	21	2.4	21	93	0	84	19	13	31	35	1.91
47370--47465	21	4.6	21	67	16	56	20	10	32	36	1.87
47784--47858	21	3.6	21	92	0	114	24	36	18	21	1.95
47761--47858	42	2.3	42	84	3	117	22	35	16	25	1.94
49355--49402	20	2.4	20	92	0	78	14	10	25	50	1.74
49387--49445	29	2.0	29	96	0	109	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51489--51585	21	4.7	20	79	5	104	20	37	19	22	1.95
51494--51585	42	2.2	42	86	7	125	20	36	19	22	1.95
52715--52771	22	2.6	22	94	0	96	21	17	38	22	1.93
53409--53530	59	2.1	59	87	3	174	28	23	18	28	1.98
56190--56223	14	2.4	14	95	0	59	35	0	17	47	1.48
56123--56286	78	2.1	77	88	3	240	31	1	16	51	1.52
56359--56410	20	2.6	20	78	0	68	26	23	25	25	2.00
58961--59013	24	2.2	24	90	3	81	41	20	18	18	1.91
58961--59027	24	2.8	24	81	2	64	38	20	17	22	1.93
59978--60106	39	3.3	39	84	5	170	34	12	21	31	1.91
59958--60109	20	7.7	19	77	11	128	34	13	21	30	1.91

Tables:   1

The End!