genome.fa.s4147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004147.1 Hibiscus syriacus cultivar Beakdansim tig00009070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76441

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123--178	3	18.7	3	80	7	60	39	3	0	57	1.16
124--178	15	3.7	15	85	7	76	40	3	0	56	1.17
1720--1769	23	2.0	26	85	11	70	46	2	0	52	1.12
4062--4105	22	2.0	22	100	0	88	4	31	27	36	1.77
7672--7728	20	2.9	19	85	10	71	21	22	10	45	1.82
7678--7728	20	2.5	20	90	0	75	21	21	11	45	1.84
7681--7735	20	2.8	20	85	0	65	23	21	9	45	1.80
9516--9545	13	2.4	13	94	5	53	33	6	0	60	1.23
17223--17289	30	2.3	29	79	7	82	52	0	1	46	1.09
17291--17360	21	3.3	21	75	15	72	47	4	0	48	1.21
17285--17378	42	2.2	42	83	5	118	47	4	1	46	1.28
17303--17371	21	3.3	21	69	18	54	46	5	0	47	1.26
17499--17571	20	3.6	20	82	10	94	30	27	19	23	1.98
17518--17592	21	3.6	21	78	10	91	37	25	17	20	1.94
17499--17593	41	2.3	41	94	0	163	33	25	17	23	1.96
17733--17826	22	4.3	22	93	0	161	21	44	13	20	1.86
18201--18298	20	5.2	20	71	14	82	19	17	24	38	1.92
20204--20250	20	2.3	20	85	7	60	36	25	21	17	1.94
20319--20400	38	2.2	38	86	0	110	12	14	26	46	1.80
20328--20383	19	2.9	19	100	0	112	5	16	30	48	1.68
20423--20473	20	2.5	20	83	0	66	17	17	23	41	1.90
21010--21079	21	3.3	21	72	5	70	22	37	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20986--21079	42	2.2	42	84	3	118	22	37	19	21	1.95
22628--22665	20	1.9	20	88	0	58	47	21	21	10	1.80
22708--22796	20	4.4	20	88	2	126	28	20	22	29	1.98
22790--22838	14	3.5	14	100	0	98	14	14	22	48	1.79
22770--22892	34	3.8	34	79	14	143	21	14	22	40	1.90
22870--23153	140	2.0	140	96	0	523	44	14	12	28	1.82
23211--23245	18	1.9	18	94	0	61	17	2	25	54	1.57
25502--25555	24	2.2	24	93	0	90	40	20	18	20	1.91
26376--26482	20	5.3	20	80	4	117	27	21	24	27	1.99
26497--26542	19	2.4	19	85	3	56	23	15	30	30	1.95
26508--26544	19	1.9	19	94	0	65	21	16	29	32	1.95
26853--26885	17	1.9	17	93	0	57	48	0	0	51	1.00
26840--26922	43	1.9	43	82	4	105	50	1	2	45	1.22
30180--30216	5	7.2	5	93	6	65	56	0	0	43	0.99
31047--31109	32	2.1	31	85	11	87	44	0	0	55	0.99
31060--31110	16	3.2	16	76	18	61	45	0	0	54	0.99
33070--33408	184	1.8	184	83	5	443	38	21	11	28	1.88
33395--33473	33	2.4	33	93	2	142	39	37	11	11	1.77
33207--33922	248	2.9	249	90	6	1109	38	26	11	23	1.89
43418--43495	23	3.3	23	81	1	93	32	23	20	24	1.98
43502--43822	103	3.1	103	97	0	599	36	22	13	26	1.92
44559--44701	64	2.2	64	82	7	166	28	16	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49470--49547	23	3.3	23	81	1	93	32	23	20	24	1.98
49554--49874	103	3.1	102	95	0	570	37	22	13	26	1.91
50611--50765	64	2.4	64	83	4	179	26	18	20	34	1.96
53898--53937	21	1.9	21	89	0	62	25	40	25	10	1.86
58731--58775	12	3.8	12	87	0	72	20	15	20	44	1.87
61345--61378	14	2.4	14	100	0	68	26	14	29	29	1.95
61866--61923	20	2.8	20	84	7	73	31	8	32	27	1.87
63131--63177	24	1.9	25	91	4	78	55	0	0	44	0.99
63131--63186	24	2.3	26	85	11	75	53	0	1	44	1.11
68222--68367	60	2.4	60	80	5	161	32	19	4	43	1.72
68530--68620	29	3.2	27	70	13	76	35	5	26	32	1.80
68528--68637	57	1.9	56	85	5	150	37	4	23	34	1.75
70497--70534	18	2.0	20	90	10	62	42	5	5	47	1.48
70636--70666	15	2.1	15	100	0	62	29	19	6	45	1.75
72341--72376	2	18.5	2	94	5	65	47	0	0	52	1.00

Tables:   1

The End!