genome.fa.s4149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004149.1 Hibiscus syriacus cultivar Beakdansim tig00009072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95959

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
792--951	64	2.5	64	85	10	195	30	23	19	27	1.98
4955--5421	232	2.0	228	90	4	726	28	13	19	39	1.89
6392--6458	19	3.3	19	75	17	62	38	4	0	56	1.19
7059--7088	16	1.9	15	93	6	51	30	30	0	40	1.57
7190--7241	22	2.4	22	96	0	95	40	7	1	50	1.42
7207--7278	33	2.2	33	94	0	126	34	5	1	58	1.30
7211--7291	33	2.5	33	88	5	114	37	7	2	53	1.43
9516--9623	35	3.1	35	90	0	171	31	2	6	59	1.37
9648--9725	30	2.6	29	82	11	95	33	7	7	51	1.59
9770--9809	19	2.2	19	86	4	55	45	0	2	52	1.14
11881--12285	215	1.9	214	92	2	688	41	16	13	28	1.86
12535--12593	22	2.6	23	81	5	75	35	23	25	15	1.94
19044--19081	20	1.9	20	94	0	67	55	10	18	15	1.68
22612--22719	54	2.0	54	90	0	171	32	14	25	27	1.95
23765--23798	15	2.3	15	100	0	68	41	14	11	32	1.82
26525--26805	137	2.1	137	85	4	370	41	17	13	27	1.86
28418--28468	14	3.8	13	75	15	50	47	33	1	17	1.59
28558--28667	7	15.7	7	73	3	51	45	29	2	22	1.66
28569--28642	28	2.6	28	80	4	78	48	25	1	24	1.59
28372--28627	137	1.9	137	81	1	316	46	21	6	25	1.74
36581--36628	25	2.0	24	87	4	69	25	4	16	54	1.60
48122--48487	163	2.2	163	88	3	533	29	14	27	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48113--48487	108	3.5	108	88	3	547	29	14	26	28	1.96
48122--48487	55	6.7	55	88	3	528	29	14	27	28	1.95
50584--50631	25	2.0	24	87	4	69	25	4	16	54	1.60
53935--54244	71	4.4	70	75	6	239	33	24	21	20	1.97
54381--54472	35	2.6	35	92	0	148	31	2	5	60	1.31
62072--62191	3	39.0	3	77	8	107	33	4	0	62	1.14
62086--62191	28	4.0	26	79	12	110	33	3	0	62	1.13
62233--62303	29	2.5	29	93	2	126	40	38	1	19	1.61
62245--62297	17	3.4	17	65	24	53	39	37	1	20	1.64
66939--67075	40	3.5	40	81	5	152	32	16	27	24	1.96
72846--72912	3	22.3	3	100	0	134	34	0	0	65	0.93
79911--79955	19	2.4	19	92	3	74	75	0	17	6	1.01
79897--79955	19	3.2	17	81	15	64	74	0	15	10	1.06
81817--82386	38	14.7	38	82	5	624	24	18	18	38	1.92
81817--82467	38	16.4	42	77	11	417	23	17	18	39	1.91
81815--82335	156	3.4	157	86	3	680	24	18	17	38	1.92
82326--82550	45	5.1	44	84	4	274	20	16	20	43	1.88
82357--82609	45	5.6	44	82	5	269	20	16	20	42	1.89
82326--82595	135	2.0	131	80	7	303	20	16	20	43	1.88
83172--83776	134	4.5	134	87	1	811	30	16	19	33	1.94
83172--83776	266	2.3	268	87	1	840	30	16	19	33	1.94
83964--84008	3	15.0	3	90	0	72	28	0	2	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86720--86753	7	4.9	7	92	0	59	17	23	0	58	1.38
91008--91422	137	3.0	136	83	3	472	29	12	13	44	1.80
91008--91475	139	3.4	139	80	5	477	29	11	13	44	1.80
93659--93691	17	1.9	17	88	11	50	72	3	12	12	1.23
93850--93874	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!