Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004151.1 Hibiscus syriacus cultivar Beakdansim tig00009079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45873
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:2919 original size:21 final size:21
Alignment explanation
Indices: 2893--2986 Score: 116
Period size: 21 Copynumber: 4.5 Consensus size: 21
2883 GTCACCCTAG
** *
2893 ACTGTCATGTTAGTATTGTTA
1 ACTGTCACATTAGTATTGTGA
2914 ACTGTCACATTAGTATTGTGA
1 ACTGTCACATTAGTATTGTGA
* * *
2935 ATTGTCACATCAATATTGTGA
1 ACTGTCACATTAGTATTGTGA
* *
2956 ATTGTCACATCAGTATTGTGA
1 ACTGTCACATTAGTATTGTGA
2977 ACTGTCACAT
1 ACTGTCACAT
2987 CAACACTGTA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 65 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (21 bp):
ACTGTCACATTAGTATTGTGA
Found at i:2987 original size:21 final size:21
Alignment explanation
Indices: 2904--2988 Score: 125
Period size: 21 Copynumber: 4.0 Consensus size: 21
2894 CTGTCATGTT
* *
2904 AGTATTGTTAACTGTCACATT
1 AGTATTGTGAACTGTCACATC
*
2925 AGTATTGTGAATTGTCACATC
1 AGTATTGTGAACTGTCACATC
* *
2946 AATATTGTGAATTGTCACATC
1 AGTATTGTGAACTGTCACATC
2967 AGTATTGTGAACTGTCACATC
1 AGTATTGTGAACTGTCACATC
2988 A
1 A
2989 ACACTGTAGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (21 bp):
AGTATTGTGAACTGTCACATC
Found at i:8476 original size:23 final size:24
Alignment explanation
Indices: 8423--8476 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
8413 CTCCCCCTTC
8423 TTCATCTGATTCAACACCCAAGTT
1 TTCATCTGATTCAACACCCAAGTT
8447 TTCATCTGATTCAACACCCAAG-T
1 TTCATCTGATTCAACACCCAAGTT
8470 TTCATCT
1 TTCATCT
8477 TTGCTTCAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 8 0.27
24 22 0.73
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (24 bp):
TTCATCTGATTCAACACCCAAGTT
Found at i:13220 original size:38 final size:39
Alignment explanation
Indices: 13178--13274 Score: 128
Period size: 38 Copynumber: 2.5 Consensus size: 39
13168 CAATTCCCAG
*
13178 AATCCCTAATTTCCCATTTT-CATTTC-CCTCTCGCA-CTC
1 AATCCCTAA-TTCCCATTTTACAATTCTCCT-TCGCATCTC
*
13216 AATCCCTAATTCCCCTTTTACAATTCTCCTTCGCATCTC
1 AATCCCTAATTCCCATTTTACAATTCTCCTTCGCATCTC
13255 AATCCCTAATTCACCATTTT
1 AATCCCTAATTC-CCATTTT
13275 TCTCTTTGTT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
37 9 0.17
38 19 0.37
39 18 0.35
40 6 0.12
ACGTcount: A:0.22, C:0.37, G:0.02, T:0.39
Consensus pattern (39 bp):
AATCCCTAATTCCCATTTTACAATTCTCCTTCGCATCTC
Found at i:14591 original size:20 final size:21
Alignment explanation
Indices: 14554--14592 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
14544 GATGGTCTTG
*
14554 ATGAAGGATGTTGATGATGAA
1 ATGAAGGATGGTGATGATGAA
*
14575 ATGAA-GATGGTGGTGATG
1 ATGAAGGATGGTGATGATG
14593 TTGTATCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (21 bp):
ATGAAGGATGGTGATGATGAA
Found at i:14972 original size:19 final size:21
Alignment explanation
Indices: 14929--14980 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
14919 GAAACCCCTT
14929 TGAAAATACATGATTTTTAAA
1 TGAAAATACATGATTTTTAAA
14950 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGATTTTTAAA
*
14969 TGAATATACATG
1 TGAAAATACATG
14981 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.37
Consensus pattern (21 bp):
TGAAAATACATGATTTTTAAA
Found at i:20309 original size:39 final size:39
Alignment explanation
Indices: 20266--20363 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 39
20256 TCAATTCCAG
*
20266 AATCCCTAATTTCCCATTTT-CATTTC-CCTCTCGCACCTC
1 AATCCCTAA-TTCCCATTTTCCAATTCTCCT-TCGCACCTC
* * **
20305 AATCCCTAATTCCCCTTTTCCAATTCTCCTTCGTATTTC
1 AATCCCTAATTCCCATTTTCCAATTCTCCTTCGCACCTC
20344 AATCCCTAATTCACCATTTT
1 AATCCCTAATTC-CCATTTT
20364 TCTCTTCGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
38 9 0.18
39 32 0.64
40 9 0.18
ACGTcount: A:0.20, C:0.37, G:0.02, T:0.41
Consensus pattern (39 bp):
AATCCCTAATTCCCATTTTCCAATTCTCCTTCGCACCTC
Found at i:22625 original size:40 final size:40
Alignment explanation
Indices: 22566--22642 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
22556 AATCTGACTA
*
22566 AAAAATAGTCCAGGTTCATTGCATCATTATTCAGCTGCTC
1 AAAAATAGTCCAGGATCATTGCATCATTATTCAGCTGCTC
22606 AAAAATAGTCCAGGATCATTGCATCATTATTCAGCTG
1 AAAAATAGTCCAGGATCATTGCATCATTATTCAGCTG
22643 TTATAACTCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (40 bp):
AAAAATAGTCCAGGATCATTGCATCATTATTCAGCTGCTC
Found at i:22676 original size:22 final size:22
Alignment explanation
Indices: 22646--22687 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
22636 TCAGCTGTTA
* *
22646 TAACTCCTGAAATTATATCATG
1 TAACCCCTGAAATTAAATCATG
*
22668 TAACCCCTGGAATTAAATCA
1 TAACCCCTGAAATTAAATCA
22688 AATAACTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (22 bp):
TAACCCCTGAAATTAAATCATG
Found at i:22693 original size:22 final size:22
Alignment explanation
Indices: 22645--22693 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
22635 TTCAGCTGTT
* * *
22645 ATAACTCCTGAAATTATATCAT
1 ATAACCCCTGAAATTAAATCAA
* *
22667 GTAACCCCTGGAATTAAATCAA
1 ATAACCCCTGAAATTAAATCAA
22689 ATAAC
1 ATAAC
22694 TCATGTAACT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (22 bp):
ATAACCCCTGAAATTAAATCAA
Found at i:25769 original size:16 final size:16
Alignment explanation
Indices: 25750--25783 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25740 CAATATACGA
25750 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
**
25766 ATAAATGTATATTTAT
1 ATAAAAATATATTTAT
25782 AT
1 AT
25784 TTAGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:26532 original size:130 final size:130
Alignment explanation
Indices: 26328--26575 Score: 415
Period size: 130 Copynumber: 1.9 Consensus size: 130
26318 AATTTTCTTC
* *
26328 TAATTAGGTGGTGACATGTGTCACCAATAACACATATTATGATCATGTGTTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
* **
26393 CTTGGTTAAATGATTAATTTATTAAATTTAATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATTAAATTTAATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * *
26458 TAATTAGGTGGTGACATGTGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
*
26523 CCTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAAATTTAATTTAATTTAGGACCAAATTGAT
26576 TATATAAATA
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (130 bp):
TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
CCTAATTAAATGATTAATTTATTAAATTTAATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:27022 original size:35 final size:35
Alignment explanation
Indices: 26972--27047 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
26962 AATTGAATTT
* *
26972 AATTGAATTATTTTGGAATTTAGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
*
27007 AATTGAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
27042 AATTGA
1 AATTGA
27048 GGACTGTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.01, G:0.24, T:0.39
Consensus pattern (35 bp):
AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
Found at i:27397 original size:2 final size:2
Alignment explanation
Indices: 27390--27431 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
27380 ATAAATGTGA
27390 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27432 TATTTTTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28710 original size:2 final size:2
Alignment explanation
Indices: 28703--28733 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
28693 TATTTTTGAA
28703 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
28734 TTTTGGTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:31427 original size:2 final size:2
Alignment explanation
Indices: 31420--31467 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
31410 CTCTATCTAA
31420 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31462 AT AT AT
1 AT AT AT
31468 CCTTTTTATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:40409 original size:11 final size:11
Alignment explanation
Indices: 40393--40431 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
40383 TATATATTAA
40393 TAAATTTAATT
1 TAAATTTAATT
* *
40404 TAAATTAAATA
1 TAAATTTAATT
*
40415 TATATTTAATT
1 TAAATTTAATT
40426 TAAATT
1 TAAATT
40432 AAATATATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TAAATTTAATT
Found at i:40422 original size:22 final size:22
Alignment explanation
Indices: 40396--40484 Score: 110
Period size: 22 Copynumber: 4.1 Consensus size: 22
40386 ATATTAATAA
40396 ATTTAATTTAAATTAAATATAT
1 ATTTAATTTAAATTAAATATAT
40418 ATTTAATTTAAATTAAATATAT
1 ATTTAATTTAAATTAAATATAT
* * * *
40440 ATAT-ATATATA-TATATATAT
1 ATTTAATTTAAATTAAATATAT
*
40460 ATTTATATTTAATTTAAATATAT
1 ATTTA-ATTTAAATTAAATATAT
40483 AT
1 AT
40485 ATACCCGGCC
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
20 11 0.20
21 5 0.09
22 29 0.53
23 10 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTAATTTAAATTAAATATAT
Found at i:40441 original size:2 final size:2
Alignment explanation
Indices: 40434--40487 Score: 65
Period size: 2 Copynumber: 27.5 Consensus size: 2
40424 TTTAAATTAA
* * *
40434 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT TT A- AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
40475 AA AT AT AT AT AT A
1 AT AT AT AT AT AT A
40488 CCCGGCCCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:40660 original size:25 final size:25
Alignment explanation
Indices: 40613--40660 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
40603 ATCTCCGCGG
* *
40613 TTTTTAAACGGGGACGGATATGGAC
1 TTTTTAAACGGAGACGGAGATGGAC
*
40638 TTTTTAAACGGAGACGGGGATGG
1 TTTTTAAACGGAGACGGAGATGG
40661 GAGACCAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.10, G:0.35, T:0.27
Consensus pattern (25 bp):
TTTTTAAACGGAGACGGAGATGGAC
Found at i:41009 original size:14 final size:14
Alignment explanation
Indices: 40987--41017 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
40977 CATGTTTAAG
*
40987 TTTTTAAATAATTA
1 TTTTAAAATAATTA
41001 TTTTAAAATAATTA
1 TTTTAAAATAATTA
41015 TTT
1 TTT
41018 CAGTCATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTTAAAATAATTA
Found at i:41169 original size:32 final size:32
Alignment explanation
Indices: 41133--41199 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
41123 TTATAGTTCT
* *
41133 ATAGATTTTAATGATTGTTTTATAAAAATTTG
1 ATAGAATTTAATGATTATTTTATAAAAATTTG
**
41165 ATAGAATTTAATGATTATTTTATAACTATTTG
1 ATAGAATTTAATGATTATTTTATAAAAATTTG
41197 ATA
1 ATA
41200 CATGTGAGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.39, C:0.01, G:0.10, T:0.49
Consensus pattern (32 bp):
ATAGAATTTAATGATTATTTTATAAAAATTTG
Found at i:41885 original size:58 final size:58
Alignment explanation
Indices: 41775--41940 Score: 219
Period size: 58 Copynumber: 2.8 Consensus size: 58
41765 ACAAAGGTAG
* *
41775 AAATTTATGATGAGGATCAAGATA-AATTTTTTACTACCTTCGTCGATC-TTTAACTTGA
1 AAATTTATGTTGAGGATCAAGGTAGAATTTTTT--TACCTTCGTCGATCTTTTAACTTGA
* * *
41833 AAATTTATGTTAATGATCAAGGTAGAATTTTTTTACCTTCGTTGATCTTTTAACTTGA
1 AAATTTATGTTGAGGATCAAGGTAGAATTTTTTTACCTTCGTCGATCTTTTAACTTGA
* * *
41891 AATTTTATGTTGAGGATCAAGGTAGAAAATTTTCTACCTTCGTCGATCTT
1 AAATTTATGTTGAGGATCAAGGTAG-AATTTTTTTACCTTCGTCGATCTT
41941 GTTCACTATA
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
57 13 0.14
58 52 0.55
59 29 0.31
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (58 bp):
AAATTTATGTTGAGGATCAAGGTAGAATTTTTTTACCTTCGTCGATCTTTTAACTTGA
Found at i:44676 original size:29 final size:29
Alignment explanation
Indices: 44644--44713 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
44634 TTGCATTTAG
44644 GTCCCCCAACTTTTAAA-ACTTGCAATACA
1 GTCCCCCAACTTTTAAACA-TTGCAATACA
* ** **
44673 GTCCCCCAACATTTATCCATTGCAATATG
1 GTCCCCCAACTTTTAAACATTGCAATACA
44702 GTCCCCCAACTT
1 GTCCCCCAACTT
44714 AAACAACCGT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 33 0.97
30 1 0.03
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.29
Consensus pattern (29 bp):
GTCCCCCAACTTTTAAACATTGCAATACA
Found at i:44905 original size:23 final size:23
Alignment explanation
Indices: 44835--44905 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 23
44825 TTCTAAACCC
44835 CAAATTCCAAAGTAATTCAATTT
1 CAAATTCCAAAGTAATTCAATTT
*
44858 ---ATTCTAAATAGTAAATTC-ATGTT
1 CAAATTC-CAA-AGT-AATTCAAT-TT
44881 CAAATTCCAAAGTAATTCAATTT
1 CAAATTCCAAAGTAATTCAATTT
44904 CA
1 CA
44906 TTTTAAACCC
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
20 4 0.11
21 2 0.05
22 5 0.13
23 16 0.42
24 5 0.13
25 2 0.05
26 4 0.11
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.37
Consensus pattern (23 bp):
CAAATTCCAAAGTAATTCAATTT
Found at i:44921 original size:35 final size:35
Alignment explanation
Indices: 44882--44956 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
44872 ATTCATGTTC
* * *
44882 AAATTCCAAAGTAATTCAATTTCATTTTAAACCCT
1 AAATTCCAAAATAATTCAATTACATTCTAAACCCT
*
44917 AAATTCCAAAATAATTCAATTACATTCTAAACCTT
1 AAATTCCAAAATAATTCAATTACATTCTAAACCCT
44952 AAATT
1 AAATT
44957 GAAGTATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.44, C:0.19, G:0.01, T:0.36
Consensus pattern (35 bp):
AAATTCCAAAATAATTCAATTACATTCTAAACCCT
Found at i:45001 original size:33 final size:34
Alignment explanation
Indices: 44964--45047 Score: 107
Period size: 35 Copynumber: 2.5 Consensus size: 34
44954 ATTGAAGTAT
** *
44964 TTTAGAATTCAATTGAATTA-TTGGAATTTAGGG
1 TTTAGAATAAAATTGAATTACTTAGAATTTAGGG
*
44997 TTTAGAATAAAATTGAATTACTTTAGAATTTGGGG
1 TTTAGAATAAAATTGAATTAC-TTAGAATTTAGGG
*
45032 TTTAGAATGAAATTGA
1 TTTAGAATAAAATTGA
45048 GGGCTGTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
33 18 0.41
35 26 0.59
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.40
Consensus pattern (34 bp):
TTTAGAATAAAATTGAATTACTTAGAATTTAGGG
Done.