Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004153.1 Hibiscus syriacus cultivar Beakdansim tig00009082_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67030

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11531--11643
35
3.2
35
82
3
129
26
4
38
30
1.76
11544--11648
35
3.0
35
87
1
147
26
4
39
29
1.77
12934--12973
17
2.4
17
83
8
55
47
5
15
32
1.66
14168--14230
32
2.0
32
81
12
76
60
0
25
14
1.34
14391--14433
13
3.2
14
83
6
54
39
0
37
23
1.55
18238--18273
14
2.6
14
91
4
56
27
0
47
25
1.52
18238--18276
13
2.9
13
85
7
51
33
0
43
23
1.54
18609--18651
20
2.2
20
91
4
70
51
6
6
34
1.56
22944--22982
18
2.2
18
100
0
78
30
12
30
25
1.93
23491--23532
17
2.5
17
92
0
66
45
7
14
33
1.72
25688--25712
10
2.5
10
100
0
50
24
12
28
36
1.91
28276--28320
23
2.0
23
90
0
72
60
15
13
11
1.60
32504--32560
17
3.3
17
77
2
60
47
5
14
33
1.66
39628--39656
14
2.1
14
93
6
51
0
10
6
82
0.83
40041--40168
36
3.6
36
87
1
179
29
3
38
28
1.72
40088--40145
13
4.7
13
72
12
59
29
0
41
29
1.56
44153--44200
25
1.9
25
91
8
80
0
4
14
81
0.84
46858--46889
16
2.0
16
100
0
64
31
37
6
25
1.81
56040--56151
35
3.2
35
88
1
152
32
3
35
28
1.74
61855--61897
20
2.2
20
87
4
61
32
11
6
48
1.66
62678--62729
6
8.7
6
83
12
63
84
0
15
0
0.62
62684--62729
15
3.1
14
84
9
65
84
0
15
0
0.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62669--62729
29
2.0
31
87
12
92
81
3
14
0
0.80
62956--63000
24
1.9
23
86
13
65
15
17
0
66
1.25

Tables:   1

The End!