Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004154.1 Hibiscus syriacus cultivar Beakdansim tig00009084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73713

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2148--2207
3
19.7
3
86
3
84
40
0
0
60
0.97
3485--3549
23
2.8
23
79
9
78
26
6
3
64
1.32
3485--3548
11
5.6
11
71
20
51
26
4
3
65
1.27
3559--3602
2
22.0
2
100
0
88
50
0
0
50
1.00
5134--5186
16
3.3
15
76
12
52
18
5
1
73
1.12
6877--6904
12
2.3
12
100
0
56
25
7
0
67
1.15
7912--7948
19
2.0
18
89
5
56
45
0
21
32
1.52
12109--12251
75
1.9
75
85
8
202
35
16
16
32
1.90
14677--14752
20
3.2
26
62
30
69
22
25
21
31
1.98
14177--14930
45
16.8
45
93
0
1206
22
22
20
34
1.97
15105--15179
3
24.3
3
86
5
105
40
0
0
60
0.97
15108--15179
25
2.9
25
87
4
110
40
0
0
59
0.97
15120--15192
22
3.2
22
74
14
67
46
0
0
53
1.00
16468--16541
23
3.3
23
77
9
80
28
5
4
62
1.36
20847--20883
16
2.4
16
95
4
67
27
16
10
45
1.80
21028--21054
13
2.1
13
100
0
54
55
0
0
44
0.99
21028--21070
13
3.1
14
86
6
52
55
0
2
41
1.12
21094--21142
23
2.1
23
88
0
71
44
0
8
46
1.33
22744--22930
76
2.5
76
89
0
275
24
30
22
21
1.99
28748--28787
21
1.9
21
89
0
62
25
40
25
10
1.86
31376--31582
76
2.7
77
83
4
251
24
31
22
21
1.98
32271--32312
21
2.0
21
85
4
57
59
11
7
21
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34351--34387
18
2.0
18
89
5
56
13
10
35
40
1.80
34352--34490
43
3.3
43
85
2
127
3
8
44
43
1.52
34379--34495
6
19.3
6
85
1
117
1
7
46
44
1.42
34364--34496
18
7.3
18
83
1
140
3
9
45
42
1.53
34487--34534
13
3.8
13
78
13
55
22
6
27
43
1.77
35282--35311
15
2.0
15
93
0
51
53
10
0
36
1.35
35623--35736
2
61.0
2
67
22
52
48
4
2
44
1.36
35764--35816
21
2.5
21
78
0
61
50
5
5
37
1.50
35891--35978
2
44.0
2
87
4
124
46
2
2
48
1.27
36075--36106
7
4.6
7
92
0
55
15
0
37
46
1.46
36179--36240
27
2.2
29
80
11
76
38
1
8
51
1.41
36422--36481
21
2.9
21
87
2
77
25
0
28
46
1.53
36599--36648
15
3.4
15
73
15
50
50
4
0
46
1.20
36661--37946
4
323.2
4
83
1
1231
45
19
5
28
1.73
37734--37768
10
3.5
10
88
0
52
51
11
0
37
1.38
37767--37828
23
2.6
25
79
5
74
38
17
9
33
1.83
37944--37986
2
21.5
2
100
0
86
51
48
0
0
1.00
41782--41848
25
2.6
25
76
6
64
40
2
1
55
1.24
42670--42706
14
2.7
13
88
12
56
13
5
0
81
0.86
42670--42750
12
6.4
12
73
11
56
18
3
2
75
1.07
42673--42748
23
3.3
22
72
16
66
18
3
2
75
1.08
42795--42871
17
4.2
17
74
18
66
27
3
0
68
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42781--42870
7
12.7
7
72
15
60
26
4
0
68
1.08
42963--43032
22
3.2
23
74
18
60
8
7
5
78
1.09
45089--45263
65
2.8
64
85
4
232
35
20
17
26
1.95
45219--45622
119
3.5
117
85
7
488
33
25
16
24
1.96
47210--47246
14
2.7
13
88
12
56
13
5
0
81
0.86
47347--47417
3
22.7
3
78
8
54
30
4
1
63
1.22
47348--47381
12
2.8
12
100
0
68
32
5
0
61
1.20
47547--47585
14
2.7
14
84
4
51
15
7
5
71
1.26
55897--56034
65
2.1
65
81
5
154
31
23
16
28
1.96
61825--61952
21
6.0
21
71
11
98
27
22
23
26
2.00
61786--61927
44
3.2
44
91
3
216
27
23
22
26
1.99
61811--61928
23
5.3
22
69
15
82
27
24
22
25
2.00
65886--65926
6
6.8
6
100
0
82
17
51
0
31
1.46
69480--69606
25
5.2
25
66
30
94
21
15
31
31
1.94
69470--69617
49
3.0
49
98
0
287
23
16
30
29
1.96
69475--69599
23
5.2
23
66
30
82
22
17
30
29
1.97
72688--72749
18
3.2
20
78
19
62
61
0
1
37
1.06
72743--72878
55
2.5
56
75
17
151
55
2
0
41
1.12

Tables:   1

The End!