genome.fa.s4156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004156.1 Hibiscus syriacus cultivar Beakdansim tig00009094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80075

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488--660	59	2.9	59	85	4	231	32	18	19	29	1.95
807--835	14	2.1	14	93	6	51	34	13	20	31	1.92
2626--2683	30	1.9	30	96	0	107	29	27	10	32	1.90
3525--3593	35	2.0	35	85	0	93	37	1	5	55	1.33
3807--3859	18	2.7	21	75	22	60	64	1	0	33	1.05
3806--3870	20	3.3	21	75	18	59	64	3	0	32	1.09
5763--5836	35	2.1	35	85	2	96	44	20	1	33	1.60
5831--5908	35	2.2	35	80	11	88	37	1	19	42	1.59
14161--14187	8	3.4	8	100	0	54	62	0	25	11	1.28
15849--16037	99	1.9	99	88	0	288	34	16	17	31	1.92
18498--18722	37	6.0	37	70	13	138	37	18	20	23	1.94
18728--19119	55	7.1	55	81	3	387	31	16	22	29	1.96
19471--19524	26	2.1	26	92	0	90	25	37	20	16	1.93
21663--21694	15	2.1	15	100	0	64	34	18	28	18	1.95
28576--28718	64	2.2	63	83	13	168	30	19	23	27	1.98
28576--28755	65	2.8	64	80	9	197	28	17	23	29	1.97
32322--32531	65	3.3	63	76	12	194	27	18	22	31	1.97
34221--34382	65	2.5	65	82	6	197	27	16	25	30	1.97
39103--39129	12	2.2	12	100	0	54	40	0	0	59	0.98
39061--39223	82	2.0	82	90	2	256	34	4	12	47	1.63
42344--42369	2	13.0	2	100	0	52	50	0	0	50	1.00
45311--45335	2	12.5	2	100	0	50	52	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45335--45418	2	42.0	2	100	0	168	50	0	0	50	1.00
47058--47086	15	1.9	15	100	0	58	51	0	0	48	1.00
47062--47086	13	1.9	13	100	0	50	52	0	0	48	1.00
48393--48482	20	4.5	20	97	0	162	38	22	18	20	1.93
48473--48517	20	2.2	20	96	0	81	48	22	8	20	1.76
48393--48502	40	2.8	40	88	5	134	40	21	17	20	1.91
49043--49088	20	2.3	20	96	0	83	50	21	17	10	1.77
49077--49103	14	1.9	14	100	0	54	51	14	14	18	1.76
49104--49157	20	2.8	20	88	2	83	12	16	22	48	1.80
51236--51332	21	4.6	21	87	5	142	23	37	16	22	1.94
51266--51354	42	2.1	42	85	0	115	25	33	17	22	1.96
51635--51696	30	2.1	29	87	3	88	37	4	25	32	1.77
52728--52761	14	2.3	15	85	10	52	41	0	14	44	1.45
52955--53003	20	2.5	20	96	0	89	40	20	18	20	1.91
53014--53127	49	2.3	49	90	0	174	24	19	18	37	1.94
61109--61170	23	2.9	21	85	7	81	20	35	25	17	1.95
61152--61193	22	1.9	22	90	0	66	23	42	23	9	1.83
61677--61708	11	2.9	11	100	0	64	37	9	6	46	1.61
65291--65354	24	2.7	24	100	0	128	37	20	21	20	1.94
65480--65513	12	2.8	12	90	0	50	14	0	29	55	1.40
66108--66145	16	2.5	15	84	12	51	65	0	5	28	1.14
66283--66410	20	6.5	19	72	14	73	35	14	21	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66302--66455	40	3.8	40	77	6	150	31	13	25	29	1.94
66423--66471	19	2.5	19	86	3	62	18	14	32	34	1.91
66795--66886	31	3.0	31	93	0	157	41	14	21	22	1.89
70429--70469	16	2.5	17	81	18	52	46	4	7	41	1.53
71884--72021	61	2.3	61	87	3	190	42	7	6	42	1.60
74439--74464	3	8.7	3	100	0	52	30	0	0	69	0.89
78852--78923	23	3.2	23	62	33	57	33	19	4	43	1.70
78837--79060	44	5.1	44	90	1	297	33	20	7	38	1.80
79244--79747	233	2.2	234	91	1	834	29	24	10	35	1.88
79146--79737	59	10.1	59	79	6	564	29	23	10	35	1.89

Tables:   1

The End!