genome.fa.s4158.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004158.1 Hibiscus syriacus cultivar Beakdansim tig00009096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93257

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4063--4128	13	5.2	13	67	20	50	25	22	7	43	1.79
4461--4617	64	2.5	62	78	8	147	27	20	20	31	1.97
10681--10725	21	2.1	22	91	4	74	55	0	6	37	1.26
14034--14082	2	24.5	2	100	0	98	48	0	0	51	1.00
14320--14418	41	2.4	42	83	11	125	35	18	19	27	1.95
14410--14547	43	3.2	43	90	2	206	28	23	21	26	1.99
17355--17391	2	18.5	2	100	0	74	51	0	0	48	1.00
26865--26942	22	3.5	22	83	8	104	11	29	16	42	1.83
38732--38889	21	7.8	20	72	7	86	38	25	17	18	1.92
38856--39125	20	13.5	20	88	1	299	37	25	18	19	1.94
39808--39854	24	2.0	24	87	8	69	25	14	21	38	1.92
42297--42466	19	9.7	19	76	19	181	45	18	21	15	1.85
42297--42466	52	3.2	52	94	2	279	45	18	21	15	1.85
42283--42460	33	5.2	33	80	15	161	46	18	21	14	1.84
42475--42572	19	5.4	19	84	13	143	14	22	17	45	1.84
42456--42572	53	2.2	53	96	1	218	13	24	17	43	1.86
42679--42715	14	2.6	14	91	0	65	45	21	0	32	1.52
43055--43254	93	2.2	93	99	0	391	46	19	12	22	1.83
44960--45049	14	5.7	14	69	23	63	44	22	23	10	1.82
44952--45066	33	3.5	33	97	0	221	46	20	22	10	1.80
44974--45071	19	5.7	19	69	22	90	44	21	22	11	1.83
45067--45180	33	3.5	33	96	0	201	10	21	21	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45083--45172	14	5.7	14	67	23	54	11	22	22	44	1.84
45157--45253	21	4.7	21	88	2	151	11	24	16	47	1.79
45157--45254	41	2.4	42	91	1	153	11	25	16	46	1.80
45333--45403	33	2.2	33	92	0	115	47	18	22	11	1.80
45583--45637	22	2.5	22	81	0	74	20	16	40	23	1.91
45784--45937	20	7.7	20	81	7	168	18	18	26	37	1.93
45783--45937	40	3.8	40	82	4	186	18	18	26	37	1.93
45924--46002	21	3.8	21	75	0	77	24	17	22	35	1.95
45904--46002	42	2.4	43	78	8	107	22	18	22	37	1.94
52366--52469	51	2.0	51	98	0	199	22	15	24	38	1.92
55309--55408	30	3.3	30	81	2	121	46	10	4	40	1.56
56909--57134	114	2.0	114	94	0	398	26	12	30	31	1.93
59765--59795	16	1.9	16	93	0	53	51	29	6	12	1.65
63486--63511	3	8.7	3	100	0	52	65	0	0	34	0.93
73941--74239	164	1.8	164	89	0	472	25	17	15	41	1.89
74155--74269	56	2.1	56	84	0	149	29	12	15	42	1.83
75878--75912	18	1.9	18	94	0	61	22	2	22	51	1.61
76238--76324	43	2.0	43	95	0	156	34	19	12	33	1.90
77656--77815	85	1.9	85	92	2	268	41	10	14	33	1.79
79032--79972	200	4.7	200	95	0	1648	30	19	14	35	1.92
80194--80254	19	3.3	18	90	2	68	54	11	0	34	1.37
80206--80254	19	2.6	19	96	0	89	57	10	0	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80833--80860	4	7.0	4	100	0	56	50	25	0	25	1.50
82060--82125	33	2.0	33	90	0	105	22	48	0	28	1.51
82170--82222	21	2.5	21	96	0	97	15	32	9	43	1.78
84368--84835	177	2.6	178	89	3	665	26	17	14	41	1.88
90423--90508	35	2.5	35	88	0	118	41	19	2	36	1.65
90479--90519	21	2.0	21	90	0	64	46	14	2	36	1.58
90516--90590	35	2.1	35	90	0	114	36	1	18	44	1.59
90567--90638	24	3.0	24	66	28	62	37	5	13	43	1.68

Tables:   1

The End!