genome.fa.s4159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004159.1 Hibiscus syriacus cultivar Beakdansim tig00009097_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74043

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252--292	21	2.0	21	95	0	73	24	21	29	24	1.99
4830--4881	24	2.2	24	86	6	70	61	21	5	11	1.50
15685--15731	18	2.7	18	86	3	69	27	31	10	29	1.90
16230--16305	24	3.2	24	88	7	118	44	15	13	26	1.83
16207--16324	48	2.5	48	80	4	141	42	18	13	25	1.87
18563--18602	16	2.5	16	95	0	71	20	12	22	45	1.84
36568--36641	37	2.0	37	97	0	139	29	14	16	39	1.88
37528--37581	27	2.0	26	82	10	65	55	1	1	40	1.21
41569--41700	37	3.7	35	83	8	142	43	12	12	31	1.78
42390--42483	4	22.2	4	77	18	61	20	1	3	75	1.00
42390--42478	5	18.6	5	81	12	66	20	1	3	75	1.01
45493--45574	8	10.1	8	75	12	60	78	6	15	0	0.95
45514--45541	11	2.5	11	100	0	56	85	7	7	0	0.73
45489--45591	28	3.6	28	73	16	95	76	6	15	0	1.04
45496--45591	9	10.2	9	70	20	54	78	6	14	1	1.00
45489--45602	27	4.0	26	71	23	72	75	6	16	1	1.09
46223--46277	22	2.5	22	90	0	92	38	25	10	25	1.88
47138--47267	37	3.6	36	84	6	156	27	20	12	40	1.88
47099--47358	136	1.9	136	84	1	351	28	19	13	38	1.90
47168--47423	102	2.5	99	82	3	314	27	19	13	39	1.90
47327--47493	68	2.5	68	86	2	223	29	22	10	38	1.87
48129--48548	105	4.0	105	88	4	582	34	25	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49808--49860	22	2.3	23	78	18	58	28	5	0	66	1.15
49894--49958	5	13.4	5	80	9	64	18	1	4	75	1.05
57253--57295	12	3.5	12	75	6	50	69	0	0	30	0.88
57242--57304	25	2.5	26	94	5	119	61	0	0	38	0.96
57349--57441	44	2.1	45	93	2	161	47	9	6	36	1.62
58711--58736	13	2.0	13	100	0	52	30	23	7	38	1.83
60022--60057	11	3.4	11	92	3	56	47	0	0	52	1.00
60914--61068	33	4.5	33	83	6	175	12	21	19	45	1.84
61022--61068	20	2.3	20	82	13	69	12	23	14	48	1.78
62454--62491	20	2.0	20	89	5	60	18	23	21	36	1.95
62443--62491	19	2.5	19	83	3	62	16	22	22	38	1.92
62443--62497	20	2.8	18	78	13	56	18	21	20	40	1.92
64804--64828	12	2.1	12	100	0	50	0	28	0	72	0.86
65003--65056	24	2.2	24	93	0	90	40	20	14	24	1.90
65611--65644	12	2.9	12	91	4	52	38	5	38	17	1.74
65803--65910	20	5.4	20	93	0	162	25	20	29	24	1.99
65798--65944	20	7.3	20	85	4	161	23	19	27	29	1.98
65878--65955	41	1.9	41	89	0	120	20	17	23	38	1.93
65962--66011	21	2.4	21	80	6	66	34	18	26	22	1.96
66489--66530	20	2.1	20	86	0	57	52	0	0	47	1.00
66516--66559	22	2.0	22	86	8	63	54	0	0	45	0.99
66499--66589	26	3.5	26	75	11	71	53	2	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69750--70409	117	5.7	117	87	1	925	23	23	21	31	1.98
69750--70409	232	2.8	232	93	0	1088	23	23	21	31	1.98
70458--70508	21	2.3	23	93	6	88	47	0	17	35	1.48
70458--70515	21	2.6	22	89	5	64	51	0	15	32	1.44
70664--70708	14	3.2	14	96	0	81	26	2	15	55	1.52
73117--73175	16	3.8	16	75	11	59	59	0	0	40	0.97
73117--73186	30	2.4	28	83	7	86	62	0	0	37	0.95

Tables:   1

The End!