Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000416.1 Hibiscus syriacus cultivar Beakdansim tig00000763_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93602

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1295--1328
18
1.9
17
88
5
50
52
14
5
26
1.64
4246--4294
22
2.2
22
100
0
98
20
16
48
14
1.80
5051--5354
149
2.0
148
96
0
554
33
20
17
28
1.95
6556--6600
21
2.1
21
87
0
63
15
24
28
31
1.96
9001--9214
86
2.5
87
93
2
371
42
13
7
36
1.73
14466--14504
6
6.5
6
81
0
51
46
15
5
33
1.68
34700--34747
23
2.1
23
100
0
96
20
18
16
43
1.88
36041--36066
8
3.2
8
100
0
52
26
0
11
61
1.30
36041--36074
16
2.1
16
88
0
50
29
2
8
58
1.43
37765--37805
21
2.0
21
85
0
55
17
0
14
68
1.22
38873--38918
23
2.0
23
95
4
85
39
13
17
30
1.87
39725--39787
28
2.2
28
78
13
67
71
1
3
23
1.09
40111--40197
33
2.6
33
87
5
122
26
10
21
41
1.85
40245--40313
8
8.6
8
71
23
56
71
0
0
28
0.87
40247--40310
3
20.7
3
81
15
53
70
0
0
29
0.88
40656--41637
84
11.8
84
80
4
940
25
19
24
30
1.98
40700--41641
249
3.8
249
93
1
1519
25
19
24
30
1.98
41784--42429
110
5.9
110
90
0
967
25
18
22
33
1.97
46384--46454
33
2.2
33
89
0
106
29
11
18
40
1.85
46502--46575
9
8.8
8
78
19
71
71
0
0
28
0.86
46504--46575
3
24.3
3
78
18
64
70
0
0
29
0.87
46505--46575
16
4.7
16
77
21
73
70
0
0
29
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46503--46575
38
1.9
37
86
13
105
71
0
0
28
0.87
46690--46774
42
2.0
41
93
2
143
25
16
24
32
1.96
49173--49221
2
24.5
2
100
0
98
48
0
0
51
1.00
58686--58855
21
8.3
21
70
5
132
25
20
20
33
1.97
58711--58877
40
4.1
40
87
3
262
25
19
18
35
1.95
58684--58877
61
3.2
60
72
5
183
25
20
19
35
1.95
58690--58852
82
2.0
82
92
0
272
23
20
21
34
1.97
58804--58866
19
3.2
19
69
8
63
30
20
17
31
1.96
59691--59823
21
6.3
21
79
3
142
38
21
21
18
1.94
59698--59820
63
2.0
63
86
0
174
37
21
21
19
1.94
65220--65370
43
3.5
42
78
10
146
47
5
19
27
1.71
65511--65538
14
2.0
14
100
0
56
71
0
7
21
1.09
65541--65643
44
2.3
45
72
14
106
64
3
6
25
1.36
77444--77493
23
2.2
23
100
0
100
16
18
22
44
1.87
77452--77501
23
2.4
21
87
12
68
20
12
20
48
1.80
86666--86694
15
1.9
15
100
0
58
34
10
13
41
1.79
93103--93132
16
1.9
16
93
6
53
30
10
0
60
1.30

Tables:   1

The End!