genome.fa.s4160.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004160.1 Hibiscus syriacus cultivar Beakdansim tig00009098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65640

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9062--9107	24	1.9	24	100	0	92	50	6	4	39	1.48
9203--9228	2	13.0	2	100	0	52	50	0	0	50	1.00
9293--9403	49	2.2	50	93	3	188	55	9	5	28	1.54
9283--9403	51	2.4	52	87	8	185	56	9	4	28	1.53
9233--9580	177	1.9	183	86	6	494	50	12	7	29	1.68
9474--9689	102	2.1	102	94	0	378	50	11	7	30	1.66
9676--9730	2	27.5	2	100	0	110	50	0	0	49	1.00
9474--9685	49	4.2	49	91	4	334	50	11	8	29	1.66
11632--11674	3	14.7	3	85	4	61	60	2	0	37	1.10
12810--12847	20	1.9	20	88	0	58	55	10	0	34	1.34
12810--12863	28	1.9	28	81	7	65	57	9	3	29	1.47
13492--13624	58	2.3	59	80	5	144	42	6	19	30	1.77
16970--17177	39	5.5	39	86	6	277	46	3	6	43	1.46
17211--17274	4	15.8	4	82	9	76	23	0	1	75	0.90
18517--18545	13	2.3	13	94	5	51	10	6	0	82	0.83
19693--19747	28	2.0	28	92	0	92	38	23	7	30	1.82
21954--22009	28	2.0	28	100	0	112	17	21	10	50	1.77
29369--29409	21	2.1	18	86	13	55	51	4	2	41	1.36
29367--29412	19	2.5	18	83	13	58	52	6	2	39	1.40
32990--33353	178	2.0	180	98	1	705	39	9	14	36	1.79
34182--34219	15	2.7	15	92	8	62	18	13	5	63	1.48
34899--34946	13	3.5	13	78	15	60	62	0	2	35	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37440--37525	39	2.2	39	97	0	163	18	12	8	60	1.56
38395--38986	276	2.1	276	82	4	703	30	14	13	41	1.84
38390--39003	138	4.4	139	81	5	638	30	14	13	42	1.83
44318--44361	19	2.3	19	92	0	70	31	6	29	31	1.84
45169--45221	21	2.5	21	82	11	63	9	7	7	75	1.19
48296--48329	12	2.8	12	95	0	59	44	8	23	23	1.81
57643--57808	44	3.8	44	78	2	172	32	18	16	31	1.94
57645--57808	88	1.9	88	80	2	195	32	18	17	31	1.94
58156--58191	19	1.9	18	88	5	54	75	0	13	11	1.06
58206--58241	19	1.9	19	94	5	65	77	0	16	5	0.94
58250--58308	22	2.5	23	81	15	75	64	3	18	13	1.42
60895--60943	22	2.2	22	82	10	64	34	20	4	40	1.71
61400--61424	13	1.9	13	100	0	50	32	12	0	56	1.36
61468--62071	138	4.4	138	82	3	686	30	14	14	40	1.86

Tables:   1

The End!