genome.fa.s4161.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004161.1 Hibiscus syriacus cultivar Beakdansim tig00009102_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77420

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457--514	28	2.0	30	83	10	75	44	8	0	46	1.34
469--529	27	2.3	27	81	10	72	44	4	0	50	1.23
469--522	29	1.9	27	85	7	72	46	5	0	48	1.25
493--547	21	2.6	21	80	16	60	52	3	0	43	1.18
492--547	20	2.9	20	82	10	64	51	3	0	44	1.18
495--548	22	2.5	22	82	14	67	51	3	0	44	1.19
1074--1454	128	3.0	128	78	7	299	31	17	18	33	1.94
6634--6678	17	2.6	17	92	0	72	31	6	31	31	1.83
8233--8284	12	4.0	12	74	16	50	61	0	1	36	1.07
9930--10008	6	13.2	6	71	0	59	5	22	13	58	1.55
9930--10002	30	2.4	31	81	6	96	5	21	13	58	1.55
9962--10006	12	3.8	12	87	0	72	2	22	15	60	1.46
13656--13685	13	2.2	14	94	5	53	0	23	0	76	0.78
15731--15769	15	2.5	16	91	4	62	30	20	7	41	1.80
18305--18347	19	2.2	20	84	16	54	55	0	2	41	1.12
18305--18347	12	4.1	11	83	16	56	55	0	2	41	1.12
20192--20269	23	3.4	23	89	0	120	15	17	35	30	1.91
24299--24434	24	5.7	24	93	0	218	21	19	23	35	1.96
24642--24670	2	14.5	2	100	0	58	48	0	0	51	1.00
25378--25423	17	2.7	17	79	0	56	52	0	0	47	1.00
25379--25461	34	2.4	34	82	8	96	46	0	0	53	1.00
25377--25468	40	2.4	38	80	8	114	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25377--25489	40	2.8	41	80	9	110	46	0	0	53	1.00
26224--26358	40	3.4	40	87	1	191	30	27	20	22	1.98
29820--29870	17	3.0	17	94	0	84	17	23	41	17	1.90
29833--29889	29	2.0	29	92	0	96	19	24	38	17	1.93
29854--29881	12	2.3	12	100	0	56	21	25	35	17	1.95
29820--29889	17	4.4	17	77	17	78	18	24	40	17	1.91
29883--29952	19	3.6	19	86	1	86	25	28	27	18	1.98
29885--29952	9	7.0	10	69	12	52	26	29	25	19	1.98
29921--29958	20	1.9	20	88	0	58	36	21	26	15	1.93
37072--37121	13	4.0	13	80	17	61	22	28	34	16	1.95
37068--37126	20	3.2	19	88	7	77	20	27	35	16	1.94
37094--37168	17	4.4	17	96	0	123	17	24	41	17	1.90
37068--37105	7	5.6	7	93	6	69	26	28	28	15	1.96
42494--42608	40	2.9	40	90	2	187	32	28	17	21	1.96
44016--44082	30	2.3	30	81	2	73	32	20	7	38	1.81
45358--45386	2	15.0	2	92	7	51	48	0	0	51	1.00
45467--45515	23	2.1	24	88	11	75	44	6	4	44	1.47
45811--45837	14	1.9	14	100	0	54	48	0	0	51	1.00
46146--46199	22	2.4	22	82	11	65	46	3	1	48	1.30
46104--46186	17	4.8	17	73	19	57	44	2	1	51	1.22
53209--53242	14	2.3	15	90	5	52	52	14	20	11	1.73
54751--54807	28	2.1	27	83	6	71	24	3	0	71	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54748--54806	26	2.3	26	79	5	66	25	5	0	69	1.09
54751--54808	27	2.2	26	81	9	64	25	3	0	70	1.03
56165--56223	21	2.8	21	78	0	64	22	35	28	13	1.92
57019--57061	19	2.3	19	87	0	59	46	0	9	44	1.35
56990--57125	45	2.9	46	79	15	127	44	2	8	44	1.48
57019--57125	47	2.2	49	83	9	141	44	0	7	46	1.37
57062--57112	20	2.4	21	80	9	59	49	1	5	43	1.38
57146--57173	3	9.3	3	100	0	56	32	0	0	67	0.91
60131--60170	20	2.1	18	86	9	53	10	10	2	77	1.08
65317--65357	19	2.2	19	91	8	66	21	29	19	29	1.98
66265--66330	28	2.3	30	82	15	95	45	6	7	40	1.57
66275--66374	24	4.2	24	77	15	100	45	3	7	45	1.46
66275--66403	24	5.3	23	74	19	93	44	3	6	45	1.44
66303--66373	20	3.3	20	77	19	72	46	1	7	45	1.39
66326--66406	24	3.0	27	87	8	96	44	1	6	48	1.35
66414--66463	7	7.9	7	85	14	65	0	22	0	78	0.76
66414--66463	12	3.9	13	82	17	61	0	22	0	78	0.76
66459--66504	19	2.7	18	81	18	62	19	4	0	76	0.96
67855--67893	18	2.2	19	86	9	55	15	5	7	71	1.26
72682--72729	16	2.8	17	87	12	64	56	0	0	43	0.99
73312--73346	16	2.2	16	89	0	52	28	0	0	71	0.86
73522--73589	31	2.2	31	97	0	127	42	10	23	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73830--73882	18	2.9	18	77	8	54	41	15	0	43	1.46
74031--74138	26	4.0	26	75	14	87	51	0	4	42	1.28
74063--74138	24	3.1	23	81	9	80	50	0	5	44	1.24
74045--74361	30	11.2	29	68	16	148	49	0	8	40	1.40
74239--74362	28	4.4	29	72	10	114	50	0	12	37	1.46
74242--74360	54	2.1	57	83	9	147	50	0	11	36	1.45
74348--74389	18	2.3	19	79	4	50	42	0	11	45	1.41
75192--75236	2	22.5	2	100	0	90	51	0	0	48	1.00
75236--75262	2	13.5	2	100	0	54	51	0	48	0	1.00

Tables:   1

The End!