Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004162.1 Hibiscus syriacus cultivar Beakdansim tig00009103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63100

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1371--1406
14
2.6
14
95
0
63
30
0
25
44
1.54
1565--1715
19
8.7
19
63
21
71
15
22
19
42
1.89
1569--1695
33
3.9
32
86
8
184
14
22
18
43
1.87
1562--1694
66
2.0
66
95
0
239
16
22
18
42
1.89
3973--3997
12
2.1
12
100
0
50
0
28
0
72
0.86
5025--5098
20
3.7
20
75
10
69
36
22
18
21
1.95
5022--5113
41
2.3
40
84
1
121
40
21
16
21
1.91
5045--5112
20
3.3
20
77
2
73
41
22
16
20
1.90
5309--5384
20
3.9
20
71
13
68
42
21
18
18
1.90
5408--5461
14
3.5
14
77
22
63
11
20
20
48
1.80
5390--5460
33
2.2
33
84
0
88
19
19
21
39
1.93
7034--7125
42
2.2
42
86
1
132
22
15
41
20
1.90
7486--7552
20
3.4
20
83
2
82
34
25
25
14
1.94
7578--7644
19
3.8
19
71
18
63
10
17
22
49
1.77
7583--7674
33
2.8
33
89
0
139
10
16
21
51
1.75
7616--7674
19
3.4
19
66
22
56
11
16
20
50
1.76
7668--7713
20
2.3
20
92
0
74
15
19
26
39
1.91
8248--8295
18
2.7
18
90
0
78
14
14
45
25
1.83
9614--9656
20
2.2
20
87
8
61
53
20
16
9
1.70
9934--9977
22
2.0
22
95
0
79
18
15
45
20
1.85
10170--10236
20
3.3
20
87
0
98
28
11
29
29
1.92
10255--10297
20
2.2
20
86
0
59
23
20
16
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13811--13886
32
2.4
32
82
8
84
47
2
10
39
1.52
34337--34364
14
2.0
14
100
0
56
14
14
14
57
1.66
34653--34692
10
4.0
10
90
0
62
7
12
22
57
1.60
34652--34691
20
2.0
20
95
0
71
7
15
22
55
1.65
34766--34796
16
1.9
16
93
0
53
9
9
22
58
1.59
36822--36878
20
2.9
19
73
16
62
49
1
0
49
1.11
36812--36899
38
2.2
40
83
13
112
39
2
2
55
1.25
36812--36900
34
2.4
38
78
15
98
40
2
2
55
1.25
39543--39595
21
2.5
21
81
6
63
45
26
0
28
1.54
39539--39602
21
3.0
21
75
4
58
46
26
0
26
1.53
39744--39785
3
14.0
3
100
0
84
66
0
0
33
0.92
49403--49434
17
1.9
17
93
6
57
65
0
0
34
0.93
50886--50921
14
2.6
14
100
0
72
63
8
27
0
1.23
51175--51205
2
15.5
2
100
0
62
0
0
48
51
1.00
60456--60481
3
8.7
3
100
0
52
69
0
0
30
0.89

Tables:   1

The End!