genome.fa.s4164.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004164.1 Hibiscus syriacus cultivar Beakdansim tig00009105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140292

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11968--12015	12	3.9	12	80	2	60	85	0	4	10	0.73
11965--12021	18	3.1	18	85	14	80	82	0	5	12	0.82
11968--12026	19	3.2	17	83	7	64	83	0	6	10	0.82
12682--12755	33	2.2	33	95	0	130	35	18	13	32	1.90
12900--13095	44	4.4	44	70	6	135	31	22	18	27	1.97
12888--14079	133	9.0	133	88	1	1633	30	21	19	28	1.98
13301--13769	44	10.6	44	68	9	200	28	22	21	27	1.99
19589--19640	20	2.6	20	75	6	52	30	9	30	28	1.89
26040--26092	20	2.7	19	85	11	63	26	13	30	30	1.94
28994--29229	114	2.1	114	94	0	418	36	16	7	40	1.77
30092--30351	65	4.0	65	88	2	414	32	22	15	30	1.94
33026--33109	29	2.8	28	75	12	78	33	14	4	47	1.65
35478--35551	35	2.1	36	82	7	89	33	17	24	24	1.96
37027--37060	12	2.8	12	81	0	50	26	20	0	52	1.46
37087--37187	19	5.3	19	77	3	96	32	16	4	45	1.69
41492--41525	16	2.1	17	88	5	52	64	0	2	32	1.08
41761--41971	99	2.2	97	87	1	305	42	9	9	38	1.70
43078--43170	38	2.5	37	89	5	143	37	39	11	10	1.77
45744--45806	33	1.9	33	96	3	119	61	7	3	26	1.39
50803--50840	12	3.0	13	80	7	51	76	2	0	21	0.91
53198--53239	19	2.3	19	87	4	59	21	7	11	59	1.56
55462--55528	33	2.0	33	97	0	125	47	17	4	29	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55523--55564	21	2.0	21	95	0	75	47	7	14	30	1.71
57902--57926	13	1.9	13	100	0	50	48	16	16	20	1.82
61432--61489	28	2.1	28	90	0	89	15	18	15	50	1.79
61437--61485	14	3.5	14	78	10	64	14	16	16	53	1.74
61437--61511	14	5.4	14	75	15	57	14	18	18	48	1.82
62078--62107	11	2.7	11	94	0	51	50	3	0	46	1.18
67438--67499	21	2.8	22	87	4	81	20	35	24	19	1.96
72116--72144	14	2.1	14	100	0	58	27	37	6	27	1.82
73908--74089	55	3.2	57	87	2	251	32	8	18	40	1.82
75938--76026	21	4.3	21	80	8	119	37	17	22	22	1.94
76017--76154	41	3.4	41	74	6	127	34	24	16	23	1.95
75938--76072	62	2.2	62	87	2	191	36	20	22	20	1.95
76021--76134	20	5.7	20	74	6	86	31	26	17	24	1.97
76321--76364	22	2.0	22	100	0	88	22	40	13	22	1.89
76643--76685	20	2.2	20	95	0	77	4	18	18	58	1.56
76822--76876	25	2.2	24	78	15	58	20	9	18	52	1.71
78569--78614	20	2.3	20	84	0	56	36	23	21	17	1.94
78580--78624	20	2.3	20	88	3	74	37	17	24	20	1.93
78588--78704	19	6.6	19	71	19	92	44	21	20	13	1.86
78608--78699	33	2.8	33	96	0	166	48	21	17	11	1.79
78624--78688	14	4.4	14	77	19	69	50	23	15	10	1.75
78751--78796	20	2.3	20	96	0	83	15	26	26	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79160--79248	39	2.2	42	84	6	121	22	39	15	22	1.92
80658--80696	14	2.8	14	84	0	51	35	0	17	46	1.49
80823--80876	14	3.5	14	77	22	63	48	20	20	11	1.80
80909--80988	20	4.0	20	77	8	90	17	22	20	40	1.92
81210--81259	20	2.5	20	76	0	64	24	18	20	38	1.93
81286--81337	20	2.5	21	87	3	70	21	23	17	38	1.93
81534--81575	12	3.7	12	81	9	52	16	40	7	35	1.76
82116--82175	24	2.5	24	80	0	75	26	16	18	38	1.92
82350--82384	12	2.9	12	100	0	70	74	0	25	0	0.82
84678--84742	19	3.7	19	74	19	77	44	20	23	12	1.84
84658--84742	33	2.4	36	78	17	104	43	21	21	14	1.87
84863--84899	14	2.6	14	91	0	65	45	24	0	29	1.53
86251--86317	21	3.2	21	68	4	55	19	20	35	23	1.95
86591--86774	91	2.0	92	90	5	293	47	18	11	22	1.81
88458--88598	19	7.8	19	73	17	113	43	20	23	12	1.85
88458--88603	33	4.1	37	80	16	130	43	20	23	12	1.86
88466--88603	52	2.6	52	88	2	195	42	21	23	12	1.87
88599--88643	19	2.4	19	92	0	72	8	15	26	48	1.74
89198--89306	20	5.4	20	81	4	121	22	20	19	38	1.93
89216--89306	41	2.2	40	86	1	119	20	20	17	40	1.91
89424--89474	21	2.4	22	74	6	61	35	15	27	21	1.94
93544--93583	20	2.0	20	95	0	71	42	20	7	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100500--100561	30	2.1	30	87	0	88	35	16	30	17	1.92
100638--100737	2	52.0	2	67	11	57	49	2	0	49	1.12
100637--100737	15	6.9	15	69	23	56	48	1	0	49	1.12
107642--107973	182	1.8	182	88	1	513	31	10	16	40	1.83
118715--118768	23	2.3	23	83	0	63	14	20	24	40	1.90
118700--118827	35	3.5	35	81	10	125	12	24	22	40	1.88
124074--124119	25	2.0	24	83	12	60	56	0	0	43	0.99
125586--125661	3	25.7	3	94	2	136	64	1	0	34	1.02
125914--126801	113	7.8	114	93	2	1436	31	19	11	37	1.88
127530--127936	84	4.9	84	95	1	678	37	20	14	28	1.92
129015--129102	12	7.2	12	79	17	94	2	18	0	79	0.83
129016--129098	6	13.7	6	72	20	66	2	16	0	80	0.81
129015--129097	5	16.0	5	76	18	64	2	18	0	79	0.84
129015--129102	32	2.9	30	86	8	124	2	18	0	79	0.83
139657--139693	15	2.7	15	88	12	53	62	8	5	24	1.44

Tables:   1

The End!