Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004166.1 Hibiscus syriacus cultivar Beakdansim tig00009108_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81777

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
342--531
102
1.9
102
89
0
299
21
17
23
37
1.93
1670--1728
9
6.3
9
75
14
57
0
11
5
83
0.81
1670--1727
17
3.2
16
81
15
53
0
12
5
82
0.82
1675--1731
19
3.1
18
82
7
69
0
14
3
82
0.80
1655--1734
28
2.8
27
85
11
90
1
16
3
78
0.95
8518--9542
511
2.0
516
95
2
1846
28
19
17
34
1.95
12755--12820
29
2.3
28
80
12
71
68
1
7
22
1.24
12828--12870
2
21.5
2
95
0
77
53
0
0
46
1.00
12926--13030
13
8.2
13
72
19
55
62
1
1
33
1.17
12943--13031
9
8.9
10
70
19
53
65
2
1
31
1.12
15228--15278
24
2.1
24
82
13
61
64
1
3
29
1.22
17852--17914
22
3.0
20
77
11
72
28
15
30
25
1.96
17783--17955
95
1.8
96
89
2
278
31
16
24
27
1.97
17768--17972
95
2.2
96
85
6
276
31
16
24
27
1.96
17786--18007
95
2.3
95
83
3
241
31
15
24
27
1.96
18260--18426
59
2.9
58
83
3
192
32
12
20
34
1.90
18802--19127
68
4.9
68
85
7
445
32
12
23
31
1.92
18810--19127
128
2.4
130
87
5
444
33
12
22
32
1.91
19260--19293
2
17.0
2
100
0
68
50
0
0
50
1.00
26109--26165
23
2.5
23
97
2
107
35
14
14
36
1.86
27727--27812
41
2.1
41
86
4
120
32
39
4
23
1.75
28677--28720
2
22.0
2
100
0
88
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34478--34673
3
66.7
3
70
13
131
56
4
4
35
1.37
34481--34672
25
7.9
25
70
20
106
55
4
4
35
1.38
37278--37325
24
2.0
24
84
12
62
31
14
0
54
1.41
37294--37363
24
2.8
25
75
8
72
30
8
0
61
1.26
37648--37685
19
2.0
19
85
10
51
63
2
5
28
1.30
39187--39274
45
1.9
46
88
2
133
29
25
18
27
1.98
47488--47553
26
2.5
26
100
0
132
24
24
22
28
1.99
48536--48569
15
2.3
15
89
0
50
35
2
2
58
1.28
49234--49292
2
29.5
2
100
0
118
49
0
0
50
1.00
52029--52057
14
2.1
14
100
0
58
34
17
13
34
1.89
55431--55465
16
2.2
16
90
10
54
60
0
0
40
0.97
55527--55749
120
1.9
119
82
6
283
37
8
8
45
1.66
57534--57591
3
19.0
3
85
3
80
39
0
0
60
0.97
59082--59179
49
2.0
49
100
0
196
30
10
12
46
1.74
62574--62612
13
2.9
13
88
3
60
46
20
15
17
1.84
71468--71533
23
2.9
23
67
0
60
36
22
24
16
1.94
78741--78796
23
2.5
23
85
5
80
28
17
19
33
1.95
80707--80759
26
2.0
26
88
0
79
18
0
22
58
1.39
81061--81095
12
2.8
13
86
8
54
45
8
5
40
1.58

Tables:   1

The End!