genome.fa.s4167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004167.1 Hibiscus syriacus cultivar Beakdansim tig00009111_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  173377

Tables:   1   

This is table  1  of  1  ( 118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3013--3340	19	18.7	19	77	19	347	45	18	21	14	1.84
3060--3259	14	11.9	15	69	24	68	47	18	21	13	1.82
3013--3340	34	9.4	34	87	8	343	45	18	21	14	1.84
3013--3203	67	2.9	67	93	3	314	46	19	20	13	1.83
3336--3464	19	7.3	19	75	17	125	8	17	28	45	1.77
3041--3341	52	5.7	54	80	15	323	45	17	22	14	1.84
3336--3427	33	2.8	33	93	3	150	7	18	28	45	1.76
3508--3973	92	5.1	92	97	1	852	46	18	12	22	1.83
5658--5780	14	7.7	14	72	24	93	43	22	25	8	1.82
5650--5797	33	4.5	33	96	0	278	45	20	24	9	1.81
5657--5802	19	8.8	18	71	24	108	43	21	24	9	1.82
5814--5868	14	3.6	14	73	21	56	9	25	23	41	1.83
5798--5868	33	2.2	33	94	0	124	8	22	25	43	1.81
5809--5890	33	2.5	33	89	2	119	9	25	21	42	1.84
5821--5909	20	4.8	20	72	19	75	12	24	19	43	1.85
5989--6058	33	2.1	33	91	0	113	47	17	22	12	1.81
6240--6294	22	2.5	22	81	0	74	20	16	40	23	1.91
6440--6633	20	9.6	20	81	6	212	19	19	25	35	1.95
6440--6633	61	3.2	60	81	5	237	19	19	25	35	1.95
6439--6633	81	2.4	81	83	3	241	18	19	25	35	1.95
10469--10585	37	3.5	32	82	12	135	38	35	11	15	1.83
11428--11461	17	2.1	17	88	5	52	32	2	23	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15843--16024	5	36.8	5	90	8	293	40	0	0	59	1.02
15845--16024	64	2.9	62	90	6	294	40	0	0	59	1.02
21402--21460	29	2.0	29	100	0	118	49	13	13	23	1.78
26060--26118	29	2.0	29	100	0	118	49	13	13	23	1.78
32001--32045	22	2.0	22	86	4	63	31	33	26	8	1.87
33404--33621	103	2.1	103	93	0	382	25	12	23	38	1.90
33640--33703	23	2.8	23	97	0	119	26	28	20	25	1.99
34603--34671	23	3.0	23	84	0	93	27	26	26	20	1.99
34692--34894	103	2.0	103	96	0	370	35	24	12	27	1.91
36271--36330	20	2.8	20	83	16	77	18	25	25	31	1.97
51694--51764	29	2.4	29	95	0	124	26	16	18	38	1.92
52450--52654	73	2.7	73	84	6	243	24	30	22	21	1.99
61044--61253	75	2.8	76	84	4	264	23	31	22	22	1.98
62501--62620	59	2.0	61	85	6	165	59	3	20	17	1.52
64736--64783	25	1.9	25	91	8	80	14	12	4	68	1.34
66024--66075	24	2.2	24	92	0	86	26	23	13	36	1.92
66544--66842	41	7.2	41	91	3	449	22	21	24	31	1.98
66544--66837	123	2.4	125	93	1	511	22	21	24	31	1.98
67603--67646	6	7.3	6	100	0	88	0	15	50	34	1.45
67727--67887	41	3.9	41	95	0	286	31	24	22	21	1.99
69587--69639	21	2.5	21	93	0	88	16	20	35	26	1.94
70176--70220	2	22.5	2	100	0	90	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80119--80146	2	14.0	2	100	0	56	50	0	0	50	1.00
80256--80496	4	60.2	4	98	0	455	24	0	25	50	1.50
87954--88028	21	3.6	21	92	0	123	29	25	22	22	1.99
88157--88195	3	13.0	3	100	0	78	33	66	0	0	0.92
88823--88886	21	3.0	21	88	4	65	32	20	23	23	1.98
88840--88947	21	5.2	21	79	8	123	30	22	23	24	1.99
88849--88988	62	2.3	62	86	7	196	29	22	21	27	1.99
88894--88993	21	4.8	21	75	16	91	27	23	21	29	1.99
88956--89147	21	8.9	20	74	17	109	22	21	25	30	1.99
88956--89081	50	2.7	50	81	13	162	21	23	26	29	1.99
89002--89154	42	3.7	42	80	8	195	23	20	25	30	1.99
89002--89154	21	7.3	21	81	7	177	23	20	25	30	1.99
95124--95179	26	2.2	26	93	0	94	25	12	8	53	1.67
96220--96308	20	4.4	20	81	8	117	29	29	17	23	1.97
97129--97182	24	2.2	24	93	0	90	20	18	20	40	1.91
99425--99459	18	1.9	18	94	0	61	54	22	2	20	1.58
99630--99780	20	7.8	20	77	8	116	33	19	19	27	1.96
99630--99780	40	3.9	40	76	10	152	33	19	19	27	1.96
99630--99830	94	2.1	94	84	6	257	34	20	19	25	1.96
99786--99830	20	2.3	19	84	3	54	31	24	20	24	1.98
99976--100009	14	2.4	14	95	0	59	52	11	0	35	1.38
101381--101450	21	3.3	21	68	4	52	24	18	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101437--101497	21	2.9	21	82	0	68	26	16	36	21	1.94
101932--101975	20	2.2	20	91	0	70	50	20	13	15	1.78
101966--102009	20	2.2	20	91	0	70	40	27	18	13	1.88
102054--102182	20	6.8	19	76	13	79	17	19	20	43	1.88
102085--102176	40	2.3	39	79	1	103	18	19	20	41	1.91
104079--104133	20	2.8	20	85	0	74	38	25	16	20	1.92
104707--104813	41	2.6	41	92	0	178	25	18	22	33	1.97
104778--104882	20	5.2	20	68	15	63	27	20	22	29	1.98
104707--104844	41	3.4	41	87	2	152	26	18	22	33	1.96
111417--111513	42	2.3	42	92	0	158	28	19	17	34	1.95
115358--115463	42	2.5	42	78	18	105	33	5	0	60	1.27
115362--115469	47	2.2	48	82	12	132	34	6	0	58	1.30
115382--115451	10	6.8	10	70	15	54	30	4	1	64	1.21
119816--119872	21	2.8	21	76	10	55	64	3	15	15	1.42
126409--126513	55	1.9	55	86	3	149	53	13	20	13	1.72
126497--126530	18	1.9	17	88	5	50	82	0	17	0	0.67
127050--127077	1	28.0	1	100	0	56	100	0	0	0	0.00
127295--128174	105	8.4	105	97	0	1643	32	24	18	23	1.97
129565--129672	49	2.2	49	82	9	123	34	6	0	58	1.30
129622--129656	10	3.4	10	88	4	52	28	0	2	68	1.04
129915--129955	14	3.0	13	80	13	55	21	0	2	75	0.92
132004--132125	49	2.4	52	86	6	171	19	22	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133508--133578	31	2.2	32	83	11	85	32	8	11	47	1.69
155234--155276	17	2.7	15	80	16	50	74	6	2	16	1.14
155234--155276	16	2.6	16	86	13	61	74	6	2	16	1.14
156611--157003	44	8.9	44	66	6	204	27	18	21	32	1.96
156611--157213	88	7.0	85	73	9	427	28	18	20	32	1.96
156667--157049	176	2.2	176	85	1	527	27	18	21	33	1.96
157570--157655	36	2.5	34	83	7	109	39	17	18	24	1.92
157584--157679	36	2.7	36	88	0	129	40	17	18	22	1.91
157692--157771	37	2.2	35	82	6	88	35	11	18	35	1.87
158134--158226	42	2.2	41	84	5	123	31	23	17	27	1.97
158221--158602	43	9.0	43	95	0	583	26	31	14	28	1.95
158507--158573	22	3.1	22	60	4	55	26	32	13	26	1.94
160708--160782	23	3.3	22	68	15	62	38	8	21	32	1.82
160682--160794	46	2.5	46	91	4	178	40	6	19	33	1.76
160943--161035	38	2.5	37	91	5	145	24	22	27	24	2.00
162824--162916	12	8.0	11	71	11	69	3	17	0	79	0.86
162820--162916	44	2.4	37	79	18	113	3	17	0	79	0.86
162824--162917	7	13.7	7	71	17	56	3	18	0	78	0.88
162829--162916	40	2.1	41	89	8	133	3	17	0	79	0.86
162819--162917	17	5.7	18	73	10	80	4	18	0	77	0.92
162867--162926	19	3.1	19	79	9	66	6	15	0	78	0.95
162893--162934	19	2.2	19	86	0	57	9	11	2	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166659--166703	17	2.8	16	84	15	58	75	6	2	15	1.11
166660--166708	16	3.1	15	83	13	55	75	6	2	16	1.09
166684--166724	21	2.0	21	85	9	57	70	7	0	21	1.11
167200--167229	8	3.6	8	95	4	51	13	0	0	86	0.57
168623--168693	35	2.0	35	94	0	124	53	2	7	36	1.43
172163--172191	14	2.1	14	100	0	58	6	41	13	37	1.72
172647--172680	12	2.7	13	90	4	52	38	17	23	20	1.93
172647--172683	13	3.0	12	88	7	56	35	21	24	18	1.96

Tables:   1

The End!