Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004170.1 Hibiscus syriacus cultivar Beakdansim tig00009125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 116930
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Found at i:1988 original size:23 final size:23
Alignment explanation
Indices: 1958--2035 Score: 120
Period size: 23 Copynumber: 3.4 Consensus size: 23
1948 CAACTACTTC
*
1958 CAAAGCCACGCGTACGGCTCACT
1 CAAAGCCACGCGTATGGCTCACT
*
1981 CAAAGCCACACGTATGGCTCACT
1 CAAAGCCACGCGTATGGCTCACT
* *
2004 CAAAACCACGTGTATGGCTCACT
1 CAAAGCCACGCGTATGGCTCACT
2027 CAAAGCCAC
1 CAAAGCCAC
2036 CAGTGTGGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.31, C:0.36, G:0.18, T:0.15
Consensus pattern (23 bp):
CAAAGCCACGCGTATGGCTCACT
Found at i:3897 original size:12 final size:11
Alignment explanation
Indices: 3879--3921 Score: 56
Period size: 12 Copynumber: 4.1 Consensus size: 11
3869 GACGTTTTAC
3879 TATATATATTA
1 TATATATATTA
3890 TCATATATATTA
1 T-ATATATATTA
3902 TATA-ATATTA
1 TATATATATTA
3912 T-TAT-TATTA
1 TATATATATTA
3921 T
1 T
3922 TCATAAAGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.27
10 7 0.23
11 4 0.13
12 11 0.37
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (11 bp):
TATATATATTA
Found at i:3919 original size:19 final size:20
Alignment explanation
Indices: 3879--3921 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
3869 GACGTTTTAC
3879 TATATATATTATCATATATAT
1 TATATATATTAT-ATATATAT
3900 TATATAATATTAT-TAT-TAT
1 TATAT-ATATTATATATATAT
3919 TAT
1 TAT
3922 TCATAAAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 6 0.29
20 3 0.14
21 5 0.24
22 7 0.33
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TATATATATTATATATATAT
Found at i:6488 original size:16 final size:16
Alignment explanation
Indices: 6467--6506 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
6457 GATTGGTACC
6467 AAAAGCATTTTATGGT
1 AAAAGCATTTTATGGT
6483 AAAAGCATTTTATGGT
1 AAAAGCATTTTATGGT
*
6499 AAGAGCAT
1 AAAAGCAT
6507 CAATTGAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (16 bp):
AAAAGCATTTTATGGT
Found at i:8573 original size:13 final size:13
Alignment explanation
Indices: 8556--8585 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
8546 TGGATGAAAC
8556 AAAAAGAAGAAAGG
1 AAAAAGAA-AAAGG
8570 AAAAAGAAAAAGG
1 AAAAAGAAAAAGG
8583 AAA
1 AAA
8586 GGTAATTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAGG
Found at i:12257 original size:6 final size:6
Alignment explanation
Indices: 12246--12324 Score: 59
Period size: 6 Copynumber: 13.2 Consensus size: 6
12236 AGAGTAGTGA
* * * * * *
12246 AGCAAG AGCAAG AACAAG AGCAAT AACAAG AGAAAG AACAAG AGCAAA
1 AGCAAG AGCAAG AGCAAG AGCAAG AGCAAG AGCAAG AGCAAG AGCAAG
* * * * *
12294 AGCAAT AACAAG TGTAAA AGCAAG AGCAAG A
1 AGCAAG AGCAAG AGCAAG AGCAAG AGCAAG A
12325 TAAAAATTCG
Statistics
Matches: 52, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.58, C:0.14, G:0.23, T:0.05
Consensus pattern (6 bp):
AGCAAG
Found at i:12265 original size:12 final size:12
Alignment explanation
Indices: 12248--12292 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
12238 AGTAGTGAAG
12248 CAAGAGCAAGAA
1 CAAGAGCAAGAA
*
12260 CAAGAGCAATAA
1 CAAGAGCAAGAA
*
12272 CAAGAGAAAGAA
1 CAAGAGCAAGAA
12284 CAAGAGCAA
1 CAAGAGCAA
12293 AAGCAATAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.60, C:0.16, G:0.22, T:0.02
Consensus pattern (12 bp):
CAAGAGCAAGAA
Found at i:12298 original size:30 final size:31
Alignment explanation
Indices: 12249--12322 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 31
12239 GTAGTGAAGC
* *
12249 AAGAGCAAGAACAAGAGCAATAACAAGAG-A
1 AAGAGCAAGAGCAAAAGCAATAACAAGAGTA
* *
12279 AAGAACAAGAGCAAAAGCAATAACAAGTGTA
1 AAGAGCAAGAGCAAAAGCAATAACAAGAGTA
12310 AA-AGCAAGAGCAA
1 AAGAGCAAGAGCAA
12323 GATAAAAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
30 35 0.92
31 3 0.08
ACGTcount: A:0.59, C:0.14, G:0.22, T:0.05
Consensus pattern (31 bp):
AAGAGCAAGAGCAAAAGCAATAACAAGAGTA
Found at i:14034 original size:15 final size:15
Alignment explanation
Indices: 13987--14042 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
13977 AATTAGGTTA
13987 ATTAATT-TTATTATT
1 ATTAATTATTA-TATT
* *
14002 -TTATTTATT-TAATC
1 ATTAATTATTAT-ATT
14016 ATTAATTATTATATT
1 ATTAATTATTATATT
14031 ATTAATTATTAT
1 ATTAATTATTAT
14043 TAGTATTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
13 1 0.03
14 7 0.21
15 24 0.73
16 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTAATTATTATATT
Found at i:15625 original size:17 final size:17
Alignment explanation
Indices: 15603--15647 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
15593 TTTACTTTTG
15603 CATCCTCATGACATCTA
1 CATCCTCATGACATCTA
15620 CATCCTCATGACATCTA
1 CATCCTCATGACATCTA
* *
15637 TATCATCATGA
1 CATCCTCATGA
15648 TATAAAGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.31
Consensus pattern (17 bp):
CATCCTCATGACATCTA
Found at i:21134 original size:131 final size:130
Alignment explanation
Indices: 20886--21214 Score: 360
Period size: 131 Copynumber: 2.5 Consensus size: 130
20876 ATTTGATTTG
* * * *
20886 CATGTCTGATCTTCCCTAAAGAGTAGCGAAGCATATCTCCTTTTCCAGATTCGATCTTCACTAAA
1 CATGTCTGATCTTCCCTAAAGAGTAGTGAAGCATATCT-CTTTTCTAGATTTGATCTTCACTGAA
* * ** **
20951 GAGTAGTGAAGCAAATCAACCTCGATTATATCTTCCTTAAAGATTAGTGAAGTGAATCAAAGTTT
65 GAGTAATGAAGCAAATCAACCTCAATTATATCTTCCTTAAAGAGCAAAGAAGTGAATCAAAGTTT
21016 A
130 A
* * * * * *
21017 CATGTCTAATCTTCACTAAAGAGTAATGAAGTATATTCTTTTTTCTAGATTTGATCTTCCCTGAA
1 CATGTCTGATCTTCCCTAAAGAGTAGTGAAGCATA-TCTCTTTTCTAGATTTGATCTTCACTGAA
*
21082 GAGTAATGAAGCAAATCAACACT-AATTCA-ATCTTTCC-TAAGGAGCAAAGAAGTGAATCAAAG
65 GAGTAATGAAGCAAATCAAC-CTCAATT-ATATC-TTCCTTAAAGAGCAAAGAAGTGAATCAAAG
*
21144 TTTT
127 TTTA
* * * * * *
21148 CA-GATATGATCTTCCCTAAAGAGTAGTGAAGCAGATCCCATTTCTAGATTTGATTTTCTCTGAA
1 CATG-TCTGATCTTCCCTAAAGAGTAGTGAAGCATATCTCTTTTCTAGATTTGATCTTCACTGAA
21212 GAG
65 GAG
21215 CAGTGGATCA
Statistics
Matches: 164, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
130 28 0.17
131 126 0.77
132 10 0.06
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (130 bp):
CATGTCTGATCTTCCCTAAAGAGTAGTGAAGCATATCTCTTTTCTAGATTTGATCTTCACTGAAG
AGTAATGAAGCAAATCAACCTCAATTATATCTTCCTTAAAGAGCAAAGAAGTGAATCAAAGTTTA
Found at i:21850 original size:32 final size:30
Alignment explanation
Indices: 21775--21851 Score: 75
Period size: 32 Copynumber: 2.5 Consensus size: 30
21765 TAAAGTATAC
* *
21775 TATATATATAGTATTTTTTAGTTTTAAAAAA
1 TATATATATA-TATTATATAGTTTTAAAAAA
* *
21806 AATAGTAGTATATATTATATAGTTTT-TAAAA
1 TATA-TA-TATATATTATATAGTTTTAAAAAA
21837 TAGTATATATATATT
1 TA-TATATATATATT
21852 TTTGAAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
30 8 0.21
31 10 0.26
32 16 0.42
33 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (30 bp):
TATATATATATATTATATAGTTTTAAAAAA
Found at i:21854 original size:23 final size:25
Alignment explanation
Indices: 21811--21891 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 25
21801 AAAAAAATAG
*
21811 TAGTATATATTATATAGTTTTTAAAA
1 TAGTATATATTATATA-TTTTGAAAA
21837 TAGTATATA-TATAT-TTTTGAAAAA
1 TAGTATATATTATATATTTTG-AAAA
* *
21861 TAAATATATTATTTATATAATTTGGAAAA
1 T-AGTATA-TA-TTATAT-ATTTTGAAAA
21890 TA
1 TA
21892 AATATTAGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
23 4 0.09
24 5 0.11
25 10 0.22
26 11 0.24
28 6 0.13
29 5 0.11
30 4 0.09
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.47
Consensus pattern (25 bp):
TAGTATATATTATATATTTTGAAAA
Found at i:21864 original size:29 final size:30
Alignment explanation
Indices: 21832--21912 Score: 94
Period size: 29 Copynumber: 2.7 Consensus size: 30
21822 ATATAGTTTT
*
21832 TAAA-ATAGTATATATATATTTTTGAAAAA
1 TAAATATAGTATTTATATATTTTTGAAAAA
* * *
21861 TAAATATATTATTTATATA-ATTTGGAAAA
1 TAAATATAGTATTTATATATTTTTGAAAAA
21890 TAAATATTAGTATGTTATATATT
1 TAAATA-TAGTAT-TTATATATT
21913 ATGTTTTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
29 18 0.43
30 17 0.40
31 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.46
Consensus pattern (30 bp):
TAAATATAGTATTTATATATTTTTGAAAAA
Found at i:21867 original size:21 final size:22
Alignment explanation
Indices: 21821--21874 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
21811 TAGTATATAT
*
21821 TATATAGTTTTTAAAATAGTATA
1 TATATA-TTTTTAAAATAGTAAA
21844 TATATATTTTTGAAAA-A-TAAA
1 TATATATTTTT-AAAATAGTAAA
21865 TATATTATTT
1 TATA-TATTT
21875 ATATAATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 7 0.25
22 11 0.39
23 10 0.36
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (22 bp):
TATATATTTTTAAAATAGTAAA
Found at i:23442 original size:216 final size:215
Alignment explanation
Indices: 22934--23635 Score: 1207
Period size: 215 Copynumber: 3.3 Consensus size: 215
22924 AAATTTAAGA
22934 ATTAAATTGAACAAATATGAAATTAAAAATTAAAAA-TTAAATAAATTAAACAACACACATTGAT
1 ATTAAATTGAACAAATATGAAATTAAAAA-TAAAAATTTAAATAAATTAAACAACACACATTGAT
* *
22998 GAGGGATAAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATTAT
65 GAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAAAAAAAGTACTAAATTAT
23063 ACCCATTTAAAAAGTTATGAGCCAATTAAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTTA
130 ACCCATTTAAAAAGTTATGAGCCAATTAAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTTA
*
23128 TATGCAAATAAAATTTGGAGG
195 GATGCAAATAAAATTTGGAGG
*
23149 ACTAAATTGAACAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAACAACACACATTGATG
1 ATTAAATTGAACAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAACAACACACATTGATG
23214 AGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAAAAAAAGTACTAAATTATA
66 AGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAAAAAAAGTACTAAATTATA
* * * *
23279 CCCATTTTAAAAA-TTATGAGCCAATTAAATAATATAAATAAGTAATAAGTATGGATCAATTTCA
131 CCCA-TTTAAAAAGTTATGAGCCAATTAAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTTA
23343 GATGCAAATAAAATTTGGAGG
195 GATGCAAATAAAATTTGGAGG
*
23364 ATTAAATTGAACAAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAGCAACACACATTGAT
1 ATTAAATTGAAC-AAATATGAAATTAAAAATAAAAATTTAAATAAATTAAACAACACACATTGAT
23429 GAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTA
65 GAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATA-AAAAAAGTACTAAATTA
* *
23494 TATCCATTTAAAAAGTTAT-AGGCCAATTAAAAAATAGAAACAAGTAATAAGTATGGGTCAATTT
129 TACCCATTTAAAAAGTTATGA-GCCAATTAAAAAATAGAAATAAGTAATAAGTATGGGTCAATTT
*
23558 TAGATGCAAATAAATTTTGGAGG
193 TAGATGCAAATAAAATTTGGAGG
*
23581 ATTAAATTGAAC-AA-ATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACA
1 ATTAAATTGAACAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAACAACACA
23636 AAGGGATCAA
Statistics
Matches: 462, Mismatches: 19, Indels: 13
0.94 0.04 0.03
Matches are distributed among these distances:
214 45 0.10
215 204 0.44
216 115 0.25
217 98 0.21
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (215 bp):
ATTAAATTGAACAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAACAACACACATTGATG
AGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAAAAAAAGTACTAAATTATA
CCCATTTAAAAAGTTATGAGCCAATTAAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTTAG
ATGCAAATAAAATTTGGAGG
Found at i:23779 original size:2 final size:2
Alignment explanation
Indices: 23717--23760 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
23707 AAAACAACTA
23717 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23759 AT
1 AT
23761 GTTATGTATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23863 original size:11 final size:11
Alignment explanation
Indices: 23849--23886 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
23839 ACTACATAGT
23849 TTATATATAAA
1 TTATATATAAA
*
23860 TTATATATGAA
1 TTATATATAAA
23871 TTATATATAAA
1 TTATATATAAA
*
23882 CTATA
1 TTATA
23887 CAATTTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (11 bp):
TTATATATAAA
Found at i:23955 original size:22 final size:22
Alignment explanation
Indices: 23930--23992 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
23920 TAATATATTG
23930 TATAAATTATATAGTTTAT-TAA
1 TATAAATTATATAGTTTATAT-A
*
23952 TATAAACTATATAGTTTATATA
1 TATAAATTATATAGTTTATATA
* *
23974 TATATATATATATGGTTTA
1 TATAAAT-TATATAGTTTA
23993 AGGTTTAGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 24 0.69
23 11 0.31
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (22 bp):
TATAAATTATATAGTTTATATA
Found at i:24157 original size:13 final size:13
Alignment explanation
Indices: 24134--24170 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
24124 TATAGTTTAC
*
24134 ATATGAACTATAT
1 ATATAAACTATAT
*
24147 GTATAAACTATAT
1 ATATAAACTATAT
24160 ATATAAACTAT
1 ATATAAACTAT
24171 GTAAACTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (13 bp):
ATATAAACTATAT
Found at i:24223 original size:24 final size:24
Alignment explanation
Indices: 24117--24226 Score: 69
Period size: 24 Copynumber: 4.2 Consensus size: 24
24107 GTAAACTATA
24117 TATATTATATAGTTTACATATGAAC
1 TATA-TATATAGTTTACATATGAAC
* * * * *
24142 TATATGTATAAACTATATATATAAAC
1 TATA--TATATAGTTTACATATGAAC
*
24168 TATGTAAACTATATAGTTTACATATGACC
1 TA--T--A-TATATAGTTTACATATGAAC
*
24197 TATATATATAGTTTA-TTAGTGAAC
1 TATATATATAGTTTACATA-TGAAC
24221 TATATA
1 TATATA
24227 AACTATTTAT
Statistics
Matches: 64, Mismatches: 15, Indels: 13
0.70 0.16 0.14
Matches are distributed among these distances:
23 2 0.03
24 21 0.33
25 5 0.08
26 17 0.27
27 1 0.02
28 1 0.02
29 16 0.25
30 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (24 bp):
TATATATATAGTTTACATATGAAC
Found at i:24269 original size:18 final size:17
Alignment explanation
Indices: 24221--24269 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
24211 ATTAGTGAAC
*
24221 TATATAAACTATTTATA
1 TATATAAACTATATATA
*
24238 TAGTATATACTATATATAA
1 TA-TATAAACTATATAT-A
*
24257 TATATAAATTATA
1 TATATAAACTATA
24270 GTTTATATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 2 0.08
18 21 0.81
19 3 0.12
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (17 bp):
TATATAAACTATATATA
Found at i:24296 original size:27 final size:28
Alignment explanation
Indices: 24266--24342 Score: 102
Period size: 31 Copynumber: 2.7 Consensus size: 28
24256 ATATATAAAT
24266 TATAGTTTATATTTATATAC-TACATAC
1 TATAGTTTATATTTATATACATACATAC
*
24293 TATAGTTTATATTTATATACTATATATATAC
1 TATAGTTTATATTTATATAC---ATACATAC
*
24324 TATAGTTGATATTTATATA
1 TATAGTTTATATTTATATA
24343 TGAACTATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.45
31 24 0.55
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (28 bp):
TATAGTTTATATTTATATACATACATAC
Found at i:24355 original size:18 final size:18
Alignment explanation
Indices: 24334--24535 Score: 106
Period size: 18 Copynumber: 11.4 Consensus size: 18
24324 TATAGTTGAT
24334 ATTTATATATGAACTATA
1 ATTTATATATGAACTATA
* *
24352 ATTTACATATAAACTATA
1 ATTTATATATGAACTATA
24370 TAGTTTATATACT-AACTAT-
1 -A-TTTATATA-TGAACTATA
*
24389 AGTT-TATATG----AT-
1 ATTTATATATGAACTATA
*
24401 ATTTACATATGAACTATA
1 ATTTATATATGAACTATA
* *
24419 GTTTACATATGAACTATA
1 ATTTATATATGAACTATA
*
24437 TATTTACTATA-G--TTGAT-
1 -ATTTA-TATATGAACT-ATA
24454 ATTTATATATGAACTATA
1 ATTTATATATGAACTATA
* * *
24472 GTTTACATATAAACTATA
1 ATTTATATATGAACTATA
24490 TAGTTTATATACT-AACTATA
1 -A-TTTATATA-TGAACTATA
* * *
24510 GTTTACATATAAACTATA
1 ATTTATATATGAACTATA
*
24528 GTTTATAT
1 ATTTATAT
24536 TTACATATGA
Statistics
Matches: 144, Mismatches: 19, Indels: 42
0.70 0.09 0.20
Matches are distributed among these distances:
12 5 0.03
13 5 0.03
15 5 0.03
16 10 0.07
17 8 0.06
18 73 0.51
19 6 0.04
20 30 0.21
21 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (18 bp):
ATTTATATATGAACTATA
Found at i:24371 original size:20 final size:20
Alignment explanation
Indices: 24348--24389 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
24338 ATATATGAAC
24348 TATAATTTACATA-TAAACTA
1 TATAATTTACATACT-AACTA
* *
24368 TATAGTTTATATACTAACTA
1 TATAATTTACATACTAACTA
24388 TA
1 TA
24390 GTTTATATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (20 bp):
TATAATTTACATACTAACTA
Found at i:24465 original size:53 final size:53
Alignment explanation
Indices: 24397--24532 Score: 177
Period size: 53 Copynumber: 2.5 Consensus size: 53
24387 ATAGTTTATA
*
24397 TGATATTTACATATGAACTATAGTTTACATATGAACTATATA-TTTACTATAGT
1 TGATATTTACATATGAACTATAGTTTACATATAAACTATATAGTTTA-TATAGT
* *
24450 TGATATTTATATATGAACTATAGTTTACATATAAACTATATAGTTTATATACT
1 TGATATTTACATATGAACTATAGTTTACATATAAACTATATAGTTTATATAGT
*
24503 AACT-ATAGTTTACATATAAACTATAGTTTA
1 ---TGATA-TTTACATATGAACTATAGTTTA
24533 TATTTACATA
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
53 45 0.62
54 4 0.05
55 3 0.04
56 21 0.29
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43
Consensus pattern (53 bp):
TGATATTTACATATGAACTATAGTTTACATATAAACTATATAGTTTATATAGT
Found at i:24507 original size:38 final size:36
Alignment explanation
Indices: 24402--24535 Score: 150
Period size: 38 Copynumber: 3.7 Consensus size: 36
24392 TTATATGATA
* * *
24402 TTTACATATGAACTATAGTTTACATATGAACTATATA
1 TTTACATATAAACTATAGTTTATATATGAACTATA-G
**
24439 TTTAC-TAT-AGTTGATA-TTTATATATGAACTATAG
1 TTTACATATAAACT-ATAGTTTATATATGAACTATAG
24473 TTTACATATAAACTATATAGTTTATATACT-AACTATAG
1 TTTACATATAAAC--TATAGTTTATATA-TGAACTATAG
24511 TTTACATATAAACTATAGTTTATAT
1 TTTACATATAAACTATAGTTTATAT
24536 TTACATATGA
Statistics
Matches: 84, Mismatches: 6, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
34 5 0.06
35 21 0.25
36 19 0.23
37 8 0.10
38 30 0.36
39 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (36 bp):
TTTACATATAAACTATAGTTTATATATGAACTATAG
Found at i:24574 original size:57 final size:59
Alignment explanation
Indices: 24468--24659 Score: 160
Period size: 57 Copynumber: 3.2 Consensus size: 59
24458 ATATATGAAC
* *
24468 TATAGTTTACATATAAACTATATAGTTTATATACTAACTATAGTTTACATATAAACTATAGTT
1 TATAGTTTACATATGAACTATATA--TTATAAACT-A-TATAGTTTACATATAAACTATAGTT
* * *
24531 TATA-TTTACATATGAACTATATA-TATAAACTATATAGTTTACATATGACCTATA-TA
1 TATAGTTTACATATGAACTATATATTATAAACTATATAGTTTACATATAAACTATAGTT
* * * * *
24587 TATAGTTTA-TTAGTGAACTATATAAACTATTTATATAGTATATACTATACATATAAACTATAGT
1 TATAGTTTACATA-TGAAC--TAT--A-TA-TTATAAACTATATAGTTTACATATAAACTATAGT
24651 T
59 T
24652 TATA-TTTA
1 TATAGTTTA
24660 TATACTACAT
Statistics
Matches: 106, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
56 7 0.07
57 29 0.27
58 1 0.01
59 10 0.09
61 1 0.01
62 20 0.19
63 4 0.04
64 29 0.27
65 5 0.05
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.43
Consensus pattern (59 bp):
TATAGTTTACATATGAACTATATATTATAAACTATATAGTTTACATATAAACTATAGTT
Found at i:24583 original size:20 final size:20
Alignment explanation
Indices: 24402--24586 Score: 113
Period size: 18 Copynumber: 9.9 Consensus size: 20
24392 TTATATGATA
24402 TTTACATATGAAC--TATAG
1 TTTACATATGAACTATATAG
24420 TTTACATATGAACTATATA-
1 TTTACATATGAACTATATAG
*
24439 TTTAC-TAT--AGT-TGATA-
1 TTTACATATGAACTAT-ATAG
*
24455 TTTATATATGAAC--TATAG
1 TTTACATATGAACTATATAG
*
24473 TTTACATATAAACTATATAG
1 TTTACATATGAACTATATAG
*
24493 TTTATATACT-AAC--TATAG
1 TTTACATA-TGAACTATATAG
* *
24511 TTTACATATAAACTATAGTTTATA
1 TTTACATATGAACTATA---TA-G
24535 TTTACATATGAACTATATA-
1 TTTACATATGAACTATATAG
24554 --T--ATA--AACTATATAG
1 TTTACATATGAACTATATAG
*
24568 TTTACATATGACCTATATA
1 TTTACATATGAACTATATA
24587 TATAGTTTAT
Statistics
Matches: 133, Mismatches: 10, Indels: 46
0.70 0.05 0.24
Matches are distributed among these distances:
13 9 0.07
15 4 0.03
16 10 0.08
17 8 0.06
18 46 0.35
19 6 0.05
20 29 0.22
21 3 0.02
23 2 0.02
24 16 0.12
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.43
Consensus pattern (20 bp):
TTTACATATGAACTATATAG
Found at i:24607 original size:24 final size:24
Alignment explanation
Indices: 24561--24610 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
24551 ATATATAAAC
*
24561 TATATAGTTTACATATGACCTATA
1 TATATAGTTTACATATGAACTATA
*
24585 TATATAGTTTA-TTAGTGAACTATA
1 TATATAGTTTACATA-TGAACTATA
24609 TA
1 TA
24611 AACTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (24 bp):
TATATAGTTTACATATGAACTATA
Found at i:24677 original size:27 final size:27
Alignment explanation
Indices: 24644--24747 Score: 190
Period size: 27 Copynumber: 3.9 Consensus size: 27
24634 TACATATAAA
24644 CTATAGTTTATATTTATATACTACATG
1 CTATAGTTTATATTTATATACTACATG
* *
24671 ATGTAGTTTATATTTATATACTACATG
1 CTATAGTTTATATTTATATACTACATG
24698 CTATAGTTTATATTTATATACTACATG
1 CTATAGTTTATATTTATATACTACATG
24725 CTATAGTTTATATTTATATACTA
1 CTATAGTTTATATTTATATACTA
24748 TATATCATAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.49
Consensus pattern (27 bp):
CTATAGTTTATATTTATATACTACATG
Found at i:24865 original size:21 final size:20
Alignment explanation
Indices: 24841--24896 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 20
24831 TAGTTGATAT
24841 TTATATACTATATAATATAA
1 TTATATACTATATAATATAA
24861 TT-TATACTATAGTAAATATAAA
1 TTATATACTATA-T-AATAT-AA
* *
24883 CTATATATTATATA
1 TTATATACTATATA
24897 GTTCATTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 9 0.30
20 3 0.10
21 6 0.20
22 4 0.13
23 8 0.27
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (20 bp):
TTATATACTATATAATATAA
Found at i:24907 original size:33 final size:33
Alignment explanation
Indices: 24870--25153 Score: 234
Period size: 33 Copynumber: 8.7 Consensus size: 33
24860 ATTTATACTA
*
24870 TAGTAAATATAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* *
24903 TAGTATATATAAACTATATGGTATATATAAACTATACAT
1 TAGTATATATAAACTATA---TAT-TATATAGT-T-CAT
** * **
24942 TA-TATATAGTTCATTAGTATA-TATA-AACT-AT
1 TAGTATATA-TAAACTA-TATATTATATAGTTCAT
* *
24973 ATAGTAAATGTAAACTATATATTATATAGTTCAT
1 -TAGTATATATAAACTATATATTATATAGTTCAT
* *
25007 TAGTATATAT-AACATATATAGTATATAGTGCAT
1 TAGTATATATAAAC-TATATATTATATAGTTCAT
* *
25040 TAGTATATATAACCTATATAGTATAT-G-----
1 TAGTATATATAAACTATATATTATATAGTTCAT
25067 --GTATATATAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* *
25098 TAGTATATATAAACTATATATTAAAAAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
*
25131 TAGTATATATAACCTATATATTA
1 TAGTATATATAAACTATATATTA
25154 ATTTATTAAT
Statistics
Matches: 203, Mismatches: 25, Indels: 46
0.74 0.09 0.17
Matches are distributed among these distances:
25 22 0.11
26 1 0.00
31 6 0.03
32 14 0.07
33 122 0.60
34 5 0.02
35 4 0.02
36 3 0.01
37 8 0.04
38 7 0.03
39 9 0.04
40 2 0.01
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.42
Consensus pattern (33 bp):
TAGTATATATAAACTATATATTATATAGTTCAT
Found at i:24928 original size:18 final size:18
Alignment explanation
Indices: 24868--25065 Score: 120
Period size: 18 Copynumber: 11.6 Consensus size: 18
24858 TAATTTATAC
*
24868 TATAGTAAATATAAACTA
1 TATAGTATATATAAACTA
**
24886 TATA-T-TATAT-AGTTCA
1 TATAGTATATATAAACT-A
24902 T-TAGTATATATAAACTA
1 TATAGTATATATAAACTA
*
24919 TATGGTATATATAAACTA
1 TATAGTATATATAAACTA
* * **
24937 TACATTATATAT-AGTTCA
1 TATAGTATATATAAACT-A
24955 T-TAGTATATATAAACTA
1 TATAGTATATATAAACTA
* *
24972 TATAGTAAATGTAAACTA
1 TATAGTATATATAAACTA
**
24990 TATA-T-TATAT-AGTTCA
1 TATAGTATATATAAACT-A
25006 T-TAGTATATAT-AACATA
1 TATAGTATATATAAAC-TA
*
25023 TATAGTATATAGT--GC-A
1 TATAGTATATA-TAAACTA
*
25039 T-TAGTATATATAACCTA
1 TATAGTATATATAAACTA
25056 TATAGTATAT
1 TATAGTATAT
25066 GGTATATATA
Statistics
Matches: 137, Mismatches: 25, Indels: 36
0.69 0.13 0.18
Matches are distributed among these distances:
14 1 0.01
15 17 0.12
16 16 0.12
17 31 0.23
18 71 0.52
19 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (18 bp):
TATAGTATATATAAACTA
Found at i:24969 original size:53 final size:51
Alignment explanation
Indices: 24868--25033 Score: 253
Period size: 51 Copynumber: 3.2 Consensus size: 51
24858 TAATTTATAC
*
24868 TATAGTAAATATAAACTATATATTATATAGTTCATTAGTATATATAAACTA
1 TATAGTATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTA
* *
24919 TATGGTATATATAAACTATACATTATATATAGTTCATTAGTATATATAAACTA
1 TATAGTATATATAAACTATATA-T-TATATAGTTCATTAGTATATATAAACTA
* *
24972 TATAGTAAATGTAAACTATATATTATATAGTTCATTAGTATATAT-AACATA
1 TATAGTATATATAAACTATATATTATATAGTTCATTAGTATATATAAAC-TA
25023 TATAGTATATA
1 TATAGTATATA
25034 GTGCATTAGT
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
50 3 0.03
51 52 0.50
52 2 0.02
53 46 0.45
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (51 bp):
TATAGTATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTA
Found at i:25041 original size:84 final size:87
Alignment explanation
Indices: 24923--25150 Score: 295
Period size: 91 Copynumber: 2.6 Consensus size: 87
24913 AAACTATATG
* *
24923 GTATATATAAACTATACATTA-TATATAGTTCATTAGTATATATAAACTATATAG-TA-A-ATGT
1 GTATATATAAACTAT--A-TAGTATATAGTTCATTAGTATATATAACCTATATAGATAGATATAT
24984 AAACTATATATTATATAGTTCATTA
63 AAACTATATATTATATAGTTCATTA
*
25009 GTATATAT-AACATATATAGTATATAGTGCATTAGTATATATAACCTATATAGTATATGGTATAT
1 GTATATATAAAC-TATATAGTATATAGTTCATTAGTATATATAACCTATATAG-ATA--G-ATAT
25073 ATAAACTATATATTATATAGTTCATTA
61 ATAAACTATATATTATATAGTTCATTA
* * *
25100 GTATATATAAACTATATATTAAAAAGTTCATTAGTATATATAACCTATATA
1 GTATATATAAACTATATAGTATATAGTTCATTAGTATATATAACCTATATA
25151 TTAATTTATT
Statistics
Matches: 125, Mismatches: 7, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
83 2 0.02
84 32 0.26
85 3 0.02
86 13 0.10
90 1 0.01
91 71 0.57
92 3 0.02
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (87 bp):
GTATATATAAACTATATAGTATATAGTTCATTAGTATATATAACCTATATAGATAGATATATAAA
CTATATATTATATAGTTCATTA
Found at i:25076 original size:25 final size:25
Alignment explanation
Indices: 25042--25090 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
25032 TAGTGCATTA
*
25042 GTATATATAACCTATATAGTATATG
1 GTATATATAAACTATATAGTATATG
*
25067 GTATATATAAACTATATATTATAT
1 GTATATATAAACTATATAGTATAT
25091 AGTTCATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (25 bp):
GTATATATAAACTATATAGTATATG
Found at i:25838 original size:113 final size:113
Alignment explanation
Indices: 25702--25921 Score: 304
Period size: 113 Copynumber: 1.9 Consensus size: 113
25692 TCCATCCCAG
25702 TTCTTCCCCAAAACCCTCATTTGATCTTTAAAAACACCGAAACACAAA-CTATTTCATGTTTTTT
1 TTCTTCCCCAAAACCCTCATTTGATCTTTAAAAACACCGAAACACAAATC-ATTTCATG-TTTTT
* * * *
25766 TTCGATCAAACACTCA-AATATTCATTC-GTGTTCATCCTTGTTCATCCAA
64 TTCAATCAAACACCCACAA-ATTCATCCAGTGTTCATCCGTGTTCATCCAA
* * *
25815 TTCTTCCCTAAAACCCTTC-TTTGATCTTTAAAAACACCGAAACCCAAATCATTTCGTGTTTTTT
1 TTCTTCCCCAAAACCC-TCATTTGATCTTTAAAAACACCGAAACACAAATCATTTCATGTTTTTT
*
25879 TCAATCAAACACCCACAAATTCATCCATTGTTCATCCGTGTTC
65 TCAATCAAACACCCACAAATTCATCCAGTGTTCATCCGTGTTC
25922 TTTCCCAAAT
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
112 26 0.27
113 66 0.69
114 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (113 bp):
TTCTTCCCCAAAACCCTCATTTGATCTTTAAAAACACCGAAACACAAATCATTTCATGTTTTTTT
CAATCAAACACCCACAAATTCATCCAGTGTTCATCCGTGTTCATCCAA
Found at i:26096 original size:6 final size:6
Alignment explanation
Indices: 26061--26168 Score: 87
Period size: 6 Copynumber: 18.5 Consensus size: 6
26051 CTCGAACCTT
* * * * * **
26061 AACCCT AACCCT AACCCA AACTCG ATCCCA AACCCA AA-CTG AACCCA
1 AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA
* * *
26108 AACCC- AACCCA AACCCA AA-CAA AACCCA AACCCG AACCCA AACCTA
1 AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA
* *
26154 TACCCG AACCCA AAC
1 AACCCA AACCCA AAC
26169 TATTCGAAAC
Statistics
Matches: 78, Mismatches: 21, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
5 12 0.15
6 66 0.85
ACGTcount: A:0.44, C:0.45, G:0.04, T:0.06
Consensus pattern (6 bp):
AACCCA
Found at i:26107 original size:11 final size:11
Alignment explanation
Indices: 26091--26168 Score: 66
Period size: 11 Copynumber: 6.8 Consensus size: 11
26081 CTCGATCCCA
**
26091 AACCCAAACTG
1 AACCCAAACCC
26102 AACCCAAACCC
1 AACCCAAACCC
26113 AACCCAAACCC
1 AACCCAAACCC
* *
26124 AAACAAAACCC
1 AACCCAAACCC
*
26135 AAACCCGAACCC
1 -AACCCAAACCC
* *
26147 AAACCTATACCC
1 -AACCCAAACCC
26159 GAACCCAAAC
1 -AACCCAAAC
26169 TATTCGAAAC
Statistics
Matches: 53, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
11 29 0.55
12 24 0.45
ACGTcount: A:0.47, C:0.45, G:0.04, T:0.04
Consensus pattern (11 bp):
AACCCAAACCC
Found at i:26109 original size:17 final size:18
Alignment explanation
Indices: 26067--26169 Score: 79
Period size: 17 Copynumber: 5.9 Consensus size: 18
26057 CCTTAACCCT
*
26067 AACCCTAACCCAAACTCG
1 AACCCAAACCCAAACTCG
*
26085 ATCCCAAACCCAAACT-G
1 AACCCAAACCCAAACTCG
* *
26102 AACCCAAACCC-AACCCA
1 AACCCAAACCCAAACTCG
* * *
26119 AACCCAAA-CAAAACCCA
1 AACCCAAACCCAAACTCG
* *
26136 AACCCGAACCCAAAC-CT
1 AACCCAAACCCAAACTCG
*
26153 ATACCCGAACCCAAACT
1 A-ACCCAAACCCAAACT
26170 ATTCGAAACA
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
16 4 0.06
17 34 0.48
18 33 0.46
ACGTcount: A:0.45, C:0.45, G:0.04, T:0.07
Consensus pattern (18 bp):
AACCCAAACCCAAACTCG
Found at i:26394 original size:2 final size:2
Alignment explanation
Indices: 26387--26433 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
26377 TATATGCTTG
26387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26429 AT AT A
1 AT AT A
26434 CTGGTATAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:28846 original size:20 final size:20
Alignment explanation
Indices: 28823--28907 Score: 143
Period size: 20 Copynumber: 4.2 Consensus size: 20
28813 ATTCTGTTTT
28823 ATATTGTTTGCTTCTATTTG
1 ATATTGTTTGCTTCTATTTG
*
28843 ATATTGTTTGCTTCTGTTTG
1 ATATTGTTTGCTTCTATTTG
*
28863 ATATTGTTTGCTTCTGTTTG
1 ATATTGTTTGCTTCTATTTG
*
28883 ATATTGTTTGCTTCTACTTG
1 ATATTGTTTGCTTCTATTTG
28903 ATATT
1 ATATT
28908 TGTAAGGGTT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.14, C:0.11, G:0.16, T:0.59
Consensus pattern (20 bp):
ATATTGTTTGCTTCTATTTG
Found at i:28852 original size:10 final size:10
Alignment explanation
Indices: 28817--28892 Score: 59
Period size: 10 Copynumber: 7.6 Consensus size: 10
28807 TGCTTGATTC
*
28817 TGTTTTATAT
1 TGTTTGATAT
*
28827 TGTTTGCT-T
1 TGTTTGATAT
*
28836 CTATTTGATAT
1 -TGTTTGATAT
*
28847 TGTTTGCT-T
1 TGTTTGATAT
28856 CTGTTTGATAT
1 -TGTTTGATAT
*
28867 TGTTTGCT-T
1 TGTTTGATAT
28876 CTGTTTGATAT
1 -TGTTTGATAT
28887 TGTTTG
1 TGTTTG
28893 CTTCTACTTG
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
9 3 0.06
10 45 0.88
11 3 0.06
ACGTcount: A:0.12, C:0.08, G:0.18, T:0.62
Consensus pattern (10 bp):
TGTTTGATAT
Found at i:32951 original size:21 final size:21
Alignment explanation
Indices: 32927--32967 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32917 ATTATCCAAT
*
32927 AAACATGACATCCATAACAAC
1 AAACATGAAATCCATAACAAC
* *
32948 AAACTTTAAATCCATAACAA
1 AAACATGAAATCCATAACAA
32968 TCAACTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (21 bp):
AAACATGAAATCCATAACAAC
Found at i:32973 original size:21 final size:21
Alignment explanation
Indices: 32936--32983 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
32926 TAAACATGAC
32936 ATCCATAACAACAAACTTTAA
1 ATCCATAACAACAAACTTTAA
32957 ATCCATAACAATC-AACTTTAA
1 ATCCATAACAA-CAAACTTTAA
32978 ATCCAT
1 ATCCAT
32984 TATAATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (21 bp):
ATCCATAACAACAAACTTTAA
Found at i:36195 original size:95 final size:95
Alignment explanation
Indices: 36023--36213 Score: 301
Period size: 95 Copynumber: 2.0 Consensus size: 95
36013 TGCCGAAGAG
* *
36023 GTAGTATCAATACCATGGTAAGGGTATCGATACTAGTAAACATCAAATATAATTTCGGTATCAAT
1 GTAGTATCAATACCATGGTAAGGGTATCGATACCAGGAAACATCAAATATAATTTCGGTATCAAT
*
36088 ACTAGAAAGGGGTATCAATACCATAATATA
66 ACCAGAAAGGGGTATCAATACCATAATATA
* * *
36118 GTAGTATCAATACCATGGTAAGGGTATCGATACCAGGCAACATCGAATATAATTTCGGTATCGAT
1 GTAGTATCAATACCATGGTAAGGGTATCGATACCAGGAAACATCAAATATAATTTCGGTATCAAT
* * *
36183 ACCGGAAGGGGGTATCAGTACCATAATATA
66 ACCAGAAAGGGGTATCAATACCATAATATA
36213 G
1 G
36214 AATTATCGGT
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
95 87 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (95 bp):
GTAGTATCAATACCATGGTAAGGGTATCGATACCAGGAAACATCAAATATAATTTCGGTATCAAT
ACCAGAAAGGGGTATCAATACCATAATATA
Found at i:36677 original size:20 final size:20
Alignment explanation
Indices: 36652--36749 Score: 115
Period size: 20 Copynumber: 4.5 Consensus size: 20
36642 TGAAAATGCT
36652 TGAAAGGATGCATTAAGGCA
1 TGAAAGGATGCATTAAGGCA
*
36672 TGAAAGGATGCCAAAATTGAAAATGCA
1 TGAAAGGATG-C---ATT---AAGGCA
36699 TGAAAGGATGCATTAAGGCA
1 TGAAAGGATGCATTAAGGCA
*
36719 TGAAAGGATACATTAAGGCA
1 TGAAAGGATGCATTAAGGCA
36739 TGAAAGGATGC
1 TGAAAGGATGC
36750 CATATATATT
Statistics
Matches: 67, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
20 44 0.66
21 1 0.01
23 3 0.04
24 3 0.04
26 1 0.01
27 15 0.22
ACGTcount: A:0.43, C:0.10, G:0.28, T:0.19
Consensus pattern (20 bp):
TGAAAGGATGCATTAAGGCA
Found at i:43275 original size:95 final size:94
Alignment explanation
Indices: 43150--43339 Score: 238
Period size: 94 Copynumber: 2.0 Consensus size: 94
43140 TACCGAAGAG
* * * *
43150 GTAGTATCGATACCATAGTAAGGGTATCGATACTAGTAAACATCAAATATAATATT-GGTATCGA
1 GTAGTATCAATACCATAGTAAGGGTATCGATACCAGGAAACATC-AAGATAAT-TTCGGTATCGA
* *
43214 TACTAGAAAGGAGTATCAATACCATAGTATA
64 TACCAGAAAGGAGTATCAATACCATAATATA
* * *
43245 GTAGTATCAATACCATGGTAAGGGTATCGATACCAGGCAACATCAAGCTAATTTCGGTATCGATA
1 GTAGTATCAATACCATAGTAAGGGTATCGATACCAGGAAACATCAAGATAATTTCGGTATCGATA
* * * *
43310 CCGGAAGGGGGTATCAGTACCATAATATA
66 CCAGAAAGGAGTATCAATACCATAATATA
43339 G
1 G
43340 AATTATCGGT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
93 2 0.02
94 40 0.49
95 39 0.48
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.26
Consensus pattern (94 bp):
GTAGTATCAATACCATAGTAAGGGTATCGATACCAGGAAACATCAAGATAATTTCGGTATCGATA
CCAGAAAGGAGTATCAATACCATAATATA
Found at i:43836 original size:47 final size:47
Alignment explanation
Indices: 43761--44024 Score: 386
Period size: 47 Copynumber: 5.6 Consensus size: 47
43751 TAAATTGAAA
* * *
43761 CCATAGTTGAAAATGCATAAAAGGATGCATTAAGGCATGAAAGTATG
1 CCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
43808 ACATAATTGAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATG
1 CCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
43855 CCATAATTGAGAATGCATGAAAGAATGCATTAAGGCATGAAAGGATG
1 CCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
43902 CCACAATTTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
43949 CCATAATTGAAAATTCATGAAAGGATGCATTAAGGCATGAAAGGATT
1 CCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
43996 CCATATATATTAAAATGCAT-AAATGGATG
1 CCATA-AT-TGAAAATGCATGAAA-GGATG
44025 TGTTAATACG
Statistics
Matches: 195, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 176 0.90
48 5 0.03
49 14 0.07
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (47 bp):
CCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:43873 original size:27 final size:24
Alignment explanation
Indices: 43771--43976 Score: 102
Period size: 27 Copynumber: 8.8 Consensus size: 24
43761 CCATAGTTGA
*
43771 AAATGCATAAAAGGATG-C--ATT
1 AAATGCATGAAAGGATGCCAAATT
* * *
43792 -AAGGCATGAAAGTATGACATAATT
1 AAATGCATGAAAGGATGCCA-AATT
*
43816 GAAAATGCATGAAATGATG-C--ATT
1 --AAATGCATGAAAGGATGCCAAATT
*
43839 -AAGGCATGAAAGGATGCCATAATT
1 AAATGCATGAAAGGATGCCA-AATT
*
43863 GAGAATGCATGAAAGAATG-C--ATT
1 -A-AATGCATGAAAGGATGCCAAATT
*
43886 -AAGGCATGAAAGGATGCCACAATTT
1 AAATGCATGAAAGGATGCCA-AA-TT
43911 AAAATGCATGAAAGGATG-C--ATT
1 -AAATGCATGAAAGGATGCCAAATT
*
43933 -AAGGCATGAAAGGATGCCATAATT
1 AAATGCATGAAAGGATGCCA-AATT
*
43957 GAAAATTCATGAAAGGATGC
1 --AAATGCATGAAAGGATGC
43977 ATTAAGGCAT
Statistics
Matches: 141, Mismatches: 16, Indels: 50
0.68 0.08 0.24
Matches are distributed among these distances:
20 56 0.40
21 4 0.03
22 2 0.01
23 7 0.05
24 10 0.07
25 2 0.01
26 3 0.02
27 57 0.40
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (24 bp):
AAATGCATGAAAGGATGCCAAATT
Found at i:48435 original size:41 final size:41
Alignment explanation
Indices: 48378--48515 Score: 159
Period size: 41 Copynumber: 3.4 Consensus size: 41
48368 GATGTGTTTC
* * *
48378 CTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGCCA
1 CTAAAGTATGAGTCTATAGCAGCGTTTGTATAAAAACACCA
* *
48419 CTAAAGTATGAGTCTATAGCAGCGTTTTTATAAAAACACTA
1 CTAAAGTATGAGTCTATAGCAGCGTTTGTATAAAAACACCA
* * * * *
48460 CTAAAATATGAGTTTATAGCTGCATTTGTATACAAACACCA
1 CTAAAGTATGAGTCTATAGCAGCGTTTGTATAAAAACACCA
** *
48501 AGAATGTATGAGTCT
1 CTAAAGTATGAGTCT
48516 TTTGCTGTGT
Statistics
Matches: 80, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 80 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (41 bp):
CTAAAGTATGAGTCTATAGCAGCGTTTGTATAAAAACACCA
Found at i:48748 original size:41 final size:41
Alignment explanation
Indices: 48654--48819 Score: 128
Period size: 40 Copynumber: 4.1 Consensus size: 41
48644 ATTTGTGCTT
* * * *
48654 AAAAA-ACCACTAAAGAACTAGTATTT-GACGTCGTTTGTATC
1 AAAAACACCACTAAAGTACGAGTATTTAG-CGGCATTTGTA-C
* *
48695 --AAACGCCACTAAAGTACGAGTCTTTAGCGGCATTTGTAC
1 AAAAACACCACTAAAGTACGAGTATTTAGCGGCATTTGTAC
* * * *
48734 AAAAACACCACTAAAGTA-TAGTATTTAGTGGCATTTATAT
1 AAAAACACCACTAAAGTACGAGTATTTAGCGGCATTTGTAC
* * * * *
48774 AAAAA-AGCAACTAAAATACGAGTATTTACCGGCGTTTGTTC
1 AAAAACA-CCACTAAAGTACGAGTATTTAGCGGCATTTGTAC
48815 AAAAA
1 AAAAA
48820 AGTCACTAAA
Statistics
Matches: 98, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
39 5 0.05
40 57 0.58
41 36 0.37
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.28
Consensus pattern (41 bp):
AAAAACACCACTAAAGTACGAGTATTTAGCGGCATTTGTAC
Found at i:48794 original size:81 final size:78
Alignment explanation
Indices: 48701--48936 Score: 198
Period size: 81 Copynumber: 3.0 Consensus size: 78
48691 TATCAAACGC
*
48701 CACTAAAGTACGAGTCTTTAGCGGCATTTGTACAAAAACACCACTAAAGTATAGTATTTAGTGGC
1 CACTAAAATACGAGTCTTTAGCGGC-TTTGTACAAAAACACCACTAAAGTATAGTATTTAGTGGC
48766 ATTTATATAAAAAAG-
65 ATTTAT-T-AAAAAGT
* * * * ** *
48781 CAACTAAAATACGAGTATTTACCGGCGTTTGTTCAAAAA-AGTCACTAAAGTGCAATATTTAGCT
1 C-ACTAAAATACGAGTCTTTAGCGGC-TTTGTACAAAAACA-CCACTAAAGTATAGTATTTAG-T
* *
48845 GTG--TTTATTTAAACGT
62 G-GCATTTATTAAAAAGT
* * * *
48861 CACTAAAATACGAGTCTTTAGCGG--TTGTACAAAAACGCAACTAAAGTATGAGCATTTACTGGC
1 CACTAAAATACGAGTCTTTAGCGGCTTTGTACAAAAACACCACTAAAGTAT-AGTATTTAGTGGC
48924 GATTT-TTCAAAAA
65 -ATTTATT-AAAAA
48937 CACAGCTAAA
Statistics
Matches: 121, Mismatches: 24, Indels: 24
0.72 0.14 0.14
Matches are distributed among these distances:
75 1 0.01
76 20 0.17
77 8 0.07
78 6 0.05
79 25 0.21
80 4 0.03
81 54 0.45
82 2 0.02
83 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.30
Consensus pattern (78 bp):
CACTAAAATACGAGTCTTTAGCGGCTTTGTACAAAAACACCACTAAAGTATAGTATTTAGTGGCA
TTTATTAAAAAGT
Found at i:53160 original size:4 final size:4
Alignment explanation
Indices: 53139--53187 Score: 71
Period size: 4 Copynumber: 12.2 Consensus size: 4
53129 TTTATGATAT
* * *
53139 TCTA TCTA TATC TATA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
53187 T
1 T
53188 ATAAAAGTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51
Consensus pattern (4 bp):
TCTA
Found at i:54238 original size:18 final size:19
Alignment explanation
Indices: 54200--54238 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
54190 AGACCAAATC
*
54200 CAAGTGCATAACTTTGGGTT
1 CAAGTGCATAAC-TAGGGTT
54220 CAAGTGCATAA-TAGGGTT
1 CAAGTGCATAACTAGGGTT
54238 C
1 C
54239 CTTGATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (19 bp):
CAAGTGCATAACTAGGGTT
Found at i:57271 original size:2 final size:2
Alignment explanation
Indices: 57264--57313 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
57254 TGTAAAAATT
57264 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
57306 TA TA TA TA
1 TA TA TA TA
57314 CCCAAACGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:58578 original size:45 final size:45
Alignment explanation
Indices: 58513--59579 Score: 428
Period size: 45 Copynumber: 23.7 Consensus size: 45
58503 GAACAAAACT
* * * * **
58513 AAAAGATCGACTCCTATTCACGAAAAAGTTAAGGAATATTA-CACC
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAA-GAATAAAATCACC
*
58558 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
* * * * * *
58603 AAAAGGTTGACTTCTCTTCACGAGAAAGTCAAGAACAACACCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
* * * ** * *
58648 AAAAGTTTGACTTCTCTTCACCAGAAAGTCAAGTAGGACAA-CACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAG-AATAAAATCACC
* * * **
58693 AAAAGATTGACTCCTCTACGA-GAGAAAGTCAAGGAAGACAA-CATT
1 AAAAGATTGACTCCTCTTC-ACGAGAAAGTCAA-GAATAAAATCACC
* * * *
58738 AAAATATTGACTCCTCTTCCCGAGAAAGTCAAGAATAACATCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
* * * * * * * * *
58783 AAAAGGTTAAATTCTATTCACGAGAAAGTCAAGAACAACACCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
* * * * * ** * *
58828 AAAAGGTTAACTTCTCTTCACAACAAAGTCAAGTAGGACAA-CACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAG-AATAAAATCACC
* * ** ** * * * * *
58873 AAAATAATGACTATTCTTCGTGAAAAAGTTAAGGAAGACAA-CACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAA-GAATAAAATCACC
* * *
58918 AAAAGATTGACTCCTTTTCATGAGAAAGTCAAGAA-AAACATCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAA-ATCACC
* * * * * * * *
58963 AAAAGGTTGAGTTCTCTTCATGAGAAAGTCAAGAATGACACCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
* * * **
59008 AAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGTAGGAAAA-CA-C
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAG-AATAAAATCACC
* ** ** * *** *
59052 TAAAGATCAACTCCTCTTCGTGA-AACATTCAAGGAAGGCAA-CACT
1 AAAAGATTGACTCCTCTTCACGAGAA-AGTCAA-GAATAAAATCACC
* * * * * * *
59097 AAAAGATTGATTTCTCTTCACAAGAAAGTCAATAATAACACCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
* * * * * * ** * *
59142 AAAAGGTTGAGTTCTCTTAATGAGAAAGTGAAGTAGGACAA-CACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAG-AATAAAATCACC
* * * * * * * * *
59187 AAAAGATCGGCTCATCTGCGA-GAAAAATTCAAGGAAGACAA-CACT
1 AAAAGATTGACTCCTCTTC-ACGAGAAAGTCAA-GAATAAAATCACC
* * * * * *
59232 AAAATATTGACTCCTCTTCACAAGAAAGTTAAGAATTACATCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
* * * * * * **
59277 AAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAACAACACCAAT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
* * ** ** * *
59322 AAAATG-TTGACTTCTCTACACGAGAAAGAAAAGTAGGACAA-CACT
1 AAAA-GATTGACTCCTCTTCACGAGAAAGTCAAG-AATAAAATCACC
** * * * *
59367 AAAAGATCAACTCCTATTCGCGAGAAAGTCAAGAATAACATCACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
** * *
59412 AAAATG-TTGACTTTTCTTCATGAGAAAGTCAAGAATAACAAT-ACT
1 AAAA-GATTGACTCCTCTTCACGAGAAAGTCAAGAATAA-AATCACC
* * * * *
59457 GAAAGATTGACTTCTCTTCATGAGAAAGTCAAGAATGACAAT-ACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAAT-AAAATCACC
* * * * * *
59502 GAAAGATTGACTTCTCTTAATGAGAAAGTCAAGAATGACAAT-ACT
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAAT-AAAATCACC
* *
59547 GAAAGATTGACTCCTCTTCACGAGAGAGTCAAG
1 AAAAGATTGACTCCTCTTCACGAGAAAGTCAAG
59580 TTGAAGCTTC
Statistics
Matches: 802, Mismatches: 190, Indels: 60
0.76 0.18 0.06
Matches are distributed among these distances:
43 4 0.00
44 56 0.07
45 714 0.89
46 28 0.03
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (45 bp):
AAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACC
Found at i:58676 original size:135 final size:135
Alignment explanation
Indices: 58444--59579 Score: 932
Period size: 135 Copynumber: 8.4 Consensus size: 135
58434 TCATTTCTGT
* * * * * * *
58444 GAGAAAGTCCAGAATAACACCATTAAAAGGTTGGC-TCTTTTTCGTGAGAAAGCCAAGAAGAACA
1 GAGAAAGTCAAGAATAACATCACTAAAAGGTTGACTTC-TCTTCATGAGAAAGTCAAGAAGAACA
* * * * * * * ** *
58508 AAACTAAAAGATCGACTCCTATTCACGAAAAAGTTAAGGAATATTACACCAAAAGATTGACTCCT
65 ACACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGGAAGACAACACTAAAAGATTGACTCCT
58573 CTTCAC
130 CTTCAC
* * * *
58579 GAGAAAGTCAAGAATAAAATCACTAAAAGGTTGACTTCTCTTCACGAGAAAGTCAAGAACAACAC
1 GAGAAAGTCAAGAATAACATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAAGAACAA
* * * *
58644 CACTAAAAGTTTGACTTCTCTTCACCAGAAAGTCAAGTAGGACAACACTAAAAGATTGACTCCTC
66 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGGAAGACAACACTAAAAGATTGACTCCTC
*
58709 TACGA-
131 TTC-AC
* * * ** * ** *
58714 GAGAAAGTCAAGGAA-GACAACATTAAAATATTGACTCCTCTTCCCGAGAAAGTCAAGAATAACA
1 GAGAAAGTCAA-GAATAACATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAAGAACA
* * * * * * * * * *
58778 TCACTAAAAGGTTAAATTCTATTCACGAGAAAGTCAA-GAACAACACCACTAAAAGGTTAACTTC
65 ACACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGGAA-GACAACACTAAAAGATTGACTCC
58842 TCTTCAC
129 TCTTCAC
* * * ** * *** * * *
58849 AACAAAGTCAAGTAGGACAACACTAAAATAATGACTAT-TCTTCGTGAAAAAGTTAAGGAAG-AC
1 GAGAAAGTCAAGAATAACATCACTAAAAGGTTGACT-TCTCTTCATGAGAAAGTCAA-GAAGAAC
* * * * * * * * *
58912 AACACTAAAAGATTGACTCCTTTTCATGAGAAAGTCAAGAAAAACATCACTAAAAGGTTGAGTTC
64 AACACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGGAAGACAACACTAAAAGATTGACTCC
*
58977 TCTTCAT
129 TCTTCAC
* * *
58984 GAGAAAGTCAAGAATGACACCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGTAGGAA-A
1 GAGAAAGTCAAGAATAACATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAG-AAGAACA
** * ** * * * *
59048 ACACT-AAAGATCAACTCCTCTTCGTGA-AACATTCAAGGAAGGCAACACTAAAAGATTGATTTC
65 ACACTAAAAGATTGACTTCTCTTCACGAGAA-AGTCAAGGAAGACAACACTAAAAGATTGACTCC
59111 TCTTCAC
129 TCTTCAC
* * * * * * * *
59118 AAGAAAGTCAATAATAACACCACTAAAAGGTTGAGTTCTCTTAATGAGAAAGTGAAGTAGGACAA
1 GAGAAAGTCAAGAATAACATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAAGAACAA
* * * * * *
59183 CACTAAAAGATCGGC-TCATCTGCGA-GAAAAATTCAAGGAAGACAACACTAAAATATTGACTCC
66 CACTAAAAGATTGACTTC-TCTTC-ACGAGAAAGTCAAGGAAGACAACACTAAAAGATTGACTCC
59246 TCTTCAC
129 TCTTCAC
* * * * *
59253 AAGAAAGTTAAGAATTACATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAACAACAC
1 GAGAAAGTCAAGAATAACATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAAGAACAA
* * ** * * **
59318 CAATAAAATG-TTGACTTCTCTACACGAGAAAGAAAAGTAGGACAACACTAAAAGATCAACTCCT
66 CACTAAAA-GATTGACTTCTCTTCACGAGAAAGTCAAGGAAGACAACACTAAAAGATTGACTCCT
* *
59382 ATTCGC
130 CTTCAC
* * *
59388 GAGAAAGTCAAGAATAACATCACTAAAATGTTGACTTTTCTTCATGAGAAAGTCAAGAATAACAA
1 GAGAAAGTCAAGAATAACATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAAGAACAA
* * * * * *
59453 TACTGAAAGATTGACTTCTCTTCATGAGAAAGTCAA-GAATGACAATACTGAAAGATTGACTTCT
66 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGGAA-GACAACACTAAAAGATTGACTCCT
* *
59517 CTTAAT
130 CTTCAC
* * * * * *
59523 GAGAAAGTCAAGAATGACAAT-ACTGAAAGATTGACTCCTCTTCACGAGAGAGTCAAG
1 GAGAAAGTCAAGAATAAC-ATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAG
59580 TTGAAGCTTC
Statistics
Matches: 804, Mismatches: 173, Indels: 48
0.78 0.17 0.05
Matches are distributed among these distances:
133 4 0.00
134 117 0.15
135 664 0.83
136 19 0.02
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (135 bp):
GAGAAAGTCAAGAATAACATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAAGAACAA
CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGGAAGACAACACTAAAAGATTGACTCCTC
TTCAC
Found at i:58749 original size:180 final size:180
Alignment explanation
Indices: 58489--59580 Score: 975
Period size: 180 Copynumber: 6.1 Consensus size: 180
58479 TCTTTTTCGT
* * * * * * * * * **
58489 GAGAAAGCCAAGAAGAACAAAACTAAAAGATCGACTCCTATTC-ACGAAAAAGTTAAGGAATATT
1 GAGAAAGTCAAGTAGGACAACACTAAAAGATTGACTCCTCTTCGA-GAGAAAGTCAAGGAAGACA
*
58553 ACACCAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACTAAAAGGTTGACTTCT
65 ACACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACTAAAAGGTTGACTTCT
* * *
58618 CTTCACGAGAAAGTCAAGAACAACACCACTAAAAGTTTGACTTCTCTTCAC
130 CTTCACGAGAAAGTCAAGAACGACAACACTAAAAGATTGACTTCTCTTCAC
* *
58669 CAGAAAGTCAAGTAGGACAACACTAAAAGATTGACTCCTCTACGAGAGAAAGTCAAGGAAGACAA
1 GAGAAAGTCAAGTAGGACAACACTAAAAGATTGACTCCTCTTCGAGAGAAAGTCAAGGAAGACAA
* * * * * * *
58734 CATTAAAATATTGACTCCTCTTCCCGAGAAAGTCAAGAATAACATCACTAAAAGGTTAAATTCTA
66 CACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACTAAAAGGTTGACTTCTC
* * * *
58799 TTCACGAGAAAGTCAAGAACAACACCACTAAAAGGTTAACTTCTCTTCAC
131 TTCACGAGAAAGTCAAGAACGACAACACTAAAAGATTGACTTCTCTTCAC
* * * * ** * * *
58849 AACAAAGTCAAGTAGGACAACACTAAAATAATGACTATTCTTCGTGAAAAAGTTAAGGAAGACAA
1 GAGAAAGTCAAGTAGGACAACACTAAAAGATTGACTCCTCTTCGAGAGAAAGTCAAGGAAGACAA
* * *
58914 CACTAAAAGATTGACTCCTTTTCATGAGAAAGTCAAGAA-AAACATCACTAAAAGGTTGAGTTCT
66 CACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAA-ATCACTAAAAGGTTGACTTCT
* * * * *
58978 CTTCATGAGAAAGTCAAGAATGACACCACTAAAAGGTTGACTTCTCTTCAT
130 CTTCACGAGAAAGTCAAGAACGACAACACTAAAAGATTGACTTCTCTTCAC
* ** * * *
59029 GAGAAAGTCAAGTAGGAAAACACT-AAAGATCAACTCCTCTTCGTGA-AACATTCAAGGAAGGCA
1 GAGAAAGTCAAGTAGGACAACACTAAAAGATTGACTCCTCTTCGAGAGAA-AGTCAAGGAAGACA
* * * * * * *
59092 ACACTAAAAGATTGATTTCTCTTCACAAGAAAGTCAATAATAACACCACTAAAAGGTTGAGTTCT
65 ACACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACTAAAAGGTTGACTTCT
* * * * * * * *
59157 CTTAATGAGAAAGTGAAGTAGGACAACACTAAAAGATCGGC-TCATCTGCGA-
130 CTTCACGAGAAAGTCAAGAACGACAACACTAAAAGATTGACTTC-TCTTC-AC
* * * * * * * *
59208 GAAAAATTCAAGGAAGACAACACTAAAATATTGACTCCTCTTC-ACAAGAAAGTTAA-GAATTAC
1 GAGAAAGTCAAGTAGGACAACACTAAAAGATTGACTCCTCTTCGA-GAGAAAGTCAAGGAA-GAC
* * * * * * * * *
59271 ATCACTAAAAGGTTGACTTCTCTTCATGAGAAAGTCAAGAACAACACCAATAAAATGTTGACTTC
64 AACACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACTAAAAGGTTGACTTC
* ** * * ** * * *
59336 TCTACACGAGAAAGAAAAGTAGGACAACACTAAAAGATCAACTCCTATTCGC
129 TCTTCACGAGAAAGTCAAGAACGACAACACTAAAAGATTGACTTCTCTTCAC
* ** * ** *
59388 GAGAAAGTCAAGAATAACATCACTAAAATG-TTGACTTTTCTTC-ATGAGAAAGTCAA-GAATAA
1 GAGAAAGTCAAGTAGGACAACACTAAAA-GATTGACTCCTCTTCGA-GAGAAAGTCAAGGAA-GA
* * * * * * *
59450 CAATACTGAAAGATTGACTTCTCTTCATGAGAAAGTCAAGAATGACAAT-ACTGAAAGATTGACT
63 CAACACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAAT-AAAATCACTAAAAGGTTGACT
* * * * * *
59514 TCTCTTAATGAGAAAGTCAAGAATGACAATACTGAAAGATTGACTCCTCTTCAC
127 TCTCTTCACGAGAAAGTCAAGAACGACAACACTAAAAGATTGACTTCTCTTCAC
*
59568 GAGAGAGTCAAGT
1 GAGAAAGTCAAGT
59581 TGAAGCTTCA
Statistics
Matches: 747, Mismatches: 151, Indels: 28
0.81 0.16 0.03
Matches are distributed among these distances:
178 4 0.01
179 142 0.19
180 595 0.80
181 6 0.01
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (180 bp):
GAGAAAGTCAAGTAGGACAACACTAAAAGATTGACTCCTCTTCGAGAGAAAGTCAAGGAAGACAA
CACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAAATCACTAAAAGGTTGACTTCTC
TTCACGAGAAAGTCAAGAACGACAACACTAAAAGATTGACTTCTCTTCAC
Found at i:61087 original size:44 final size:44
Alignment explanation
Indices: 61024--61108 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
61014 TGCATTCATG
*
61024 GATGATATGAGCCTTTAAAAAAGCCCCAACATTTATCATTTTTT
1 GATGATACGAGCCTTTAAAAAAGCCCCAACATTTATCATTTTTT
* *
61068 GATGATACGAGCCTTTAAAAATGTCCCAACATTTATCATTT
1 GATGATACGAGCCTTTAAAAAAGCCCCAACATTTATCATTT
61109 CTTTCTCCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (44 bp):
GATGATACGAGCCTTTAAAAAAGCCCCAACATTTATCATTTTTT
Found at i:63609 original size:4 final size:4
Alignment explanation
Indices: 63600--63624 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
63590 GTTTTTTGCA
63600 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
63625 TGAGGAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:66980 original size:26 final size:26
Alignment explanation
Indices: 66951--67004 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
66941 AGCCACAAGC
*
66951 ATAACTTAAT-ATAATGAT-TAACCCAT
1 ATAA-TTAATGATAATAATATAA-CCAT
66977 ATAATTAATGATAATAATATAACCAT
1 ATAATTAATGATAATAATATAACCAT
67003 AT
1 AT
67005 GTAAATAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 5 0.20
26 17 0.68
27 3 0.12
ACGTcount: A:0.50, C:0.11, G:0.04, T:0.35
Consensus pattern (26 bp):
ATAATTAATGATAATAATATAACCAT
Found at i:67237 original size:75 final size:75
Alignment explanation
Indices: 67114--67446 Score: 443
Period size: 75 Copynumber: 4.4 Consensus size: 75
67104 CTTAATCGGT
* * * ** *
67114 TAAAATAAAATAGGTGTTACCTATTATGTTAAACTACCTATCAATTTGTTTGAAGGTTACAAATA
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTATCGGTTTGTTTAAAGGTTACAAATA
* *
67179 ATGTAAATGA
66 ATGTAAACGG
* *
67189 TAAAATAAAATAGGCGCTACCTATTACGTTAAAATACCTATCGGTTTGTTTAAAGGTTACTAATA
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTATCGGTTTGTTTAAAGGTTACAAATA
67254 ATGTAAACGG
66 ATGTAAACGG
* * * * * *
67264 TAAAATAAAATAGACACTACTTATTACGTTAAACTACCTACCGGTTTGTTTAAAAGTTACTAATA
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTATCGGTTTGTTTAAAGGTTACAAATA
67329 ATGTAAACGG
66 ATGTAAACGG
* * *
67339 TAAAATAAAATAGGCGCTCCCTATTACGTTAAACTAGCTATCGGTTTATTTAAAGGTTA-ATAAT
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTATCGGTTTGTTTAAAGGTTACA-AAT
*
67403 ATTGTAAACGG
65 AATGTAAACGG
* * *
67414 TAAAATAAAATATGTGCTACCTATTATGTTAAA
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAA
67447 TAAGCGCTAC
Statistics
Matches: 227, Mismatches: 30, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
75 227 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (75 bp):
TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTATCGGTTTGTTTAAAGGTTACAAATA
ATGTAAACGG
Found at i:67439 original size:150 final size:149
Alignment explanation
Indices: 67114--67590 Score: 476
Period size: 150 Copynumber: 3.2 Consensus size: 149
67104 CTTAATCGGT
* * * *
67114 TAAAATAAAATAGGTGTTACCTATTATGTTAAACTACCTATCAATTTGTTTGAAGGTTACAAATA
1 TAAAATAAAATA-GTGCTACCTATTATGTTAAACTACCTACCAATTTGTTTAAAAGTTACAAATA
* *
67179 ATGTAAATGATAAAATAAAATAGGCGCTACCTATTACGTTAAAATACCTATCGGTTTGTTTAAAG
65 ATGTAAACGATAAAATAAAATAGGCGCTACCTATTACGTTAAAATACCTATCGGTTTATTTAAAG
*
67244 GTTACTAATAATGTAAACGG
130 GTTAATAATAATGTAAACGG
** * * ** *
67264 TAAAATAAAATAGACACTACTTATTACGTTAAACTACCTACCGGTTTGTTTAAAAGTTACTAATA
1 TAAAATAAAATAG-TGCTACCTATTATGTTAAACTACCTACCAATTTGTTTAAAAGTTACAAATA
* * * *
67329 ATGTAAACGGTAAAATAAAATAGGCGCTCCCTATTACGTTAAACTAGCTATCGGTTTATTTAAAG
65 ATGTAAACGATAAAATAAAATAGGCGCTACCTATTACGTTAAAATACCTATCGGTTTATTTAAAG
*
67394 GTTAATAATATTGTAAACGG
130 GTTAATAATAATGTAAACGG
* * * *
67414 TAAAATAAAATATGTGCTACCTATTATGTTAAA-TAAGCGCTACCTATTACGTTAAATAAACGCT
1 TAAAATAAAATA-GTGCTACCTATTATGTTAAACT-A-C-CTACCAATT-TGTT---TAAAAGTT
* * * * * * *
67478 AC--CT-AT-T--ACG-T----T-AAATAGGCGCTACCTATTACATTAAACTAGCTACCAGTTTG
58 ACAAATAATGTAAACGATAAAATAAAATAGGCGCTACCTATTACGTTAAAATACCTATCGGTTTA
**
67531 TTTAAAGGTTAATAATAATGTAAACAA
123 TTTAAAGGTTAATAATAATGTAAACGG
67558 TAAAATAAAATATGTGCTACCTATTATGTTAAA
1 TAAAATAAAATA-GTGCTACCTATTATGTTAAA
67591 TAGATGCTGC
Statistics
Matches: 281, Mismatches: 37, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
144 93 0.33
145 1 0.00
149 3 0.01
150 160 0.57
151 2 0.01
152 8 0.03
153 5 0.02
154 1 0.00
156 8 0.03
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (149 bp):
TAAAATAAAATAGTGCTACCTATTATGTTAAACTACCTACCAATTTGTTTAAAAGTTACAAATAA
TGTAAACGATAAAATAAAATAGGCGCTACCTATTACGTTAAAATACCTATCGGTTTATTTAAAGG
TTAATAATAATGTAAACGG
Found at i:67448 original size:23 final size:23
Alignment explanation
Indices: 67429--67515 Score: 138
Period size: 23 Copynumber: 3.8 Consensus size: 23
67419 TAAAATATGT
*
67429 GCTACCTATTATGTTAAATAAGC
1 GCTACCTATTACGTTAAATAAGC
*
67452 GCTACCTATTACGTTAAATAAAC
1 GCTACCTATTACGTTAAATAAGC
*
67475 GCTACCTATTACGTTAAATAGGC
1 GCTACCTATTACGTTAAATAAGC
*
67498 GCTACCTATTACATTAAA
1 GCTACCTATTACGTTAAA
67516 CTAGCTACCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (23 bp):
GCTACCTATTACGTTAAATAAGC
Found at i:67547 original size:144 final size:144
Alignment explanation
Indices: 67346--67616 Score: 427
Period size: 144 Copynumber: 1.9 Consensus size: 144
67336 CGGTAAAATA
* * * * *
67346 AAATAGGCGCTCCCTATTACGTTAAACTAGCTATCGGTTTATTTAAAGGTTAATAATATTGTAAA
1 AAATAGGCGCTACCTATTACATTAAACTAGCTACCAGTTTATTTAAAGGTTAATAATAATGTAAA
**
67411 CGGTAAAATAAAATATGTGCTACCTATTATGTTAAATA-AGCGCTACCTATTACGTTAAATAAAC
66 CAATAAAATAAAATATGTGCTACCTATTATGTTAAATAGA-CGCTACCTATTACGTTAAATAAAC
67475 GCTACCTATTACGTT
130 GCTACCTATTACGTT
*
67490 AAATAGGCGCTACCTATTACATTAAACTAGCTACCAGTTTGTTTAAAGGTTAATAATAATGTAAA
1 AAATAGGCGCTACCTATTACATTAAACTAGCTACCAGTTTATTTAAAGGTTAATAATAATGTAAA
* * *
67555 CAATAAAATAAAATATGTGCTACCTATTATGTTAAATAGATGCTGCCTATTATGTTAAATAA
66 CAATAAAATAAAATATGTGCTACCTATTATGTTAAATAGACGCTACCTATTACGTTAAATAA
67617 GTGTTACATA
Statistics
Matches: 115, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
144 114 0.99
145 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.34
Consensus pattern (144 bp):
AAATAGGCGCTACCTATTACATTAAACTAGCTACCAGTTTATTTAAAGGTTAATAATAATGTAAA
CAATAAAATAAAATATGTGCTACCTATTATGTTAAATAGACGCTACCTATTACGTTAAATAAACG
CTACCTATTACGTT
Found at i:67569 original size:121 final size:121
Alignment explanation
Indices: 67444--67685 Score: 322
Period size: 121 Copynumber: 2.0 Consensus size: 121
67434 CTATTATGTT
* *
67444 AAATAAGCGCTACCTATTACGTTAAATAAACGCTACCTATTACGTTAAATAGGCGCTACCTATTA
1 AAATAAGCGCTACCTATTACGTTAAATAAACGCTACCTATTACGTTAAATAAGCGCTACATATTA
* *
67509 CATTAAACTAGCTACCAGTTTGTTTAAAGGTTAATAATAATGTAAACAATAAAATA
66 CATTAAACTAACTACCAGTTTATTTAAAGGTTAATAATAATGTAAACAATAAAATA
* * * * * * * * *
67565 AAATATGTGCTACCTATTATGTTAAATAGATGCTGCCTATTATGTTAAATAAGTGTTACATATTA
1 AAATAAGCGCTACCTATTACGTTAAATAAACGCTACCTATTACGTTAAATAAGCGCTACATATTA
** * **
67630 TGTTAAACTAACTACCGGTTTATTTAAAGGTTAATAATAATGTAAACGGTAAAATA
66 CATTAAACTAACTACCAGTTTATTTAAAGGTTAATAATAATGTAAACAATAAAATA
67686 TATACAACTT
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
121 103 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (121 bp):
AAATAAGCGCTACCTATTACGTTAAATAAACGCTACCTATTACGTTAAATAAGCGCTACATATTA
CATTAAACTAACTACCAGTTTATTTAAAGGTTAATAATAATGTAAACAATAAAATA
Found at i:67591 original size:23 final size:22
Alignment explanation
Indices: 67565--67636 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 22
67555 CAATAAAATA
67565 AAATATGTGCTACCTATTATGTT
1 AAATA-GTGCTACCTATTATGTT
*
67588 AAATAGATGCTGCCTATTATGTT
1 AAATAG-TGCTACCTATTATGTT
* *
67611 AAATAAGTGTTACATATTATGTT
1 AAAT-AGTGCTACCTATTATGTT
67634 AAA
1 AAA
67637 CTAACTACCG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
22 1 0.02
23 40 0.93
24 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (22 bp):
AAATAGTGCTACCTATTATGTT
Found at i:69397 original size:17 final size:17
Alignment explanation
Indices: 69375--69409 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
69365 GAAATTTATG
69375 TCAAATTTATTAACAAC
1 TCAAATTTATTAACAAC
69392 TCAAATTTATTAACAAC
1 TCAAATTTATTAACAAC
69409 T
1 T
69410 TTCAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (17 bp):
TCAAATTTATTAACAAC
Found at i:69893 original size:2 final size:2
Alignment explanation
Indices: 69888--69925 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
69878 TTAAAAAAAA
69888 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69926 TAAAAAGCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72802 original size:10 final size:10
Alignment explanation
Indices: 72774--72808 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
72764 TATGCGAGAA
*
72774 AAAAAGAAAT
1 AAAAAGAATT
72784 AAAATAGAATT
1 AAAA-AGAATT
72795 AAAAAGAATT
1 AAAAAGAATT
72805 AAAA
1 AAAA
72809 TTTGAGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (10 bp):
AAAAAGAATT
Found at i:73463 original size:108 final size:107
Alignment explanation
Indices: 73335--73535 Score: 294
Period size: 108 Copynumber: 1.9 Consensus size: 107
73325 AATTTGTGTA
** * * *
73335 TATATTTTTATTTTTAGAAATGAAAATTCATAAACATGCATAATAAATATAGATATTTAAAATAA
1 TATATTTTTATTTTTAGAAATGAAAATTCATAAACACACATAATAAACATAAATAATTAAAATAA
* *
73400 AATTATAAATATAAATTTAATTAAAAATGTTTAAAATATTTT
66 AATCATAAATATAAATTGAATTAAAAATGTTTAAAATATTTT
* * * *
73442 TATATTTTTTTGTTTTAGAAATGAAAATTCATAAACCCACATATTAACCATAAATAATTAAAATA
1 TATATTTTTAT-TTTTAGAAATGAAAATTCATAAACACACATAATAAACATAAATAATTAAAATA
73507 AAATCATAAATATAAATTGAATTAAAAAT
65 AAATCATAAATATAAATTGAATTAAAAAT
73536 ATTTTAATTT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
107 10 0.12
108 72 0.88
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.39
Consensus pattern (107 bp):
TATATTTTTATTTTTAGAAATGAAAATTCATAAACACACATAATAAACATAAATAATTAAAATAA
AATCATAAATATAAATTGAATTAAAAATGTTTAAAATATTTT
Found at i:73612 original size:18 final size:18
Alignment explanation
Indices: 73585--73628 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
73575 ATTGAAGTTT
*
73585 CAACTTAAAGAAGATAAA
1 CAACTCAAAGAAGATAAA
* *
73603 CAACTCAAAGATGATCAA
1 CAACTCAAAGAAGATAAA
73621 CAAC-CAAA
1 CAACTCAAA
73629 CATGAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.57, C:0.20, G:0.09, T:0.14
Consensus pattern (18 bp):
CAACTCAAAGAAGATAAA
Found at i:76674 original size:20 final size:20
Alignment explanation
Indices: 76649--76688 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76639 CAGAACCAGT
76649 CATGATGATCTTCTTTTGTG
1 CATGATGATCTTCTTTTGTG
76669 CATGATGATCTTCTTTTGTG
1 CATGATGATCTTCTTTTGTG
76689 GGTATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.50
Consensus pattern (20 bp):
CATGATGATCTTCTTTTGTG
Found at i:80678 original size:29 final size:29
Alignment explanation
Indices: 80636--80707 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
80626 AAACCACTCT
*
80636 TCCATTTTATTCTTTATGAATATTGATAC
1 TCCATTTTCTTCTTTATGAATATTGATAC
80665 TCCATTTTCTTCTTTATGAATATTGATAC
1 TCCATTTTCTTCTTTATGAATATTGATAC
80694 TCCA-TTTCTTCTTT
1 TCCATTTTCTTCTTT
80708 CAAGGCACTT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 10 0.24
29 32 0.76
ACGTcount: A:0.22, C:0.18, G:0.06, T:0.54
Consensus pattern (29 bp):
TCCATTTTCTTCTTTATGAATATTGATAC
Found at i:82530 original size:2 final size:2
Alignment explanation
Indices: 82523--82555 Score: 57
Period size: 2 Copynumber: 16.0 Consensus size: 2
82513 GAAGTGTTGC
82523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
82556 GTTTATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 28 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:88715 original size:77 final size:75
Alignment explanation
Indices: 88618--88759 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 75
88608 ATAGTAAGTA
* *
88618 AACATTAAAAGAATGTAATTCTGATTACAACTCTTTTAATTGATATTTAATTCAAAATAATTAAA
1 AACATTAAAAGAATGTAATTCAGATTACAACTC-TTTAA-T-AGATTTAATTCAAAATAATTAAA
88683 TAAGAGTTTAAAT
63 TAAGAGTTTAAAT
* * * ** *
88696 AACATT-AAAGATTGTAATTCAGATTATAAGTCTTTAATAGATTTAATTTGAATTAATTAAATAA
1 AACATTAAAAGAATGTAATTCAGATTACAACTCTTTAATAGATTTAATTCAAAATAATTAAATAA
88760 TTTTTATTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
74 22 0.39
75 1 0.02
76 5 0.09
77 22 0.39
78 6 0.11
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.39
Consensus pattern (75 bp):
AACATTAAAAGAATGTAATTCAGATTACAACTCTTTAATAGATTTAATTCAAAATAATTAAATAA
GAGTTTAAAT
Found at i:89394 original size:5 final size:5
Alignment explanation
Indices: 89384--89415 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
89374 CTATTCCATT
89384 TTCTC TTCTC TTCTC TTCTC TTCT- TTCT- TTCT
1 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCT
89416 TTTATTCCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 8 0.30
5 19 0.70
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (5 bp):
TTCTC
Found at i:93466 original size:20 final size:20
Alignment explanation
Indices: 93441--93489 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
93431 ATTTTCTAAG
* * *
93441 TTGTAGTATCGATATTGTTC
1 TTGTAGTATCAATACTATTC
93461 TTGTAGTATCAATACTATTC
1 TTGTAGTATCAATACTATTC
*
93481 TTATAGTAT
1 TTGTAGTAT
93490 TTGTACTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.10, G:0.14, T:0.49
Consensus pattern (20 bp):
TTGTAGTATCAATACTATTC
Found at i:93557 original size:15 final size:15
Alignment explanation
Indices: 93493--93560 Score: 91
Period size: 15 Copynumber: 4.5 Consensus size: 15
93483 ATAGTATTTG
*
93493 TACTATGAGTACCAA
1 TACTGTGAGTACCAA
* *
93508 TACTATGAGTACCGA
1 TACTGTGAGTACCAA
**
93523 TACTGTGAGTACTGA
1 TACTGTGAGTACCAA
93538 TACTGTGAGTACCAA
1 TACTGTGAGTACCAA
93553 TACTGTGA
1 TACTGTGA
93561 TTACAGTACC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 48 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (15 bp):
TACTGTGAGTACCAA
Found at i:94731 original size:35 final size:35
Alignment explanation
Indices: 94567--94733 Score: 146
Period size: 35 Copynumber: 4.8 Consensus size: 35
94557 AATAGTAATA
* * **
94567 TATCATGTGTCGCATCCAGATAATACACAATA-T-
1 TATCATGTGTCGCATTCAGATAATGCACAGCAGTG
* * *
94600 TGTCATGTGTTTG-ATTCAGATAATACACCA-CAGTG
1 TATCATGTG-TCGCATTCAGATAATGCA-CAGCAGTG
* * * *
94635 TGTCATGTGTCGTATTCAGATAATGCACAGTAGCG
1 TATCATGTGTCGCATTCAGATAATGCACAGCAGTG
* *
94670 TATCATGTATCGCATTCAGATAATGCATAGCAGTG
1 TATCATGTGTCGCATTCAGATAATGCACAGCAGTG
*
94705 TATCATGTGTCGCATTTAGAGT-ATGCACA
1 TATCATGTGTCGCATTCAGA-TAATGCACA
94734 ACAATTATAG
Statistics
Matches: 110, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
33 22 0.20
34 9 0.08
35 78 0.71
36 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (35 bp):
TATCATGTGTCGCATTCAGATAATGCACAGCAGTG
Found at i:103395 original size:4 final size:4
Alignment explanation
Indices: 103386--103425 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
103376 AACTTGTTAC
103386 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
103426 GTTCAAACCA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 3 0.09
4 32 0.91
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:103642 original size:15 final size:15
Alignment explanation
Indices: 103610--103657 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
103600 ATTTCATTAC
* * *
103610 TTTAATTTTTTGTTA
1 TTTAAATTTATGTCA
*
103625 TTTACATTTATGTCA
1 TTTAAATTTATGTCA
*
103640 TTTAAATTTATGTTA
1 TTTAAATTTATGTCA
103655 TTT
1 TTT
103658 TAATCTGTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTAAATTTATGTCA
Found at i:109761 original size:104 final size:102
Alignment explanation
Indices: 109582--110129 Score: 486
Period size: 98 Copynumber: 5.4 Consensus size: 102
109572 AGCAAAGATA
* * * * *
109582 AAAATGGATCTCACTTGAGATTGTTTTTCTTAAAATCAATTTTGTATTGTTTAAGACAATTTTCT
1 AAAATTGATCTCACTTGAGATTATTTTTCTTAAAATCAATTTTGTATTGCTTGAGACAATTTTCC
* * *
109647 CTTGAAACACAAATTGTGAAATTGATTCACTTGAAACC
66 CTTGAAACACAAATTTTGAAATTGTTTCACTCGAAA-C
* * * * * * *
109685 AAAATAGATCTCACTTGATATTATTTTTCCTTAAAATCAATTTCGTCTCGCTTGAGATAGTTTTC
1 AAAATTGATCTCACTTGAGATTATTTTT-CTTAAAATCAATTTTGTATTGCTTGAGACAATTTTC
109750 CCTTGAAACACAAATTTTGAAATTGTTTCACTCGAAAC
65 CCTTGAAACACAAATTTTGAAATTGTTTCACTCGAAAC
* ** *
109788 AAAATTGATCTCACTTGAGATTATTTTTC---AAACCAAATTTAATATTGCTTGAAACAAATTTT
1 AAAATTGATCTCACTTGAGATTATTTTTCTTAAAATC-AATTTTGTATTGCTTGAGAC-AATTTT
* * *
109850 CCCTTGAAACACAAAATTTGGAATTTGTTTCACTTGAAAGC
64 CCCTTGAAACAC-AAATTTTGAAATTGTTTCACTCGAAA-C
** * *
109891 -AAATTGATCTCACTTGAGATTGGTTTT-TTAAAATAAATTTTGTCTTGCTTGAGACAA-TTT-C
1 AAAATTGATCTCACTTGAGATTATTTTTCTTAAAATCAATTTTGTATTGCTTGAGACAATTTTCC
109952 CTTCG-AA-ACAAATTTTGAAATTGTTTCACTCGAAA-
66 CTT-GAAACACAAATTTTGAAATTGTTTCACTCGAAAC
* * * ** * * * * * *
109987 AATTACT-ATCTCATTTGAGATGGTTTCTCTTAAAGTCAATTTCGTCTT-TTTGA-AGC-AGTTT
1 AA-AATTGATCTCACTTGAGATTATTTTTCTTAAAATCAATTTTGTATTGCTTGAGA-CAATTTT
* * *
110048 CCCTTGAAA-ACAAATTTTGAAATTGTTTCCCTTGAAAAAA
64 CCCTTGAAACACAAATTTTGAAATTGTTTCACTCG--AAAC
110088 AAAATT-A-C-CACTTGAGATGGT-TTTTTCTTAAAATCAATTTTG
1 AAAATTGATCTCACTTGAGAT--TATTTTTCTTAAAATCAATTTTG
110130 CTTGAAATAG
Statistics
Matches: 367, Mismatches: 57, Indels: 46
0.78 0.12 0.10
Matches are distributed among these distances:
96 2 0.01
97 27 0.07
98 79 0.22
99 25 0.07
100 26 0.07
101 23 0.06
102 51 0.14
103 69 0.19
104 65 0.18
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (102 bp):
AAAATTGATCTCACTTGAGATTATTTTTCTTAAAATCAATTTTGTATTGCTTGAGACAATTTTCC
CTTGAAACACAAATTTTGAAATTGTTTCACTCGAAAC
Found at i:109896 original size:102 final size:100
Alignment explanation
Indices: 109582--110089 Score: 396
Period size: 103 Copynumber: 5.0 Consensus size: 100
109572 AGCAAAGATA
* * * *
109582 AAAATGGATCTCACTTGAGATTGTTTTTCTTAAAATCAATTTTGTATTG-TTTAAGACAATTTTC
1 AAAATTGATCTCACTTGAGATTATTTTTC-T-AAATCAATTTAGTATTGCTTGAA-ACAATTTTC
* *
109646 TCTTGAAACACAAA-TTGTGAAATTGATTCACTTGAAACC
63 CCTTGAAACACAAATTTG-GAAATTGTTTCACTTGAAA-C
* * * * * * * *
109685 AAAATAGATCTCACTTGATATTATTTTTCCTTAAAATCAATTTCGTCTCGCTTGAGATAGTTTTC
1 AAAATTGATCTCACTTGAGATTATTTTT-C-T-AAATCAATTTAGTATTGCTTGAAACAATTTTC
* *
109750 CCTTGAAACACAAATTTTGAAATTGTTTCACTCGAAAC
63 CCTTGAAACACAAATTTGGAAATTGTTTCACTTGAAAC
* *
109788 AAAATTGATCTCACTTGAGATTATTTTTC-AAACCAAATTTAATATTGCTTGAAACAAATTTTCC
1 AAAATTGATCTCACTTGAGATTATTTTTCTAAATC-AATTTAGTATTGCTTGAAAC-AATTTTCC
*
109852 CTTGAAACACAAAATTTGGAATTTGTTTCACTTGAAAGC
64 CTTGAAACAC-AAATTTGGAAATTGTTTCACTTGAAA-C
* * * * *
109891 -AAATTGATCTCACTTGAGATTGGTTTTT-TAAAATAAATTTTGTCTTGCTTGAGACAA-TTT-C
1 AAAATTGATCTCACTTGAGATT-ATTTTTCT-AAATCAATTTAGTATTGCTTGAAACAATTTTCC
* *
109952 CTTCG-AA-ACAAATTTTGAAATTGTTTCACTCGAAA-
64 CTT-GAAACACAAATTTGGAAATTGTTTCACTTGAAAC
* * * ** * * * * * *
109987 AATTACT-ATCTCATTTGAGATGGTTTCTCTTAAAGTCAATTTCGTCTT-TTTGAAGC-AGTTTC
1 AA-AATTGATCTCACTTGAGATTATTTTTC-TAAA-TCAATTTAGTATTGCTTGAAACAATTTTC
* * *
110049 CCTTGAAA-ACAAATTTTGAAATTGTTTCCCTTGAAAA
63 CCTTGAAACACAAATTTGGAAATTGTTTCACTTGAAAC
110086 AAAA
1 AAAA
110090 AATTACCACT
Statistics
Matches: 335, Mismatches: 50, Indels: 45
0.78 0.12 0.10
Matches are distributed among these distances:
96 6 0.02
97 26 0.08
98 70 0.21
99 8 0.02
100 20 0.06
101 21 0.06
102 47 0.14
103 74 0.22
104 58 0.17
105 5 0.01
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.39
Consensus pattern (100 bp):
AAAATTGATCTCACTTGAGATTATTTTTCTAAATCAATTTAGTATTGCTTGAAACAATTTTCCCT
TGAAACACAAATTTGGAAATTGTTTCACTTGAAAC
Found at i:110724 original size:136 final size:134
Alignment explanation
Indices: 110464--110850 Score: 524
Period size: 136 Copynumber: 2.8 Consensus size: 134
110454 GGATAATTAG
* * * *
110464 TCAACATTTCTAGTCGAGAGTTCATAATGAGAATAACTCATCCGATGAGGGAGAAGGAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAA-AACTCAT-TGATGAGGGAGAAGAAGTTCATA
* *
110529 ATAAGAAGAACTTGTTCAACCTTAGCTCGATTGATCACATATGGAGTTGAATCAGCAACACCTCA
64 AT--G-AGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTCA
110594 CTCGAGGGA
126 CTCGAGGGA
* *
110603 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATATGAGGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAA-AACTCAT-TGATGAGGGAGAAGAAGTTCATA
*
110668 ATGAGAACTTTTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTCACTC
64 ATGAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTCACTC
110733 GAGGGA
129 GAGGGA
** *
110739 TCAACATTTCCAGTGGAGAGTTCATAATGAG-AAACTTGTTCGATGAGGGAGAAGAAGTTTATAA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAAACTCATT-GATGAGGGAGAAGAAGTTCATAA
* * * *
110803 TGAGAAGAGTTGTTCAACCTTAGCTCGTTTCCATCAAATAAGGAGTTG
65 TGAG-A-ACTTGTTCAACCTTAGCTCGATT-CATCACATATGGAGTTG
110851 TAACAGCACC
Statistics
Matches: 223, Mismatches: 21, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
133 1 0.00
134 30 0.13
135 2 0.01
136 115 0.52
137 16 0.07
139 59 0.26
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (134 bp):
TCAACATTTCCAGTGGAGAGTTCATAATGAGAAAACTCATTGATGAGGGAGAAGAAGTTCATAAT
GAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTCACTCGA
GGGA
Found at i:111101 original size:3 final size:3
Alignment explanation
Indices: 111093--111130 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
111083 CGTTCCACCA
*
111093 TAT TAT TAT TAT TAT TAT TAT TAT GAT TAAT TA- TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA
111131 CAGGCCCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 26 0.84
4 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Done.