genome.fa.s4171.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004171.1 Hibiscus syriacus cultivar Beakdansim tig00009126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96570

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1170--1222	27	2.0	27	85	14	74	58	1	13	26	1.45
1547--2161	2	308.5	2	63	23	133	48	4	4	42	1.43
1637--1697	9	6.7	9	73	17	54	47	8	1	42	1.43
1637--1729	17	5.2	17	78	11	89	46	9	3	40	1.53
1637--1729	35	2.6	36	86	11	129	46	9	3	40	1.53
1841--1882	17	2.4	18	92	4	50	42	2	4	50	1.36
1897--2390	22	24.6	19	68	24	120	52	3	6	38	1.42
1897--2176	58	4.7	60	66	20	160	52	2	4	40	1.37
1941--2400	13	37.4	12	70	23	117	53	3	6	37	1.42
1943--2294	25	14.1	24	71	23	121	52	3	6	38	1.42
2152--2402	56	4.5	54	78	16	221	53	2	7	35	1.45
2128--2386	34	7.4	34	71	21	123	53	2	6	36	1.42
2082--2402	7	47.0	7	69	22	113	53	2	7	36	1.44
2233--2393	20	7.4	21	73	21	104	53	3	6	36	1.43
3164--3196	16	2.0	17	88	5	50	45	18	15	21	1.85
3200--3229	14	2.1	14	93	0	51	36	16	20	26	1.93
4562--4592	16	2.0	16	93	6	55	61	6	12	19	1.53
10521--10571	26	2.0	26	84	0	66	49	3	3	43	1.39
10521--11898	464	3.0	465	89	5	2085	37	13	9	40	1.76
12193--12242	22	2.3	22	82	3	57	40	4	0	56	1.18
12508--12555	21	2.2	23	85	7	64	50	2	2	45	1.25
12542--12585	19	2.2	20	85	14	65	36	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12544--12604	23	2.9	21	85	9	72	37	1	1	59	1.17
13283--13319	16	2.3	16	95	0	65	32	10	27	29	1.90
13702--13780	15	5.3	15	73	14	65	60	11	5	22	1.50
13687--13825	30	4.6	30	75	5	120	61	10	5	23	1.49
13695--13825	60	2.2	60	91	0	208	61	10	5	22	1.49
13695--13850	60	2.6	59	83	2	195	60	10	5	23	1.51
23890--23935	3	15.0	3	86	4	65	32	2	2	63	1.19
24894--24928	18	1.9	18	94	0	61	11	54	2	31	1.51
27629--27663	6	5.5	6	87	12	52	17	20	14	48	1.81
27629--27671	20	2.2	20	100	0	86	16	20	13	48	1.80
27631--27657	14	1.9	14	100	0	54	14	18	14	51	1.76
34683--34776	42	2.3	42	83	1	127	22	20	22	35	1.96
37547--38070	105	4.9	105	84	5	581	39	16	19	24	1.91
38009--38079	32	2.2	32	97	0	133	39	14	21	25	1.90
38022--38073	16	3.2	16	70	20	54	42	13	19	25	1.87
37892--38192	144	2.1	146	84	4	401	39	13	19	26	1.89
38041--38584	117	4.7	117	90	2	796	38	13	21	26	1.90
37793--38308	261	2.0	256	90	2	818	39	13	20	26	1.90
37690--38425	378	2.0	361	85	5	990	38	14	20	25	1.91
38399--38461	20	3.2	20	66	20	51	44	12	19	23	1.85
38792--38838	3	15.7	3	78	8	51	31	4	2	61	1.27
42458--42482	11	2.3	11	100	0	50	64	0	8	28	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44683--44718	18	2.0	18	94	0	63	41	0	0	58	0.98
46221--46251	2	15.5	2	100	0	62	51	0	0	48	1.00
46363--46390	2	14.0	2	100	0	56	50	0	0	50	1.00
47048--47160	45	2.5	45	82	5	131	40	11	15	32	1.83
47386--47471	45	1.9	45	88	4	129	40	12	4	41	1.64
47539--47686	61	2.5	60	92	2	235	16	11	22	48	1.79
51813--51853	18	2.2	19	86	4	57	24	4	12	58	1.53
51813--51853	19	2.2	19	86	8	57	24	4	12	58	1.53
58429--58484	24	2.4	24	77	22	73	8	21	19	50	1.75
59246--59295	21	2.4	22	80	10	68	46	12	22	20	1.83
59828--59887	29	2.0	30	84	9	79	65	1	13	20	1.35
60098--60127	13	2.2	14	94	5	53	76	3	0	20	0.92
60098--60130	14	2.4	14	90	10	50	75	3	0	21	0.93
60876--60926	25	1.9	25	84	11	66	9	3	29	56	1.49
61448--61510	4	16.8	4	75	9	53	73	3	4	19	1.15
61521--61583	30	2.1	29	85	2	81	50	7	1	39	1.41
61629--61881	38	6.8	37	82	10	223	45	7	5	41	1.55
61662--61867	75	2.7	75	81	9	265	46	7	5	40	1.54
61791--61815	12	2.1	12	100	0	50	44	8	8	40	1.63
62479--63637	164	7.0	164	93	1	1826	25	20	23	30	1.99
66966--67011	19	2.4	19	96	0	83	65	10	13	10	1.48
68699--68759	30	2.0	30	84	6	79	65	1	13	19	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68973--69015	22	2.0	22	86	9	61	76	2	2	18	1.00
68972--69001	13	2.2	14	94	5	53	76	3	0	20	0.92
68972--69004	14	2.4	14	90	10	50	75	3	0	21	0.93
70318--70380	4	16.8	4	75	9	53	73	3	4	19	1.15
70391--70453	30	2.1	29	85	2	81	50	7	1	39	1.41
70499--70749	37	6.8	37	82	9	221	45	7	5	41	1.56
70532--70735	75	2.7	75	81	9	263	46	7	5	40	1.55
70661--70685	12	2.1	12	100	0	50	44	8	8	40	1.63
78971--79013	21	2.0	21	86	0	59	18	37	6	37	1.78
79505--79623	37	3.2	36	91	3	175	35	16	14	33	1.89
80180--80242	31	2.0	31	100	0	126	26	31	9	31	1.88
84919--85031	36	3.1	36	92	0	163	35	18	13	32	1.90
86950--87025	22	3.5	22	94	0	134	46	1	10	42	1.46
88023--88076	20	2.7	20	80	5	65	66	3	0	29	1.09
94389--94475	29	3.0	29	89	0	120	14	33	8	43	1.75
94886--94919	18	1.9	18	88	5	52	29	0	0	70	0.87
94858--94929	30	2.3	31	85	4	92	30	1	2	65	1.15

Tables:   1

The End!