genome.fa.s4172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004172.1 Hibiscus syriacus cultivar Beakdansim tig00009127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73988

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--71	23	3.3	21	73	13	72	50	15	19	14	1.77
97--202	19	5.8	19	77	14	82	11	23	18	46	1.82
141--200	20	3.1	19	85	2	84	11	26	16	45	1.82
1872--2173	92	3.3	93	96	1	565	22	14	18	44	1.86
2285--2341	14	3.7	14	72	20	51	43	24	22	8	1.81
2299--2360	19	3.6	18	72	20	60	45	27	19	8	1.78
2267--2390	33	3.7	33	90	1	176	46	27	16	8	1.77
2316--2379	14	4.3	14	76	19	67	50	28	15	6	1.68
2332--2390	19	3.4	19	77	22	74	49	30	13	6	1.68
2386--2539	19	8.6	19	75	13	130	11	18	23	46	1.82
2408--2469	32	1.9	32	93	0	106	12	19	20	46	1.83
2473--2539	35	1.9	35	87	6	100	10	17	25	46	1.80
2991--3050	20	3.0	20	70	4	57	25	36	18	20	1.94
4446--4481	14	2.6	14	95	0	63	33	0	22	44	1.53
4587--4685	20	5.4	19	84	12	136	45	17	23	14	1.84
4587--4701	52	2.2	52	93	6	198	43	18	24	13	1.86
4693--4925	72	3.2	71	82	13	248	15	23	16	45	1.85
4698--4967	105	2.6	109	91	7	434	14	22	17	45	1.84
4720--4953	72	3.3	72	80	10	288	14	21	17	46	1.84
4698--4967	53	5.1	52	89	8	406	14	22	17	45	1.84
7249--7273	12	2.1	12	100	0	50	0	28	0	72	0.86
8187--8415	20	11.4	20	85	1	235	19	17	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8383--8480	21	4.8	20	75	10	81	21	19	21	37	1.94
8383--8481	42	2.4	43	77	11	100	21	19	22	37	1.94
9843--9882	21	2.0	21	85	5	55	37	7	5	50	1.53
10186--10308	50	2.5	50	81	6	144	14	34	28	21	1.93
10603--10816	111	1.9	111	92	1	358	36	7	11	44	1.69
16500--16597	50	2.0	50	83	0	124	21	28	33	16	1.95
16777--16821	20	2.2	20	92	0	72	20	4	22	53	1.63
17295--17523	20	11.4	20	77	14	170	39	22	15	22	1.92
17270--17421	60	2.5	59	79	12	191	40	21	15	21	1.90
17719--17757	16	2.6	15	84	11	53	28	5	0	66	1.12
20775--20810	18	2.0	18	94	0	63	55	25	2	16	1.55
21218--21251	14	2.4	14	100	0	68	47	20	0	32	1.51
22630--22748	21	5.7	21	81	6	98	26	20	33	20	1.97
22630--22723	42	2.2	42	84	3	118	25	21	34	19	1.96
22654--22752	42	2.4	42	85	0	135	25	19	35	20	1.95
23065--23204	63	2.2	63	78	6	158	30	35	13	21	1.92
24920--24957	20	1.9	20	94	0	67	50	21	18	10	1.76
25537--25712	20	8.9	20	74	6	151	19	13	22	44	1.86
25537--25712	40	4.4	40	76	4	167	19	13	22	44	1.86
25547--25732	99	1.9	100	80	5	225	21	13	23	41	1.88
25721--25769	19	2.5	19	86	3	62	20	12	32	34	1.90
26262--26305	23	1.9	24	86	9	65	47	4	2	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26418--26482	34	1.9	34	83	0	85	12	9	20	58	1.61
29102--29135	16	2.1	16	88	0	50	52	5	2	38	1.41
30719--31158	136	3.2	136	94	1	742	24	21	18	35	1.96
31993--32075	20	4.2	20	80	16	75	9	13	0	77	1.00
32017--32071	18	3.3	17	80	19	71	9	12	0	78	0.97
32019--32087	24	2.9	24	79	12	79	8	13	1	76	1.07
32005--32071	32	2.1	31	88	2	98	8	13	0	77	0.98
32016--32088	32	2.3	32	83	4	94	8	15	1	75	1.10
43972--44005	17	2.0	17	88	0	50	55	5	2	35	1.39
50922--50954	11	3.0	11	90	0	57	0	15	63	21	1.30
51116--51154	9	4.4	9	90	6	62	79	0	2	17	0.84
51127--51186	7	8.0	7	77	15	50	68	0	0	31	0.90
51117--51154	17	2.2	17	95	0	67	78	0	2	18	0.86
51183--51212	2	15.5	2	93	6	53	50	0	0	50	1.00
52092--52204	60	1.9	60	85	7	158	34	14	18	32	1.91
54799--54860	29	2.1	29	90	0	97	32	11	17	38	1.85
54753--54919	88	1.9	89	85	6	232	34	13	16	34	1.89
55958--55982	6	4.2	6	100	0	50	84	0	0	16	0.63
58087--58168	31	2.6	31	80	0	101	51	6	3	39	1.44
63242--63302	29	2.1	29	84	6	79	47	1	0	50	1.10
63460--63504	23	2.0	23	86	0	63	53	2	2	42	1.25
63849--63921	14	5.1	15	78	8	62	36	16	6	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63851--63909	14	4.1	14	80	4	64	35	16	5	42	1.71
64993--65030	2	19.0	2	100	0	76	50	0	0	50	1.00
67912--67954	21	2.0	21	86	0	59	30	4	0	65	1.13
71246--71297	18	2.9	18	77	2	61	53	7	0	38	1.30

Tables:   1

The End!