genome.fa.s4173.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004173.1 Hibiscus syriacus cultivar Beakdansim tig00009128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100793

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730--776	17	2.6	19	87	12	73	27	21	23	27	1.99
4084--4146	27	2.3	27	80	5	63	57	14	1	26	1.47
6959--6988	15	2.0	15	93	0	51	43	20	3	33	1.68
15946--15985	21	2.0	20	85	5	53	45	2	0	52	1.14
18379--18405	2	13.5	2	100	0	54	48	0	0	51	1.00
22827--22863	15	2.4	16	79	20	51	64	0	29	5	1.15
25094--25196	37	2.8	37	86	2	136	40	15	14	29	1.87
25651--25727	2	39.5	2	92	5	131	48	0	1	50	1.09
25763--25813	5	9.8	5	83	8	66	39	3	0	56	1.18
25763--25858	11	8.6	11	72	16	56	31	4	1	63	1.20
26016--26067	19	2.6	21	80	17	58	25	1	0	73	0.94
26023--26080	21	2.8	20	76	19	57	27	3	0	68	1.05
27295--27332	20	1.9	20	89	10	60	7	26	0	65	1.19
31685--31749	29	2.3	28	82	10	80	30	1	1	66	1.10
31660--31749	33	2.8	33	81	9	105	31	3	1	64	1.17
31910--31967	28	2.1	27	81	9	64	27	3	0	68	1.05
31826--31970	22	6.6	21	69	26	63	28	4	1	65	1.19
32041--32091	5	10.2	5	77	8	50	21	7	0	70	1.12
32041--32091	15	3.4	15	78	5	59	21	7	0	70	1.12
32958--33109	46	3.3	46	99	0	295	30	23	21	24	1.99
35300--35339	21	2.0	21	90	5	64	32	22	7	37	1.82
35805--35845	9	4.2	10	85	14	59	60	0	29	9	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35804--35837	17	1.9	18	94	5	61	58	0	29	11	1.33
40782--40836	21	2.7	20	85	2	65	27	23	12	36	1.91
40888--40928	21	2.0	21	85	0	55	24	31	14	29	1.95
41994--42121	60	2.1	60	92	2	213	27	15	15	41	1.88
45162--45206	18	2.5	18	96	0	81	22	31	13	33	1.92
47533--47596	31	2.1	31	100	0	128	15	28	18	37	1.92
48762--48800	18	2.2	18	90	4	62	64	2	2	30	1.21
48842--48872	10	3.1	10	95	0	53	35	0	32	32	1.58
50047--50120	37	2.0	37	86	0	103	17	31	14	36	1.90
52384--52417	13	2.8	12	82	8	50	50	0	8	41	1.34
52520--52612	32	3.0	32	79	3	91	26	31	25	16	1.96
53749--53799	19	2.6	20	90	3	77	43	5	15	35	1.71
56160--56252	21	4.6	20	77	4	87	38	17	24	19	1.92
56177--56252	21	3.7	20	78	5	89	39	18	25	17	1.91
56157--56252	41	2.3	41	96	0	174	39	16	23	19	1.92
56179--56313	41	3.3	41	81	6	123	37	20	21	20	1.94
56241--56335	20	4.7	20	80	2	91	34	24	17	23	1.96
58163--58207	18	2.5	18	81	0	54	26	42	13	17	1.86
58680--58746	20	3.4	20	81	2	73	38	23	22	14	1.92
58735--58824	14	5.9	14	73	19	81	47	25	18	7	1.75
58719--58829	32	3.4	32	94	1	195	46	24	19	9	1.78
58836--58989	19	8.6	19	75	14	123	12	20	24	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58858--58915	14	3.9	14	79	16	71	8	17	25	48	1.75
58839--58931	32	2.8	33	95	3	170	10	19	23	46	1.81
58916--58970	20	2.8	19	89	5	83	16	25	23	34	1.95
60836--60871	14	2.6	14	90	0	54	30	0	22	47	1.52
60988--61055	19	3.8	19	85	14	101	47	17	22	13	1.82
61081--61130	20	2.5	20	96	0	91	22	24	20	34	1.97
61498--61533	14	2.6	14	90	0	54	30	0	22	47	1.52
62778--62836	24	2.5	24	82	0	73	28	16	18	35	1.93
63011--63035	12	2.1	12	100	0	50	72	0	28	0	0.86
65327--65424	19	5.7	19	69	22	90	43	19	24	12	1.85
65327--65420	33	2.8	33	98	0	179	43	19	24	12	1.85
65420--65458	20	2.0	20	85	5	53	15	17	20	46	1.84
65603--65639	14	2.6	14	86	0	56	45	27	0	27	1.54
66996--67062	21	3.2	21	68	4	55	19	20	35	23	1.95
69116--69274	19	8.8	19	70	15	88	44	18	23	13	1.86
69141--69236	33	2.9	33	89	3	140	40	19	25	14	1.90
69211--69279	19	3.7	19	94	1	113	46	21	20	11	1.82
69275--69341	19	3.5	19	83	2	80	10	16	23	49	1.77
69862--69955	20	4.7	20	80	2	89	23	18	24	34	1.96
69883--70017	41	3.3	41	81	4	130	20	21	20	37	1.94
69944--70036	20	4.6	20	78	4	96	18	24	18	38	1.92
69944--70039	41	2.3	41	98	0	183	18	23	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78789--78911	66	1.9	63	81	9	149	35	18	19	26	1.95
79506--79557	22	2.4	22	83	0	77	17	21	30	30	1.96
86434--86490	22	2.6	22	94	0	96	17	28	28	26	1.98
92342--92382	3	13.7	3	94	0	73	29	0	2	68	1.03
97160--97213	22	2.5	22	78	0	63	40	24	7	27	1.81

Tables:   1

The End!