Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004177.1 Hibiscus syriacus cultivar Beakdansim tig00009134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51530
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:1297 original size:24 final size:24
Alignment explanation
Indices: 1270--1333 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
1260 ACCTTTGGGT
1270 ACTCCTGTATCAGTGTAAATATAC
1 ACTCCTGTATCAGTGTAAATATAC
* * * *
1294 ACTCCTGAATCAGTGCAATTATGC
1 ACTCCTGTATCAGTGTAAATATAC
**
1318 ACTTTTGTATCAGTGT
1 ACTCCTGTATCAGTGT
1334 CTTCGTGCAC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (24 bp):
ACTCCTGTATCAGTGTAAATATAC
Found at i:1366 original size:24 final size:24
Alignment explanation
Indices: 1278--1368 Score: 78
Period size: 24 Copynumber: 3.8 Consensus size: 24
1268 GTACTCCTGT
* * * *
1278 ATCAGTGTAAATATACACTCCTGA
1 ATCAGTGCAATTATGCACTTCTGA
* *
1302 ATCAGTGCAATTATGCACTTTTGT
1 ATCAGTGCAATTATGCACTTCTGA
* *
1326 ATCAGTGTC--TTCGTGCACTTCTAA
1 ATCAGTG-CAATT-ATGCACTTCTGA
1350 ATCAGTGCAATTATGCACT
1 ATCAGTGCAATTATGCACT
1369 CCTGTATTAA
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
23 3 0.06
24 46 0.88
25 3 0.06
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (24 bp):
ATCAGTGCAATTATGCACTTCTGA
Found at i:2945 original size:21 final size:21
Alignment explanation
Indices: 2921--2963 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
2911 CGATGATAAC
2921 ATAATCGGGTAATTACTGGAA
1 ATAATCGGGTAATTACTGGAA
2942 ATAATCGGGTAATTACTGGAA
1 ATAATCGGGTAATTACTGGAA
2963 A
1 A
2964 CATTACCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (21 bp):
ATAATCGGGTAATTACTGGAA
Found at i:5196 original size:23 final size:23
Alignment explanation
Indices: 5131--5236 Score: 89
Period size: 23 Copynumber: 4.7 Consensus size: 23
5121 CCACTCGTAA
5131 TTTGCACCGAAGTGCCACATA--
1 TTTGCACCGAAGTGCCACATAGG
*
5152 ATTGTC-CCGAAG-GACCACATAGG
1 TTTG-CACCGAAGTG-CCACATAGG
*
5175 TTTGCACCGAAGTGCCATATAGAG
1 TTTGCACCGAAGTGCCACATAG-G
* *
5199 -TTGTACC-AAGTGCCATATAGG
1 TTTGCACCGAAGTGCCACATAGG
* *
5220 GTTGTACCGAAGTGCCA
1 TTTGCACCGAAGTGCCA
5237 ATAATTGTCC
Statistics
Matches: 72, Mismatches: 4, Indels: 16
0.78 0.04 0.17
Matches are distributed among these distances:
20 1 0.01
21 17 0.24
22 22 0.31
23 30 0.42
24 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (23 bp):
TTTGCACCGAAGTGCCACATAGG
Found at i:5234 original size:45 final size:44
Alignment explanation
Indices: 5132--5260 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 44
5122 CACTCGTAAT
* *
5132 TTGCACCGAAGTGCCACATAATTGTCCCGAAGGACCACATAGGT
1 TTGCACCGAAGTGCCACATAATTGTACCGAAGGACCACATAGGG
* *
5176 TTGCACCGAAGTGCCATATAGAGTTGTACC-AAGTG-CCATATAGGG
1 TTGCACCGAAGTGCCACATA-A-TTGTACCGAAG-GACCACATAGGG
* * * *
5221 TTGTACCGAAGTGCCA-ATAATTGTCCCAAATGACCACATA
1 TTGCACCGAAGTGCCACATAATTGTACCGAAGGACCACATA
5261 AAACCCTCGA
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
42 7 0.10
43 9 0.12
44 22 0.31
45 27 0.38
46 7 0.10
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (44 bp):
TTGCACCGAAGTGCCACATAATTGTACCGAAGGACCACATAGGG
Found at i:10475 original size:21 final size:21
Alignment explanation
Indices: 10449--10507 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 21
10439 ATAATTTATA
*
10449 CCGAAGTGCCACATAA-TTGTT
1 CCGAAGTGCCACATAAGTT-TG
*
10470 CCGAAGTACCACATAAGTTTG
1 CCGAAGTGCCACATAAGTTTG
10491 CACTGAAGTGCCACATA
1 C-C-GAAGTGCCACATA
10508 GGGTTGCACT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 17 0.53
22 3 0.09
23 12 0.38
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (21 bp):
CCGAAGTGCCACATAAGTTTG
Found at i:10504 original size:23 final size:23
Alignment explanation
Indices: 10451--10528 Score: 81
Period size: 23 Copynumber: 3.5 Consensus size: 23
10441 AATTTATACC
*
10451 GAAGTGCCACATAA-TTGTTC-C-
1 GAAGTGCCACATAAGTT-TGCACT
*
10472 GAAGTACCACATAAGTTTGCACT
1 GAAGTGCCACATAAGTTTGCACT
* *
10495 GAAGTGCCACATAGGGTTGCACT
1 GAAGTGCCACATAAGTTTGCACT
*
10518 AAAGTGCCACA
1 GAAGTGCCACA
10529 CAATTGTCCC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
21 15 0.31
22 3 0.06
23 30 0.62
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (23 bp):
GAAGTGCCACATAAGTTTGCACT
Found at i:10554 original size:21 final size:21
Alignment explanation
Indices: 10524--10565 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
10514 CACTAAAGTG
*
10524 CCACACAATTGTCCCGAAGGA
1 CCACACAATTATCCCGAAGGA
*
10545 CCACATAATTATCCCGAAGGA
1 CCACACAATTATCCCGAAGGA
10566 TAACATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.17
Consensus pattern (21 bp):
CCACACAATTATCCCGAAGGA
Found at i:10571 original size:21 final size:21
Alignment explanation
Indices: 10530--10573 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
10520 AGTGCCACAC
* *
10530 AATTGTCCCGAAGGACCACAT
1 AATTATCCCGAAGGACAACAT
*
10551 AATTATCCCGAAGGATAACAT
1 AATTATCCCGAAGGACAACAT
10572 AA
1 AA
10574 AACCCTCAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.23, G:0.16, T:0.20
Consensus pattern (21 bp):
AATTATCCCGAAGGACAACAT
Found at i:13538 original size:20 final size:22
Alignment explanation
Indices: 13512--13569 Score: 70
Period size: 20 Copynumber: 2.8 Consensus size: 22
13502 CATTCTTTGG
13512 GGTATCGATACTACCCTT-ACA
1 GGTATCGATACTACCCTTAACA
*
13533 -GTATCGATAC--CTCTTCAACA
1 GGTATCGATACTACCCTT-AACA
13553 GGTATCGATACTACCCT
1 GGTATCGATACTACCCT
13570 CAAATTTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
18 4 0.13
20 13 0.43
21 10 0.33
23 3 0.10
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (22 bp):
GGTATCGATACTACCCTTAACA
Found at i:18778 original size:200 final size:199
Alignment explanation
Indices: 18435--19017 Score: 932
Period size: 200 Copynumber: 2.9 Consensus size: 199
18425 CATATCGATG
* * * *
18435 CTATTTAAAAAAATATTGATACATTTTGTTTACCTATTCTCTCATTAAACCAATATATTTTTACC
1 CTATTTAAAAAAGTATCGATACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTTTTA-C
*
18500 GGTTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTATGAGGATCGATACT
65 GGTTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACT
* * *
18565 TATAATAAATGTATCGATACTTAATGTGTGCATCTCGTTTGGCATTCATACTGGATAAAATGTAT
130 TATAATAAATGTATCGATACTTTATGTGTGCATCTCGTTTGGCATTCATACTGGACAAAAAGTAT
18630 CCATA
195 CCATA
* *
18635 CTATTTAAAAGAGTATCGATACATTATGTTTACCTATTCTCTCATTAAACCGGTATATTTTTATC
1 CTATTTAAAAAAGTATCGATACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTTTTA-C
*
18700 GGTTACATTGCAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACT
65 GGTTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACT
* * *
18765 TATAACAAATGTATCGATAATTTATGTGTGCATGTCGTTTGGCATTCATACTGGACAAAAAGTAT
130 TATAATAAATGTATCGATACTTTATGTGTGCATCTCGTTTGGCATTCATACTGGACAAAAAGTAT
* *
18830 CGATG
195 CCATA
* *
18835 CTATTTAAAAAAGTATCGATACATTATGTTAACCTATTCTCCCATTAAACCAGTATATTTTTACT
1 CTATTTAAAAAAGTATCGATACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTTTTAC-
* * *
18900 GGTTACATTGTAGATTTACCTATTACTTTATAATAATCAGTTTCGATGTTCTGAGGAACGATACT
65 GGTTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACT
* *
18965 TATAATAAATGTATCGATACTTTATGCGTGCATCTCGTTTGGAATTCATACTG
130 TATAATAAATGTATCGATACTTTATGTGTGCATCTCGTTTGGCATTCATACTG
19018 TCGAGATTAC
Statistics
Matches: 352, Mismatches: 30, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
199 1 0.00
200 351 1.00
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (199 bp):
CTATTTAAAAAAGTATCGATACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTTTTACG
GTTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
ATAATAAATGTATCGATACTTTATGTGTGCATCTCGTTTGGCATTCATACTGGACAAAAAGTATC
CATA
Found at i:19294 original size:15 final size:15
Alignment explanation
Indices: 19253--19304 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
19243 TCTCCATCAC
*
19253 AAAAAAT-TTTGAAA
1 AAAAAATGTTCGAAA
*
19267 AAAATAGTAGTTCGAAA
1 AAAA-AAT-GTTCGAAA
19284 AAAAAATGTTCGAAA
1 AAAAAATGTTCGAAA
19299 GAAAAA
1 -AAAAA
19305 GAAAAAAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 4 0.13
15 10 0.32
16 7 0.23
17 10 0.32
ACGTcount: A:0.62, C:0.04, G:0.13, T:0.21
Consensus pattern (15 bp):
AAAAAATGTTCGAAA
Found at i:23206 original size:13 final size:13
Alignment explanation
Indices: 23184--23216 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
23174 TAACCACCAA
23184 TTTC-CTTGGAAT
1 TTTCGCTTGGAAT
23196 TTTCGCTTGGAAT
1 TTTCGCTTGGAAT
23209 TTTCGCTT
1 TTTCGCTT
23217 TTTCAACCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.12, C:0.18, G:0.18, T:0.52
Consensus pattern (13 bp):
TTTCGCTTGGAAT
Found at i:26323 original size:183 final size:183
Alignment explanation
Indices: 26012--26657 Score: 1008
Period size: 183 Copynumber: 3.5 Consensus size: 183
26002 TAAAGTATCC
* *
26012 ATACCTTCAACATATCCGATAGCGCTTTACCGGTTTTGTCATAATGAAACCAATTTTGTCATATT
1 ATACCTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGATTTTGTCATATT
*
26077 TTTACATGTTATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGCGCTAT
66 TTTACATGATATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGCGCTAT
26142 TATTGTTTTTCTTTTAAATTCTAAAAGTATCGATACTTATTTGAATGGAATCG
131 TATTGTTTTTCTTTTAAATTCTAAAAGTATCGATACTTATTTGAATGGAATCG
* * * *
26195 ATGCCTTCAACATATCCGGTAGCGCTTTATCGGTTTTGTCATAATAAAACCGGTTTTGTCATATT
1 ATACCTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGATTTTGTCATATT
* *
26260 TTTACATGTTATATTGTTACGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGCGCTAT
66 TTTACATGATATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGCGCTAT
* * *
26325 TATTGTTTTTCTTTTAAATT-TCAAAAGTATCAATACTTATTTGAATTGTATCG
131 TATTGTTTTTCTTTTAAATTCT-AAAAGTATCGATACTTATTTGAATGGAATCG
* * * * * * *
26378 ATACCTTAAACATATCCGGTATC-TTTTCACTGGTTTTGTCATATTGAACCCGATTATGTCATAT
1 ATACCTTCAACATATCCGGTAGCGCTTT-ACCGGTTTTGTCATAATGAAACCGATTTTGTCATAT
* *
26442 TTTTACCTGATATATTGTTATTTATCGATACATGTTTATAAAGTATCGATACTTTATAGGCGCTA
65 TTTTACATGATATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGCGCTA
*
26507 TTATTGTTTTTCTTTTAAATTCTAAAAGTATCGATAGTTATTTGAATGGAATCG
130 TTATTGTTTTTCTTTTAAATTCTAAAAGTATCGATACTTATTTGAATGGAATCG
* * * * *
26561 ATACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATATTGAACCCGGTTTTGTCATGTT
1 ATACCTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGATTTTGTCATATT
*
26626 TTTACCTGATATATTGTTATGTATCGATACAT
66 TTTACATGATATATTGTTATGTATCGATACAT
26658 ATTTGAATGG
Statistics
Matches: 421, Mismatches: 38, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
182 4 0.01
183 413 0.98
184 4 0.01
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (183 bp):
ATACCTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGATTTTGTCATATT
TTTACATGATATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGCGCTAT
TATTGTTTTTCTTTTAAATTCTAAAAGTATCGATACTTATTTGAATGGAATCG
Found at i:32260 original size:30 final size:30
Alignment explanation
Indices: 32189--32260 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
32179 AGATTCTATT
* * *
32189 TTTTTACTTTTTTATTCCTTTAAATATATG
1 TTTTTACTATTTTAATCCCTTAAATATATG
* *
32219 -TTTTGCTATTTTAATCCCTTAAATGTATG
1 TTTTTACTATTTTAATCCCTTAAATATATG
32248 TTTTTACTATTTT
1 TTTTTACTATTTT
32261 GGACCTTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 24 0.69
30 11 0.31
ACGTcount: A:0.22, C:0.11, G:0.06, T:0.61
Consensus pattern (30 bp):
TTTTTACTATTTTAATCCCTTAAATATATG
Found at i:32300 original size:29 final size:29
Alignment explanation
Indices: 32204--32344 Score: 70
Period size: 30 Copynumber: 4.7 Consensus size: 29
32194 ACTTTTTTAT
* * **
32204 TCCTTTAAATATATG-TTTTGCTATTTTAA
1 TCCTTTAAAT-TTTGTTTTTGTTATTTTCG
* * ** *
32233 TCCCTTAAATGTATGTTTTTACTATTTTGG
1 TCCTTTAAAT-TTTGTTTTTGTTATTTTCG
*
32263 ACCTTTTAAATTTCTGTTTTTGTT-TTTTCG
1 TCC-TTTAAATTT-TGTTTTTGTTATTTTCG
* * *
32293 TCCTTTAAGTTTTCGTATTTGTTATTTTGG
1 TCCTTTAAATTTT-GTTTTTGTTATTTTCG
* *
32323 TTCTTTAACTTTATGTATTTTG
1 TCCTTTAAATTT-TGT-TTTTG
32345 ATAACTCCAT
Statistics
Matches: 87, Mismatches: 18, Indels: 12
0.74 0.15 0.10
Matches are distributed among these distances:
28 1 0.01
29 29 0.33
30 38 0.44
31 19 0.22
ACGTcount: A:0.18, C:0.11, G:0.11, T:0.59
Consensus pattern (29 bp):
TCCTTTAAATTTTGTTTTTGTTATTTTCG
Found at i:32341 original size:30 final size:28
Alignment explanation
Indices: 32267--32342 Score: 71
Period size: 30 Copynumber: 2.6 Consensus size: 28
32257 TTTTGGACCT
*
32267 TTTAAATTTCTGTTTTTGTTTTTTCGTCC
1 TTTAAATTT-TGTATTTGTTTTTTCGTCC
* * *
32296 TTTAAGTTTTCGTATTTGTTATTTTGGTTC
1 TTTAAATTTT-GTATTTGTT-TTTTCGTCC
*
32326 TTTAACTTTATGTATTT
1 TTTAAATTT-TGTATTT
32343 TGATAACTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 16 0.41
30 21 0.54
31 1 0.03
ACGTcount: A:0.14, C:0.09, G:0.12, T:0.64
Consensus pattern (28 bp):
TTTAAATTTTGTATTTGTTTTTTCGTCC
Found at i:35373 original size:20 final size:20
Alignment explanation
Indices: 35333--35371 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
35323 CATTGCAGGA
*
35333 ATTTATGGCTTCGACAAAAG
1 ATTTATGGCTTCAACAAAAG
35353 ATTTCATGGCTTCAACAAA
1 ATTT-ATGGCTTCAACAAA
35372 GACCTTGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (20 bp):
ATTTATGGCTTCAACAAAAG
Found at i:50052 original size:32 final size:32
Alignment explanation
Indices: 50005--50067 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
49995 AGAAACAATA
* *
50005 AATGATGGGGTATCTTTG-GAGATTTAACATCG
1 AATGATGGGGCATCTTTGAG-GATTCAACATCG
*
50037 AATGTTGGGGCATCTTTGAGGATTCAACATC
1 AATGATGGGGCATCTTTGAGGATTCAACATC
50068 CTGATACGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (32 bp):
AATGATGGGGCATCTTTGAGGATTCAACATCG
Found at i:50427 original size:30 final size:32
Alignment explanation
Indices: 50373--50431 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 32
50363 AAAACGCAAA
*
50373 ATCTTTGAGTCTGTTTCTCTTGAAACAAAACC
1 ATCTTTGAGTCTATTTCTCTTGAAACAAAACC
50405 ATCTTTGAGTC-ATTTC-CTTGAAACAAA
1 ATCTTTGAGTCTATTTCTCTTGAAACAAA
50432 TTTATTCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 11 0.42
31 4 0.15
32 11 0.42
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (32 bp):
ATCTTTGAGTCTATTTCTCTTGAAACAAAACC
Found at i:51055 original size:3 final size:3
Alignment explanation
Indices: 51049--51084 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
51039 TAATATAATA
51049 TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
51085 TCAACTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Done.