genome.fa.s4178.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004178.1 Hibiscus syriacus cultivar Beakdansim tig00009135_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65699

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2346--2751	54	7.6	54	87	1	564	35	21	16	26	1.95
2346--2748	107	3.8	108	88	1	585	35	20	16	27	1.94
2346--2751	161	2.5	161	91	0	652	35	21	16	26	1.95
3091--3287	94	2.1	94	88	1	288	26	23	15	34	1.95
9351--9804	54	8.5	54	87	1	619	33	19	17	29	1.95
10156--10352	94	2.1	94	89	0	295	28	25	14	31	1.94
21103--21140	18	2.1	18	95	0	67	39	18	15	26	1.91
28749--28887	35	3.9	35	83	3	181	20	22	17	38	1.93
28749--28892	71	2.0	71	90	0	225	20	22	17	40	1.91
31128--31204	36	2.2	36	90	2	120	32	24	23	19	1.97
31139--31214	35	2.1	36	85	2	100	35	25	22	17	1.95
31361--31405	21	2.1	21	100	0	90	15	0	42	42	1.47
33221--33364	60	2.4	61	76	11	154	35	18	15	31	1.91
36244--36296	21	2.5	21	81	6	72	20	26	18	33	1.96
36286--36337	21	2.5	21	81	3	61	38	19	25	17	1.93
36323--36400	41	1.9	41	94	0	138	37	25	17	19	1.94
36326--36420	20	4.7	20	83	7	111	33	26	18	21	1.96
36929--36966	20	1.9	20	88	0	58	13	15	21	50	1.78
38285--38332	18	2.7	18	93	0	87	27	45	12	14	1.81
38867--38933	20	3.4	20	78	10	66	38	25	20	14	1.91
38922--38980	14	3.9	14	76	20	64	49	23	16	10	1.77
38906--38997	33	2.8	33	96	0	166	47	22	17	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38906--39002	19	5.6	19	71	22	88	46	22	18	12	1.82
39019--39088	33	2.1	33	94	0	122	15	18	18	47	1.83
39030--39111	19	4.5	19	66	16	57	15	20	18	45	1.86
39482--39550	21	3.3	20	74	6	66	24	40	15	18	1.90
39472--39562	41	2.2	42	88	2	139	21	41	15	20	1.89
40975--41010	14	2.6	14	90	0	54	30	0	22	47	1.52
41137--41190	14	3.5	14	75	22	54	46	20	22	11	1.82
41150--41195	14	2.8	17	75	25	53	45	19	21	13	1.84
41207--41361	20	7.8	20	91	0	175	18	25	21	34	1.96
41207--41358	40	3.8	40	92	0	214	18	25	21	34	1.96
41199--41358	60	2.7	60	89	0	221	18	24	20	36	1.94
43822--43875	24	2.2	24	86	0	72	38	20	18	22	1.93
44629--44768	41	3.4	42	84	4	153	22	20	26	30	1.98
44614--44748	20	6.7	20	86	5	155	22	19	26	31	1.98
44600--44788	101	1.9	100	80	4	218	21	20	24	33	1.97
44777--44829	21	2.5	22	81	6	74	33	18	26	20	1.96
57137--57326	84	2.3	84	84	9	228	31	2	12	53	1.52
57439--57495	26	2.2	26	100	0	114	21	15	19	43	1.87
65190--65236	15	3.2	15	72	3	51	46	4	6	42	1.48
65269--65610	21	16.5	21	81	8	389	48	11	0	40	1.42
65271--65610	22	16.4	22	81	10	414	48	11	0	39	1.42

Tables:   1

The End!