genome.fa.s4179.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004179.1 Hibiscus syriacus cultivar Beakdansim tig00009138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125193

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399--437	19	2.1	19	95	0	69	46	15	17	20	1.84
478--529	20	2.6	20	90	6	79	30	11	17	40	1.85
19786--19841	23	2.4	23	81	0	67	48	14	21	16	1.81
19852--20286	221	1.9	224	82	5	531	53	13	16	17	1.73
20596--20656	25	2.5	25	89	2	88	29	1	3	65	1.18
28748--28789	22	1.9	22	85	9	59	9	11	9	69	1.38
32762--32826	13	5.2	12	73	12	60	81	0	15	3	0.81
32754--32826	23	3.5	20	79	18	71	80	0	15	4	0.85
33354--33425	25	2.9	25	83	2	101	37	13	1	47	1.52
34269--34443	90	1.9	90	88	2	262	33	23	14	29	1.94
34142--34565	212	2.0	212	83	2	539	33	22	15	28	1.94
34356--34543	61	3.1	61	70	6	173	34	23	13	27	1.93
34384--34571	61	3.1	61	70	11	177	36	21	14	27	1.92
34594--34917	125	2.6	125	81	5	361	33	20	22	24	1.97
35533--35621	46	1.9	46	95	0	160	26	17	11	43	1.83
38205--38232	7	4.0	7	100	0	56	0	57	0	42	0.99
41727--41760	2	17.0	2	100	0	68	50	0	0	50	1.00
45022--45101	37	2.2	37	82	6	99	43	0	2	53	1.14
47600--47654	22	2.3	23	78	12	67	45	18	5	30	1.72
49069--49100	4	8.0	4	100	0	64	75	0	0	25	0.81
49922--49988	20	3.3	20	89	4	73	32	20	19	26	1.97
49918--50030	40	2.8	40	83	2	120	31	23	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49942--50049	20	5.4	20	88	4	128	29	25	17	27	1.97
50870--50923	24	2.2	24	90	0	81	20	18	18	42	1.89
51120--51151	14	2.4	13	90	10	55	50	25	15	9	1.74
53234--53503	140	1.9	140	98	0	522	28	13	15	42	1.85
53474--53772	20	15.9	20	72	13	231	35	21	17	26	1.95
53482--53636	54	2.9	54	90	0	238	35	23	16	23	1.95
53536--53811	94	2.9	93	85	5	333	35	20	18	25	1.95
53474--53741	74	3.6	74	72	6	238	35	22	16	25	1.94
53821--53868	20	2.4	20	82	6	62	12	16	29	41	1.85
53967--54028	14	4.3	14	77	6	61	46	14	0	38	1.45
55444--55488	21	2.3	18	81	11	54	24	11	42	22	1.86
56006--56080	20	3.8	20	89	0	105	40	22	17	20	1.92
58038--58094	20	2.8	20	91	0	87	50	22	15	10	1.74
58708--58845	20	6.9	20	85	3	170	26	21	23	28	1.99
58708--58845	60	2.3	60	86	2	188	26	21	23	28	1.99
60424--60493	27	2.7	26	82	8	72	51	5	1	41	1.34
60458--60511	26	2.0	27	82	10	67	53	5	0	40	1.24
60502--60552	18	2.8	18	75	16	52	50	5	0	43	1.26
61851--61944	8	12.7	7	81	16	86	57	0	4	38	1.18
61851--61953	14	6.9	15	77	17	99	57	0	3	37	1.24
61851--61953	22	4.7	21	75	18	102	57	0	3	37	1.24
61851--61944	3	31.7	3	70	18	63	57	0	4	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62214--62267	20	2.7	20	88	0	72	31	22	20	25	1.98
62085--62490	119	3.4	119	92	0	661	33	19	15	32	1.93
62339--62379	20	2.0	20	85	0	55	29	19	24	26	1.98
63120--63204	22	3.8	22	90	1	134	47	8	11	32	1.70
63271--63440	57	3.0	57	91	1	272	31	22	7	38	1.82
65264--65313	24	2.1	24	85	7	66	60	16	2	22	1.46
75498--75547	24	2.1	24	85	7	66	60	16	2	22	1.46
82276--82383	26	4.1	26	85	8	91	54	5	0	38	1.30
82339--82385	14	3.5	14	71	11	53	59	4	0	36	1.17
82324--82388	26	2.5	26	97	0	121	56	3	0	40	1.15
83728--83807	8	9.8	8	76	20	60	57	1	2	38	1.20
83728--83798	8	9.7	7	77	22	67	57	0	2	39	1.13
83728--83798	16	4.7	16	83	11	80	57	0	2	39	1.13
83728--83807	22	3.7	21	83	11	99	57	1	2	38	1.20
83772--83806	14	2.5	14	85	0	52	62	2	2	31	1.24
84571--84685	57	2.0	58	86	1	160	48	32	1	17	1.57
85481--85603	42	2.9	42	78	7	131	34	17	21	26	1.96
85574--85637	32	2.0	32	84	6	85	28	14	18	39	1.90
85607--85743	43	3.2	43	78	5	134	36	14	21	27	1.93
101889--101922	15	2.3	15	89	0	50	29	8	2	58	1.43
102288--102344	21	2.7	21	77	0	60	36	22	15	24	1.94
106528--106591	27	2.3	27	81	5	65	54	15	1	28	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118477--118516	21	2.0	20	85	5	53	45	2	0	52	1.14

Tables:   1

The End!