genome.fa.s4180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004180.1 Hibiscus syriacus cultivar Beakdansim tig00009142_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61656

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2471--2582	35	3.2	35	85	1	143	30	3	36	29	1.74
5506--5545	21	1.9	21	89	0	62	85	0	12	2	0.71
25685--25736	21	2.6	21	90	6	81	36	11	5	46	1.64
27910--27953	22	2.0	22	100	0	88	27	13	27	31	1.94
28392--28434	20	2.2	20	83	4	52	44	4	13	37	1.65
31311--31423	36	3.2	36	92	1	174	32	36	3	27	1.74
31311--31409	13	8.3	11	71	23	67	31	36	3	29	1.73
31323--31462	36	4.1	33	83	9	97	30	36	2	30	1.72
35289--35401	36	3.2	36	92	1	174	32	36	3	27	1.74
35289--35387	13	8.3	11	71	23	67	31	36	3	29	1.73
35301--35440	36	4.1	33	83	9	97	30	36	2	30	1.72
37804--37836	15	2.1	16	88	5	50	42	0	33	24	1.55
40220--40279	30	2.0	31	90	3	95	30	8	8	53	1.60
42707--42758	21	2.6	21	90	6	81	34	13	5	46	1.67
43359--43409	19	2.6	20	84	3	68	41	5	11	41	1.66
43306--43886	302	1.9	301	98	0	1126	35	13	13	36	1.84
45422--45450	15	2.0	15	93	6	51	75	3	20	0	0.94
47893--47919	2	13.5	2	100	0	54	48	0	0	51	1.00
50039--50073	16	2.1	18	89	10	56	65	0	8	25	1.21
50084--50121	20	1.9	20	88	0	58	63	2	7	26	1.35
50651--50752	34	2.9	36	89	7	172	27	14	13	44	1.83
51298--51919	105	6.0	105	89	3	862	22	17	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52345--52411	29	2.3	26	76	20	62	29	17	8	43	1.80
52549--52883	65	4.9	67	75	10	254	39	11	20	29	1.87
52695--52903	36	6.0	35	75	14	191	40	14	19	25	1.89
52706--52817	37	3.1	36	79	13	122	41	15	19	23	1.89
52643--52905	138	1.9	138	88	1	402	40	13	19	26	1.89
52837--52937	36	2.8	36	82	7	109	40	17	20	20	1.91
52833--52953	35	3.4	35	73	14	113	38	15	19	25	1.92
53383--53418	18	2.0	18	88	0	54	41	30	8	19	1.81
54507--54559	16	3.4	15	82	15	63	1	11	7	79	1.01
54521--54567	16	2.9	16	80	0	58	0	10	8	80	0.89
58952--58986	16	2.1	18	89	10	56	65	0	8	25	1.21
59553--59654	34	2.9	35	91	5	170	27	14	13	44	1.83
60487--60525	18	2.2	18	85	0	51	23	0	10	66	1.22

Tables:   1

The End!