genome.fa.s4182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004182.1 Hibiscus syriacus cultivar Beakdansim tig00009148_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59811

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--69	18	3.8	18	86	0	93	18	26	33	21	1.97
216--262	14	3.4	14	85	2	60	34	0	29	36	1.58
5131--5288	45	3.5	45	90	4	257	43	13	22	20	1.86
5131--5308	45	4.0	45	77	11	152	44	11	21	21	1.84
9821--9857	3	12.3	3	88	0	56	32	0	2	64	1.07
9815--9853	18	2.2	18	95	0	69	33	2	2	61	1.23
11525--11560	2	18.5	2	94	5	65	50	0	0	50	1.00
14161--14226	19	3.4	19	81	8	62	81	3	9	6	0.95
14138--14229	27	3.4	26	82	5	94	78	2	13	6	1.04
15934--16021	36	2.3	39	80	9	101	34	18	7	39	1.80
16544--16586	15	2.9	15	85	0	59	32	4	13	48	1.63
17298--17477	64	2.8	65	77	6	197	26	20	14	38	1.91
17496--17560	28	2.3	28	86	5	87	24	13	12	49	1.77
17512--17575	28	2.3	28	80	0	83	28	18	12	40	1.87
17631--17856	93	2.4	93	86	2	301	26	31	17	24	1.97
18098--18144	3	15.7	3	90	0	67	34	0	2	63	1.06
18839--19032	76	2.6	77	91	4	315	20	26	31	21	1.98
19654--19689	17	2.1	17	94	0	63	63	25	0	11	1.27
21671--21731	20	2.9	21	87	7	79	18	26	34	21	1.96
27482--27688	75	2.7	75	89	3	310	20	25	31	22	1.98
29600--29681	2	41.0	2	100	0	164	50	0	0	50	1.00
37455--37502	4	12.0	4	100	0	96	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43453--43548	42	2.3	40	78	7	102	25	21	21	31	1.98
43769--44064	80	3.7	80	72	12	278	30	17	22	30	1.97
43862--43971	22	5.2	21	66	16	66	25	19	24	30	1.98
43878--43949	20	3.5	20	69	14	65	23	22	25	29	1.99
43767--44098	164	2.0	163	89	0	511	28	18	22	30	1.97
43849--43973	42	3.0	42	92	0	205	26	19	24	30	1.98
44019--44104	42	2.1	41	84	4	111	24	16	23	36	1.94
44476--44835	53	6.8	53	86	3	474	29	21	26	22	1.99
47112--47174	29	2.2	29	100	0	126	31	3	15	49	1.61
49334--49504	61	2.8	60	77	7	173	33	8	15	42	1.77
51327--51405	34	2.3	34	82	0	95	45	18	12	22	1.84
51384--51426	11	3.9	11	78	0	50	55	20	9	13	1.66
51383--51427	22	2.0	22	86	0	63	53	20	8	17	1.70
51790--51833	2	22.0	2	100	0	88	50	0	0	50	1.00
51968--52049	36	2.3	36	89	6	130	41	18	14	25	1.88
52112--52584	47	9.6	47	76	12	428	29	20	21	28	1.98
52057--52639	102	5.8	102	82	7	597	29	20	20	28	1.98
52112--52744	149	4.2	149	87	2	856	29	20	20	29	1.98
52457--52799	157	2.2	156	84	2	443	30	19	18	31	1.96
52589--52803	55	4.1	55	75	15	209	30	18	19	32	1.95
52614--52911	102	2.9	101	82	5	339	29	20	18	31	1.96
54492--54521	15	1.9	15	93	6	51	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55210--55309	34	3.0	33	77	5	103	43	21	13	23	1.87
55285--55333	23	2.1	23	100	0	98	38	18	16	26	1.91
56926--56951	10	2.6	10	100	0	52	38	7	30	23	1.83

Tables:   1

The End!