Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004183.1 Hibiscus syriacus cultivar Beakdansim tig00009150_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84469

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
794--827
11
3.2
11
83
8
52
38
8
32
20
1.84
5753--5779
14
1.9
14
100
0
54
22
40
0
37
1.54
15484--15537
22
2.5
22
90
0
81
29
18
25
25
1.98
17849--17925
35
2.2
35
88
0
109
35
2
36
25
1.70
26047--26095
13
3.8
12
80
17
53
2
20
0
77
0.87
26050--26113
19
3.3
20
83
12
73
3
17
3
76
1.04
29448--29491
19
2.3
19
84
11
63
2
15
4
77
1.04
29447--29494
26
1.9
24
87
8
69
2
14
6
77
1.06
29447--29491
6
7.2
6
82
7
54
2
15
4
77
1.02
32442--32502
29
2.1
28
82
14
72
72
3
14
9
1.24
32439--32504
31
2.2
32
79
17
79
72
3
15
9
1.21
46821--46879
6
10.0
6
80
10
52
1
16
1
79
0.89
54732--54809
40
2.0
40
97
0
147
30
21
16
30
1.96
55304--55359
28
2.1
25
83
9
67
8
16
16
58
1.61
58391--58441
19
2.6
20
87
3
68
45
5
13
35
1.68
60748--60789
21
2.0
22
85
4
59
59
0
19
21
1.38
62548--62659
47
2.5
44
82
5
127
32
21
7
39
1.80
62743--62826
40
2.1
40
84
0
105
25
23
23
27
2.00
64077--64142
29
2.3
29
82
7
80
33
24
4
37
1.76
67364--67393
8
3.8
8
100
0
60
40
23
0
36
1.55
69452--69563
47
2.5
46
86
5
149
31
19
8
40
1.83
70954--71017
29
2.2
30
82
2
76
31
25
4
39
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72277--72440
90
1.8
90
94
0
292
46
6
10
35
1.64
73308--73354
19
2.5
19
80
16
62
82
4
12
0
0.80
73308--73356
13
4.0
12
81
7
55
81
4
14
0
0.83

Tables:   1

The End!