genome.fa.s4185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004185.1 Hibiscus syriacus cultivar Beakdansim tig00009156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89805

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465--500	18	2.0	18	88	0	54	27	33	19	19	1.96
10506--10539	4	8.5	4	100	0	68	76	0	0	23	0.79
11285--11331	7	6.9	7	78	11	53	14	23	25	36	1.93
11294--11339	13	3.5	13	91	5	74	17	21	21	39	1.93
15126--15405	66	4.2	66	77	4	206	26	20	13	40	1.89
15142--15404	133	2.0	134	81	4	318	26	19	13	40	1.89
16779--16810	17	1.9	17	93	6	57	46	12	21	18	1.82
27943--27977	3	12.0	3	93	6	63	34	0	0	65	0.93
28174--28215	19	2.3	19	88	8	61	21	42	11	23	1.86
29513--29554	10	3.9	11	87	6	52	16	7	2	73	1.15
29579--29945	150	2.4	150	89	4	535	37	13	16	32	1.87
33324--33533	65	3.2	64	78	13	216	30	24	18	26	1.98
33505--33553	19	2.6	19	84	9	57	24	28	20	26	1.99
33373--33553	65	2.8	64	78	13	183	29	23	19	27	1.98
39266--39360	44	2.2	44	83	7	124	28	26	21	24	1.99
39285--39365	23	3.7	23	73	8	87	27	25	23	23	2.00
41888--42047	65	2.5	63	83	6	196	30	23	18	26	1.98
41989--42083	45	2.1	45	98	0	181	27	21	20	31	1.97
45518--45551	18	1.9	18	88	5	52	50	0	0	50	1.00
52954--52992	20	2.0	20	89	0	60	15	30	51	2	1.57
52963--53003	20	2.0	20	85	0	55	12	34	53	0	1.38
58954--59130	89	2.0	89	94	0	309	46	9	9	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61470--61532	28	2.3	28	86	2	83	19	11	9	60	1.57
61448--61613	86	1.9	87	82	7	212	21	13	7	57	1.62
61561--61642	30	2.8	29	78	7	76	19	17	8	54	1.67
63494--63554	32	1.9	32	90	6	97	14	13	11	60	1.59
66173--66197	12	2.1	12	100	0	50	44	0	8	48	1.32
66782--68069	4	323.8	4	97	2	2445	49	25	0	24	1.50
70967--71027	31	2.0	31	86	0	86	26	6	6	60	1.46
71696--71732	19	1.9	19	94	0	65	32	29	16	21	1.95
71822--71870	20	2.5	20	96	0	89	38	18	22	20	1.93
71839--71949	41	2.7	41	90	2	134	31	26	21	20	1.98
71859--71933	21	3.6	21	77	16	93	30	28	22	18	1.97
71880--72006	20	6.3	20	85	5	175	29	27	19	23	1.98
71839--71972	61	2.2	58	81	12	153	31	26	21	20	1.98
72823--72869	24	2.0	24	95	0	85	27	21	17	34	1.95
75143--75182	18	2.2	18	90	0	62	52	27	2	17	1.57
75355--75609	20	13.7	20	73	14	179	36	21	20	21	1.96
75352--75609	34	6.9	40	76	12	169	36	21	19	22	1.96
75468--75648	73	2.5	73	87	1	245	36	22	19	22	1.95
75759--75824	30	2.2	30	94	0	114	54	12	1	31	1.46
77197--77303	21	5.1	21	74	0	97	22	19	37	20	1.94
77199--77306	42	2.6	42	79	2	119	24	20	36	19	1.95
77792--77842	20	2.5	20	83	0	66	49	19	15	15	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77826--77889	33	1.9	33	93	0	110	39	21	21	17	1.93
78235--78314	22	3.6	22	93	0	133	21	20	40	18	1.92
78477--78582	20	5.2	20	80	6	124	22	20	27	29	1.99
78477--78603	61	2.1	61	90	0	200	21	21	27	29	1.98
78592--78644	20	2.7	20	93	0	88	22	20	16	39	1.92
78729--78763	18	1.9	18	94	0	61	22	17	31	28	1.96
79061--79105	20	2.3	20	88	3	65	40	24	24	11	1.87
79070--79133	30	2.2	30	85	2	85	42	23	25	9	1.84
88081--88118	10	3.9	10	93	3	60	50	0	50	0	1.00

Tables:   1

The End!