genome.fa.s4186.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004186.1 Hibiscus syriacus cultivar Beakdansim tig00009158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72248

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3594--3636	15	2.9	15	80	13	52	69	4	25	0	1.07
5843--5949	50	2.1	50	78	10	112	20	17	22	39	1.93
7327--7384	16	3.7	16	90	4	91	8	31	13	46	1.74
7368--7455	44	2.0	44	97	0	167	26	25	17	31	1.97
15673--15719	22	2.1	22	84	7	60	29	29	12	27	1.93
23082--23122	21	2.0	21	85	4	57	17	17	2	63	1.42
28331--28650	91	3.5	90	85	4	419	22	22	13	41	1.88
28331--28657	45	7.2	45	86	3	433	22	22	13	42	1.88
28331--28650	136	2.4	136	94	0	541	22	22	13	41	1.88
29129--29336	45	4.6	45	80	5	240	26	20	11	41	1.86
29806--30014	45	4.6	45	77	9	210	29	21	11	38	1.87
29806--30014	91	2.3	90	87	2	285	29	21	11	38	1.87
28448--30894	680	3.6	679	90	0	3860	32	19	9	37	1.85
30486--30694	45	4.6	45	82	3	276	24	22	12	40	1.88
32972--33236	45	5.9	45	87	4	365	23	22	12	41	1.88
32972--33236	89	2.9	89	86	5	354	23	22	12	41	1.88
32973--33233	134	1.9	134	88	3	391	23	22	12	40	1.89
33761--33799	21	1.9	19	90	10	60	33	20	10	35	1.86
35815--35866	17	3.1	17	88	0	77	36	15	5	42	1.71
38838--39157	91	3.5	90	85	4	419	22	22	13	41	1.88
38838--39164	45	7.2	45	86	3	433	22	22	13	42	1.88
38838--39157	136	2.4	136	94	0	541	22	22	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39636--39843	45	4.6	45	80	5	240	26	20	11	41	1.86
40313--40521	45	4.6	45	77	9	210	29	21	11	38	1.87
40313--40521	91	2.3	90	87	2	285	29	21	11	38	1.87
38955--41401	680	3.6	679	90	0	3869	32	19	9	37	1.85
40993--41201	45	4.6	45	82	3	276	24	22	12	40	1.88
43480--43745	45	5.9	45	89	1	381	23	22	12	41	1.88
44270--44308	21	1.9	19	90	10	60	33	20	10	35	1.86
46323--46374	17	3.1	17	88	0	77	36	15	5	42	1.71
50637--50689	24	2.1	24	86	6	70	18	11	1	67	1.30
52369--52417	21	2.3	21	96	0	89	40	26	18	14	1.89
68215--68271	26	2.1	27	80	6	62	22	14	7	56	1.62

Tables:   1

The End!