genome.fa.s4188.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004188.1 Hibiscus syriacus cultivar Beakdansim tig00009160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84254

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6804--6843	20	2.0	20	90	0	62	32	12	17	37	1.87
10332--10400	36	1.9	36	84	0	93	14	14	27	43	1.84
11824--11883	30	2.0	30	81	12	70	31	1	3	63	1.20
11856--11981	58	2.2	57	83	5	157	35	7	11	45	1.69
20317--20364	22	2.2	22	100	0	96	31	12	4	52	1.58
22026--22192	60	2.9	58	83	4	185	44	3	18	32	1.67
23044--23098	28	2.0	28	88	0	83	27	10	23	38	1.88
30139--30182	18	2.4	18	88	3	61	15	38	13	31	1.87
30722--30773	3	17.3	3	90	7	79	34	1	0	63	1.06
34569--34630	32	2.0	32	96	3	117	14	14	9	61	1.57
36048--36125	26	3.2	25	67	22	76	24	23	10	42	1.85
36063--36137	20	3.5	20	70	20	62	26	25	10	37	1.89
36745--36782	11	3.4	11	89	7	58	71	10	13	5	1.30
36754--36789	18	1.9	19	88	5	56	72	8	13	5	1.27
37957--37998	4	11.0	4	90	10	70	50	26	0	23	1.50
38473--38702	101	2.3	101	82	11	267	30	20	12	36	1.90
38653--38729	36	2.1	36	80	4	93	31	22	11	35	1.90
39015--39179	27	5.8	28	88	7	210	29	10	16	43	1.82
39023--39179	58	2.8	56	85	7	205	29	10	15	43	1.81
39228--39491	30	8.1	30	70	15	123	32	10	13	43	1.79
39132--39358	92	2.4	95	83	5	273	33	9	14	42	1.78
39249--39746	67	7.5	67	96	0	874	30	11	12	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39249--39954	134	5.4	134	84	8	877	30	12	12	44	1.78
39579--39692	30	3.6	30	68	23	88	31	12	12	43	1.79
39290--39807	67	7.8	65	89	4	250	30	11	12	44	1.79
39848--39974	66	1.9	65	87	1	182	33	14	10	42	1.79
39956--40035	40	2.0	40	100	0	160	30	22	12	35	1.91
40624--40700	28	2.6	28	80	15	86	25	16	11	45	1.82
40651--40719	28	2.5	28	80	0	84	27	17	11	43	1.83
40744--40845	40	2.5	41	81	12	120	25	30	18	25	1.98
40727--41223	135	3.7	134	90	2	698	25	30	18	25	1.98
41456--41551	28	3.3	28	81	12	97	27	16	11	44	1.82
41576--41677	40	2.5	41	81	12	120	25	30	18	25	1.98
41559--42054	134	3.7	134	90	3	698	25	31	18	24	1.98
42286--42381	28	3.3	28	81	12	97	27	16	11	44	1.82
42406--42507	40	2.5	40	79	7	116	25	29	18	26	1.98
40547--43015	832	3.0	832	99	0	4888	26	26	16	29	1.97
42389--42886	135	3.7	135	90	2	702	25	30	18	25	1.98
43085--43128	3	14.7	3	88	9	63	36	2	0	61	1.09
43091--43134	12	3.2	14	84	15	65	38	2	0	59	1.10
46265--46298	15	2.2	16	89	5	52	0	5	38	55	1.24
46318--46500	91	2.0	91	91	0	294	21	11	34	31	1.89
48846--48895	22	2.3	22	85	0	73	42	2	2	54	1.23
55581--55619	20	2.0	20	89	0	60	23	25	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55865--55941	21	3.7	21	92	1	120	23	16	31	28	1.96
55865--55957	41	2.3	41	84	3	116	25	16	30	27	1.96
59457--59516	21	2.9	21	89	0	102	36	31	13	18	1.89
59623--59653	14	2.2	14	100	0	62	25	25	12	35	1.92
59706--59783	38	2.1	37	90	2	120	28	26	11	33	1.91
67128--67176	27	1.9	24	88	12	71	10	26	0	63	1.26
68793--68864	32	2.2	32	87	0	108	37	16	12	33	1.86
70912--70952	21	2.0	21	85	9	57	21	24	21	31	1.98
71015--71066	20	2.9	18	78	21	56	25	17	28	28	1.97
70996--71064	36	1.9	36	87	0	102	28	14	27	28	1.95
71379--71434	18	2.8	20	84	10	71	46	10	14	28	1.78
74418--74458	21	2.0	21	85	9	57	24	26	19	29	1.98
74541--74591	16	2.9	17	78	21	52	25	19	29	25	1.99
74522--74591	36	1.9	36	91	0	113	25	17	28	28	1.97
74499--74592	20	4.9	20	74	17	83	26	14	29	28	1.95
74622--74683	20	3.3	20	72	25	71	24	12	32	30	1.93
74622--74671	16	2.8	18	77	22	52	26	16	30	28	1.96
74622--74691	36	1.9	36	88	0	104	25	17	28	28	1.97
78263--78290	2	14.0	2	100	0	56	50	0	0	50	1.00
79972--80092	60	2.0	60	93	0	206	25	19	20	34	1.96

Tables:   1

The End!