Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000419.1 Hibiscus syriacus cultivar Beakdansim tig00000766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 196632
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:2547 original size:67 final size:69
Alignment explanation
Indices: 2427--2559 Score: 198
Period size: 67 Copynumber: 2.0 Consensus size: 69
2417 TTAAAACAAT
* * *
2427 AGAATGAGATTGCTGAGAGGAAAAAACTAACATATTTTAAAAGTTACTAGGTCCTTAC-TTTTTC
1 AGAATGAGATTGCTGAGAGGAAAAAACCAACAGATTTTAAAAGTTAATAGGTCCTTACATTTTTC
2491 TAAC
66 TAAC
* * *
2495 AGAATGGGATTGCTGAGAGG-AAAAACCAACAGCTTTTAGAAGTTAATAGGTCCTTACATTTTTC
1 AGAATGAGATTGCTGAGAGGAAAAAACCAACAGATTTTAAAAGTTAATAGGTCCTTACATTTTTC
2559 T
66 T
2560 GGTAACCTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 32 0.55
68 26 0.45
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (69 bp):
AGAATGAGATTGCTGAGAGGAAAAAACCAACAGATTTTAAAAGTTAATAGGTCCTTACATTTTTC
TAAC
Found at i:8153 original size:99 final size:99
Alignment explanation
Indices: 7973--8285 Score: 563
Period size: 99 Copynumber: 3.2 Consensus size: 99
7963 AGGCAGTCAC
* * * **
7973 GAGATATCTGTTGGCTGTGGTTTAGAGATTAGAATCTACTTATTTGTCCATTTTTTTTCTACCCA
1 GAGAAATCAGTTGGCTGTGGTTTAGAGCTTAGAATCTACTTATTTGTCCATTTTTTTTCTAGTCA
8038 TTGACAATCCTTCCTGTTGTGTTCATTCCTATAT
66 TTGACAATCCTTCCTGTTGTGTTCATTCCTATAT
*
8072 GAGAAATCAGTTGGCTGTGGTTTAGAGCTTAGAATCTACTTATTTGTCCATTTTTTTTCTTGTCA
1 GAGAAATCAGTTGGCTGTGGTTTAGAGCTTAGAATCTACTTATTTGTCCATTTTTTTTCTAGTCA
8137 TTGACAATCCTTCCTGTTGTGTTCATTCCTATAT
66 TTGACAATCCTTCCTGTTGTGTTCATTCCTATAT
*
8171 GAGAAATCAGTTGGCTGTGGTTTAGAGCTTAGAATCTACGTATTTGTCCATTTTTTTTCTAGTCA
1 GAGAAATCAGTTGGCTGTGGTTTAGAGCTTAGAATCTACTTATTTGTCCATTTTTTTTCTAGTCA
8236 TTGACAATCCTTCCTGTTGTGTTCATTCCTATAT
66 TTGACAATCCTTCCTGTTGTGTTCATTCCTATAT
8270 GAGAAATCAGTTGGCT
1 GAGAAATCAGTTGGCT
8286 CTGAAATGTT
Statistics
Matches: 206, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 206 1.00
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.44
Consensus pattern (99 bp):
GAGAAATCAGTTGGCTGTGGTTTAGAGCTTAGAATCTACTTATTTGTCCATTTTTTTTCTAGTCA
TTGACAATCCTTCCTGTTGTGTTCATTCCTATAT
Found at i:11192 original size:44 final size:42
Alignment explanation
Indices: 11122--11289 Score: 176
Period size: 43 Copynumber: 3.9 Consensus size: 42
11112 AAACGGGGCC
* *
11122 TAAAGGTAAAAAGTGAGCTTAAAAAAATTATGGACTTCAATTA
1 TAAAGGTAAAAAGTGAGATTAAAAAAATTAGGGACTT-AATTA
* * *
11165 TAAAGGTAATAAAGTGAGATTGAAAAAATTAGGGGCCTAAATTA
1 TAAAGGTAA-AAAGTGAGATTAAAAAAATTA-GGGACTTAATTA
* * *
11209 TAAAGGTAAAAAATGAGATTAAAAAAAATAGGGGCCTTAATTA
1 TAAAGGTAAAAAGTGAGATTAAAAAAATTA-GGGACTTAATTA
* * *
11252 TGAAA-GTAAAAAGTGGGATTGAAAAAAATAAAGGACTT
1 T-AAAGGTAAAAAGTGAGATT-AAAAAAATTAGGGACTT
11290 TGAATCTCGA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
43 58 0.55
44 44 0.42
45 4 0.04
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.24
Consensus pattern (42 bp):
TAAAGGTAAAAAGTGAGATTAAAAAAATTAGGGACTTAATTA
Found at i:19907 original size:17 final size:18
Alignment explanation
Indices: 19879--19912 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
19869 CATCCTTCCT
19879 TTTTTTATCTTTGTCATA
1 TTTTTTATCTTTGTCATA
*
19897 TTTTTTA-CTTTTTCAT
1 TTTTTTATCTTTGTCAT
19913 GCATAAACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.12, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTTTATCTTTGTCATA
Found at i:20365 original size:2 final size:2
Alignment explanation
Indices: 20348--20382 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
20338 TCTGGAGGCT
* *
20348 TC TC TT TC TG TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
20383 GTGGTTCACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.43, G:0.03, T:0.54
Consensus pattern (2 bp):
TC
Found at i:34030 original size:28 final size:28
Alignment explanation
Indices: 33975--34031 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
33965 CCATTGTTGC
* *
33975 TTTCAAGCACTGACTCGACGATATAATG
1 TTTCAAGCACTGACTCGACGAGAAAATG
34003 TTTCAAGCACT-ACCTCGACGAGAAAATG
1 TTTCAAGCACTGA-CTCGACGAGAAAATG
34031 T
1 T
34032 AAACGGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (28 bp):
TTTCAAGCACTGACTCGACGAGAAAATG
Found at i:34362 original size:15 final size:16
Alignment explanation
Indices: 34342--34383 Score: 52
Period size: 14 Copynumber: 2.7 Consensus size: 16
34332 TAATTGTTAG
34342 TTGATTTAAATATT-T
1 TTGATTTAAATATTCT
34357 TTGA-TTAAATATTCT
1 TTGATTTAAATATTCT
*
34372 TTAATTATAAAT
1 TTGATT-TAAAT
34384 TAGAGTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 9 0.39
15 8 0.35
16 1 0.04
17 5 0.22
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (16 bp):
TTGATTTAAATATTCT
Found at i:34441 original size:18 final size:18
Alignment explanation
Indices: 34418--34453 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
34408 ATACATTTTT
* *
34418 TTATAAATTTTAAAAAAA
1 TTATAAAATATAAAAAAA
34436 TTATAAAATATAAAAAAA
1 TTATAAAATATAAAAAAA
34454 AAATTCATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TTATAAAATATAAAAAAA
Found at i:36789 original size:29 final size:29
Alignment explanation
Indices: 36747--36833 Score: 129
Period size: 29 Copynumber: 3.0 Consensus size: 29
36737 GTTCCGGGGG
*
36747 TAGGTCGCCATGCACGCCCGGCGACCTAC
1 TAGGTCGCCATGCACGCCCAGCGACCTAC
**
36776 TAGGTCGCCATGCACGCCCAGCGACCTGG
1 TAGGTCGCCATGCACGCCCAGCGACCTAC
* *
36805 TAGGTCGCCATGCATGCCCTGCGACCTAC
1 TAGGTCGCCATGCACGCCCAGCGACCTAC
36834 CAGCACCTCC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.17, C:0.39, G:0.28, T:0.16
Consensus pattern (29 bp):
TAGGTCGCCATGCACGCCCAGCGACCTAC
Found at i:36849 original size:10 final size:10
Alignment explanation
Indices: 36842--36917 Score: 75
Period size: 10 Copynumber: 7.3 Consensus size: 10
36832 ACCAGCACCT
36842 CCATGCACGC
1 CCATGCACGC
36852 CCATGCACGC
1 CCATGCACGC
*
36862 CCA-ACGAC-C
1 CCATGC-ACGC
36871 TCCATGCACGC
1 -CCATGCACGC
36882 CCATGCACGACC
1 CCATGCACG--C
36894 TCCATGCACGC
1 -CCATGCACGC
*
36905 CCAGGCACGC
1 CCATGCACGC
36915 CCA
1 CCA
36918 ACGACCTCCA
Statistics
Matches: 56, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
9 2 0.04
10 41 0.73
11 3 0.05
12 1 0.02
13 9 0.16
ACGTcount: A:0.22, C:0.50, G:0.18, T:0.09
Consensus pattern (10 bp):
CCATGCACGC
Found at i:36856 original size:40 final size:40
Alignment explanation
Indices: 36812--36907 Score: 106
Period size: 40 Copynumber: 2.3 Consensus size: 40
36802 TGGTAGGTCG
* **
36812 CCATGCATGCCCTGCGACCTACCA-GCAC-CTCCATGCACGC
1 CCATGCACGCCCAACGACCT-CCATGCACGC-CCATGCACGC
36852 CCATGCACGCCCAACGACCTCCATGCACGCCCATGCACGACC
1 CCATGCACGCCCAACGACCTCCATGCACGCCCATGCACG--C
36894 TCCATGCACGCCCA
1 -CCATGCACGCCCA
36908 GGCACGCCCA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
39 3 0.06
40 30 0.62
41 1 0.02
42 1 0.02
43 13 0.27
ACGTcount: A:0.22, C:0.49, G:0.17, T:0.12
Consensus pattern (40 bp):
CCATGCACGCCCAACGACCTCCATGCACGCCCATGCACGC
Found at i:36872 original size:30 final size:30
Alignment explanation
Indices: 36838--36937 Score: 142
Period size: 30 Copynumber: 3.6 Consensus size: 30
36828 ACCTACCAGC
36838 ACCTCCATGCACGCCCATGCACGCCCAACG
1 ACCTCCATGCACGCCCATGCACGCCCAACG
36868 ACCTCCATGCACGCCCAT----G--C-ACG
1 ACCTCCATGCACGCCCATGCACGCCCAACG
*
36891 ACCTCCATGCACGCCCAGGCACGCCCAACG
1 ACCTCCATGCACGCCCATGCACGCCCAACG
36921 ACCTCCATGCACGCCCA
1 ACCTCCATGCACGCCCA
36938 GCTCGCCAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 14
0.81 0.01 0.18
Matches are distributed among these distances:
23 20 0.32
24 1 0.02
26 1 0.02
27 1 0.02
29 1 0.02
30 38 0.61
ACGTcount: A:0.23, C:0.50, G:0.17, T:0.10
Consensus pattern (30 bp):
ACCTCCATGCACGCCCATGCACGCCCAACG
Found at i:36895 original size:23 final size:22
Alignment explanation
Indices: 36852--36913 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 22
36842 CCATGCACGC
36852 CCATGCACGCCCA--ACGACCT
1 CCATGCACGCCCAGCACGACCT
36872 CCATGCACGCCCATGCACGACCT
1 CCATGCACGCCCA-GCACGACCT
36895 CCATGCACGCCCAGGCACG
1 CCATGCACGCCCA-GCACG
36914 CCCAACGACC
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
20 13 0.34
23 25 0.66
ACGTcount: A:0.23, C:0.48, G:0.19, T:0.10
Consensus pattern (22 bp):
CCATGCACGCCCAGCACGACCT
Found at i:36900 original size:13 final size:13
Alignment explanation
Indices: 36865--36903 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
36855 TGCACGCCCA
36865 ACGACCTCCATGC
1 ACGACCTCCATGC
36878 ACG--C-CCATGC
1 ACGACCTCCATGC
36888 ACGACCTCCATGC
1 ACGACCTCCATGC
36901 ACG
1 ACG
36904 CCCAGGCACG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.39
11 1 0.04
12 1 0.04
13 12 0.52
ACGTcount: A:0.23, C:0.46, G:0.18, T:0.13
Consensus pattern (13 bp):
ACGACCTCCATGC
Found at i:37600 original size:21 final size:21
Alignment explanation
Indices: 37575--37618 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
37565 AATTTAGTTA
37575 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
37596 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
37617 AT
1 AT
37619 ATTATATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:37633 original size:28 final size:28
Alignment explanation
Indices: 37602--37655 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
37592 AATTATTAGT
*
37602 TTGTTAGTTTAAGTTATATTATATTAAA
1 TTGTTAGTTTAAGTTATATTAGATTAAA
37630 TTGTTAGTTTAAGTTATATTAGATTA
1 TTGTTAGTTTAAGTTATATTAGATTA
37656 TATAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (28 bp):
TTGTTAGTTTAAGTTATATTAGATTAAA
Found at i:38584 original size:14 final size:14
Alignment explanation
Indices: 38567--38747 Score: 107
Period size: 14 Copynumber: 13.3 Consensus size: 14
38557 GATGATTTAG
*
38567 TAATGATTTGATAA
1 TAATGATTTAATAA
*
38581 TAATTA-TT-ATAA
1 TAATGATTTAATAA
*
38593 TAATGATTTTATAA
1 TAATGATTTAATAA
* *
38607 TAATTATTTAGT--
1 TAATGATTTAATAA
* *
38619 T-ATTATTTAGTAA
1 TAATGATTTAATAA
38632 T--T-ATTT-ATAA
1 TAATGATTTAATAA
*
38642 TAATGATTTAATAC
1 TAATGATTTAATAA
*
38656 TAATGATTTCATAATTTAG
1 TAATGA-TT--TAA--TAA
*
38675 TAATGATTTAATAC
1 TAATGATTTAATAA
38689 TAATGATTTAATAA
1 TAATGATTTAATAA
38703 TAATGA-TT--TAA
1 TAATGATTTAATAA
*
38714 TAATGATTTAAATATT
1 TAATGATTT-AATA-A
*
38730 TAATGATTTAATAC
1 TAATGATTTAATAA
38744 TAAT
1 TAAT
38748 AATAATGATT
Statistics
Matches: 137, Mismatches: 12, Indels: 36
0.74 0.06 0.19
Matches are distributed among these distances:
10 4 0.03
11 23 0.17
12 14 0.10
13 11 0.08
14 52 0.38
15 8 0.06
16 12 0.09
17 3 0.02
18 2 0.01
19 8 0.06
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:38653 original size:11 final size:11
Alignment explanation
Indices: 38558--38724 Score: 61
Period size: 11 Copynumber: 13.8 Consensus size: 11
38548 TAATGATTTG
*
38558 ATGATTTAGTA
1 ATGATTTAATA
38569 ATGATTTGATAATA
1 ATGA-TT--TAATA
*
38583 ATTATTATAATA
1 ATGATT-TAATA
38595 ATGATTTTATAATA
1 ATGA--TT-TAATA
* * *
38609 ATTATTTAGTT
1 ATGATTTAATA
* *
38620 ATTATTTAGTA
1 ATGATTTAATA
*
38631 ATTATTTATAATA
1 ATGA-TT-TAATA
38644 ATGATTTAATACTA
1 ATGATTT-A-A-TA
*
38658 ATGATTTCAT-
1 ATGATTTAATA
*
38668 A--ATTTAGTA
1 ATGATTTAATA
38677 ATGATTTAATACTA
1 ATGATTT-A-A-TA
38691 ATGATTTAATAATA
1 ATGA-TT--TAATA
38705 ATGATTTAATA
1 ATGATTTAATA
38716 ATGATTTAA
1 ATGATTTAA
38725 ATATTTAATG
Statistics
Matches: 124, Mismatches: 13, Indels: 38
0.71 0.07 0.22
Matches are distributed among these distances:
8 5 0.04
9 1 0.01
10 1 0.01
11 41 0.33
12 20 0.16
13 12 0.10
14 39 0.31
15 3 0.02
16 1 0.01
17 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (11 bp):
ATGATTTAATA
Found at i:38707 original size:47 final size:46
Alignment explanation
Indices: 38587--38717 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 46
38577 ATAATAATTA
* * * *
38587 TTATAATAATGATTTTATAATAATTATTTAGTTATTATTTAGTAATTAT
1 TTATAATAATGATTTAATAATAATGATTTA---ATAATTTAGTAATGAT
* *
38636 TTATAATAATGATTTAATACTAATGATTTCATAATTTAGTAATGAT
1 TTATAATAATGATTTAATAATAATGATTTAATAATTTAGTAATGAT
*
38682 TTAATACTAATGATTTAATAATAATGATTTAATAAT
1 TT-ATAATAATGATTTAATAATAATGATTTAATAAT
38718 GATTTAAATA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
46 16 0.22
47 30 0.42
49 26 0.36
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (46 bp):
TTATAATAATGATTTAATAATAATGATTTAATAATTTAGTAATGAT
Found at i:38755 original size:20 final size:20
Alignment explanation
Indices: 38711--38766 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
38701 AATAATGATT
38711 TAATAATGATTTAA-A-T-A
1 TAATAATGATTTAATACTAA
*
38728 T-TTAATGATTTAATACTAA
1 TAATAATGATTTAATACTAA
*
38747 TAATAATGATTTGATACTAA
1 TAATAATGATTTAATACTAA
38767 AAATCATTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
16 11 0.34
17 2 0.06
18 1 0.03
19 2 0.06
20 16 0.50
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (20 bp):
TAATAATGATTTAATACTAA
Found at i:39654 original size:14 final size:14
Alignment explanation
Indices: 39637--39755 Score: 102
Period size: 14 Copynumber: 8.3 Consensus size: 14
39627 AATCATTATT
39637 ATTAGTATTAAATC
1 ATTAGTATTAAATC
*
39651 ATTAAATATTTAAATC
1 ATT-AGTA-TTAAATC
39667 A-T--TATTAAATC
1 ATTAGTATTAAATC
*
39678 ATTATTATTAAATC
1 ATTAGTATTAAATC
39692 ATTAGTATTAAATC
1 ATTAGTATTAAATC
*
39706 ATTACTAAATTATGAAATC
1 ATTAGT--A-T-T-AAATC
39725 ATTAGTATTAAATC
1 ATTAGTATTAAATC
* *
39739 ATTATTA-TAAATA
1 ATTAGTATTAAATC
39752 ATTA
1 ATTA
39756 CTAAATAATA
Statistics
Matches: 89, Mismatches: 6, Indels: 21
0.77 0.05 0.18
Matches are distributed among these distances:
11 8 0.09
12 3 0.03
13 9 0.10
14 41 0.46
15 5 0.06
16 10 0.11
17 2 0.02
18 1 0.01
19 10 0.11
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (14 bp):
ATTAGTATTAAATC
Found at i:39676 original size:11 final size:11
Alignment explanation
Indices: 39660--39826 Score: 61
Period size: 14 Copynumber: 13.8 Consensus size: 11
39650 CATTAAATAT
39660 TTAAATCATTA
1 TTAAATCATTA
39671 TTAAATCATTATTA
1 TTAAATC---ATTA
39685 TTAAATCATTAGTA
1 TTAAATCA-T--TA
39699 TTAAATCATTA
1 TTAAATCATTA
*
39710 CT-AA--ATTA
1 TTAAATCATTA
*
39718 TGAAATCATTAGTA
1 TTAAATCA-T--TA
39732 TTAAATCATTA
1 TTAAATCATTA
*
39743 TTATAAATAATTA
1 -T-TAAATCATTA
* * *
39756 CTAAATAATAA
1 TTAAATCATTA
* *
39767 CTAAATAATTA
1 TTAAATCATTA
39778 TTATAAAATCATTA
1 -T-T-AAATCATTA
*
39792 TTATAATAATTA
1 TTA-AATCATTA
39804 TTATCAAATCATTA
1 -T-T-AAATCATTA
*
39818 CTAAATCAT
1 TTAAATCAT
39827 CAAATCATTA
Statistics
Matches: 122, Mismatches: 13, Indels: 42
0.69 0.07 0.24
Matches are distributed among these distances:
8 4 0.03
9 2 0.02
10 2 0.02
11 41 0.34
12 12 0.10
13 14 0.11
14 46 0.38
15 1 0.01
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (11 bp):
TTAAATCATTA
Found at i:39683 original size:61 final size:62
Alignment explanation
Indices: 39618--39853 Score: 181
Period size: 61 Copynumber: 3.9 Consensus size: 62
39608 ACAATGATTT
*
39618 TTATTATCAAATCATTATTATTAGT-ATTAAATCATTAAATATTTAAATCATTATTAAATCA
1 TTATTATCAAATCATTATTATTAATAATTAAATCATTAAATATTTAAATCATTATTAAATCA
* * * *
39679 TTATTATTAAATCATTAGTATTAAATCATT--A-C--TAAAT-TATGAAATCATTAGTATTAAAT
1 TTATTATCAAATCATTATTATT-AATAATTAAATCATTAAATAT-TTAAATCA-T--TATTAAAT
39738 CA
61 CA
* * * * * * * *
39740 TTATTAT-AAATAATTACTAAATAATAACTAAATAATT-ATTA-TAAAATCATTATTATAATAA
1 TTATTATCAAATCATTA-TTATTAATAATTAAATCATTAAATATTTAAATCATTATTA-AATCA
* * *
39801 TTATTATCAAATCATTACTA--AATCATCAAATCATTAAATATTTAAATCATTAT
1 TTATTATCAAATCATTATTATTAATAATTAAATCATTAAATATTTAAATCATTAT
39854 CAACAACCAA
Statistics
Matches: 135, Mismatches: 23, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
57 1 0.01
58 12 0.09
59 12 0.09
60 22 0.16
61 63 0.47
62 12 0.09
63 10 0.07
64 2 0.01
65 1 0.01
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (62 bp):
TTATTATCAAATCATTATTATTAATAATTAAATCATTAAATATTTAAATCATTATTAAATCA
Found at i:39702 original size:47 final size:49
Alignment explanation
Indices: 39620--39826 Score: 169
Period size: 47 Copynumber: 4.3 Consensus size: 49
39610 AATGATTTTT
* * *
39620 ATTATCAAATCATTATTATT-AGT-ATTAAATCATTAAAT-ATT-TAAATC
1 ATTATTAAATCATTATTATTAAATCATT--ATTATTAAATAATTATAAATC
* *
39667 ATTATTAAATCATTATTATTAAATCATTAGTATTAAATCATTACT-AA--
1 ATTATTAAATCATTATTATTAAATCATTATTATTAAATAATTA-TAAATC
* * *
39714 ATTATGAAATCATTAGTATTAAATCATTATTA-TAAATAATTACTAAATA
1 ATTATTAAATCATTATTATTAAATCATTATTATTAAATAATTA-TAAATC
* * * * * *
39763 ATAACTAAATAATTATTATAAAATCATTATTATAATAATTATTATCAAATC
1 ATTATTAAATCATTATTATTAAATCATTATTATTA-AATAATTAT-AAATC
*
39814 ATTACTAAATCAT
1 ATTATTAAATCAT
39827 CAAATCATTA
Statistics
Matches: 130, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
46 11 0.08
47 58 0.45
48 5 0.04
49 31 0.24
50 3 0.02
51 22 0.17
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (49 bp):
ATTATTAAATCATTATTATTAAATCATTATTATTAAATAATTATAAATC
Found at i:39791 original size:14 final size:13
Alignment explanation
Indices: 39714--39817 Score: 67
Period size: 14 Copynumber: 8.1 Consensus size: 13
39704 TCATTACTAA
*
39714 ATTATGAAATCATT
1 ATTAT-AAATAATT
* *
39728 AGTATTAAATCATT
1 ATTA-TAAATAATT
39742 ATTATAAATAATT
1 ATTATAAATAATT
*
39755 A--CTAAATAA-T
1 ATTATAAATAATT
39765 A--ACTAAATAATT
1 ATTA-TAAATAATT
*
39777 ATTATAAAATCATT
1 ATTAT-AAATAATT
39791 ATTAT-AATAATT
1 ATTATAAATAATT
*
39803 ATTATCAAATCATT
1 ATTAT-AAATAATT
39817 A
1 A
39818 CTAAATCATC
Statistics
Matches: 74, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
10 2 0.03
11 14 0.19
12 13 0.18
13 10 0.14
14 34 0.46
15 1 0.01
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (13 bp):
ATTATAAATAATT
Found at i:40774 original size:32 final size:28
Alignment explanation
Indices: 40737--40789 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
40727 TTATATAATC
40737 TAATAT-ATATAACTTAAACTAACAATT
1 TAATATAATATAACTTAAACTAACAATT
40764 TAATATAATATAACTTAAACTAACAA
1 TAATATAATATAACTTAAACTAACAA
40790 ACTAATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (28 bp):
TAATATAATATAACTTAAACTAACAATT
Found at i:40803 original size:28 final size:27
Alignment explanation
Indices: 40736--40796 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 27
40726 TTTATATAAT
*
40736 CTAATATATATAACTTAAACTAACAAT
1 CTAATATATATAACTTAAACTAACAAA
*
40763 TTAATATAATATAACTTAAACTAACAAA
1 CTAATAT-ATATAACTTAAACTAACAAA
40791 CTAATA
1 CTAATA
40797 ATTTATACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 6 0.20
28 24 0.80
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (27 bp):
CTAATATATATAACTTAAACTAACAAA
Found at i:40806 original size:21 final size:21
Alignment explanation
Indices: 40773--40821 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
40763 TTAATATAAT
40773 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
40794 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
40815 ATTAACT
1 A-TAACT
40822 AAATTTCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:41476 original size:13 final size:13
Alignment explanation
Indices: 41458--41496 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
41448 GCGAGCTGGG
41458 CGTGCATGGAGGT
1 CGTGCATGGAGGT
41471 CGTGCAT-G-GG-
1 CGTGCATGGAGGT
41481 CGTGCATGGAGGT
1 CGTGCATGGAGGT
41494 CGT
1 CGT
41497 TGGGCGTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
10 7 0.30
11 3 0.13
12 3 0.13
13 10 0.43
ACGTcount: A:0.13, C:0.18, G:0.46, T:0.23
Consensus pattern (13 bp):
CGTGCATGGAGGT
Found at i:41502 original size:20 final size:21
Alignment explanation
Indices: 41454--41509 Score: 87
Period size: 23 Copynumber: 2.6 Consensus size: 21
41444 TTTGGCGAGC
41454 TGGGCGTGCATGGAGGTCGTGCA
1 TGGGCGTGCATGGAGGTCGT--A
41477 TGGGCGTGCATGGAGGTCGT-
1 TGGGCGTGCATGGAGGTCGTA
41497 TGGGCGTGCATGG
1 TGGGCGTGCATGG
41510 GCGTGCATGG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
20 13 0.39
23 20 0.61
ACGTcount: A:0.11, C:0.16, G:0.50, T:0.23
Consensus pattern (21 bp):
TGGGCGTGCATGGAGGTCGTA
Found at i:41525 original size:10 final size:10
Alignment explanation
Indices: 41454--41519 Score: 64
Period size: 10 Copynumber: 6.3 Consensus size: 10
41444 TTTGGCGAGC
41454 TGGGCGTGCA
1 TGGGCGTGCA
41464 TGGAGGTCGTGCA
1 T-G-GG-CGTGCA
41477 TGGGCGTGCA
1 TGGGCGTGCA
*
41487 TGGAG-GT-CGT
1 TGG-GCGTGC-A
41497 TGGGCGTGCA
1 TGGGCGTGCA
41507 TGGGCGTGCA
1 TGGGCGTGCA
41517 TGG
1 TGG
41520 AGGTGCTGGT
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
9 2 0.04
10 30 0.64
11 5 0.11
12 3 0.06
13 7 0.15
ACGTcount: A:0.11, C:0.17, G:0.50, T:0.23
Consensus pattern (10 bp):
TGGGCGTGCA
Found at i:41565 original size:29 final size:29
Alignment explanation
Indices: 41530--41645 Score: 169
Period size: 29 Copynumber: 4.0 Consensus size: 29
41520 AGGTGCTGGT
*
41530 AGGTCGCAGGGCATGCATGGCGACCTACC
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
* **
41559 AGGTCGCTGGGCGTGCATGGCGACCTAGT
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
* **
41588 AGGTCGCCGGGCGTGCATGGCGACCTAGT
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
41617 AGGTCGCAGGGCGTGCATGGCGACCTACC
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
41646 CCCGGAACTG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 79 1.00
ACGTcount: A:0.16, C:0.28, G:0.39, T:0.16
Consensus pattern (29 bp):
AGGTCGCAGGGCGTGCATGGCGACCTACC
Found at i:41605 original size:58 final size:58
Alignment explanation
Indices: 41528--41643 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
41518 GGAGGTGCTG
*
41528 GTAGGTCGCAGGGCATGCATGGCGACCTACCAGGTCGCTGGGCGTGCATGGCGACCTA
1 GTAGGTCGCAGGGCATGCATGGCGACCTACCAGGTCGCAGGGCGTGCATGGCGACCTA
* * **
41586 GTAGGTCGCCGGGCGTGCATGGCGACCTAGTAGGTCGCAGGGCGTGCATGGCGACCTA
1 GTAGGTCGCAGGGCATGCATGGCGACCTACCAGGTCGCAGGGCGTGCATGGCGACCTA
41644 CCCCCGGAAC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.16, C:0.27, G:0.40, T:0.17
Consensus pattern (58 bp):
GTAGGTCGCAGGGCATGCATGGCGACCTACCAGGTCGCAGGGCGTGCATGGCGACCTA
Found at i:45077 original size:24 final size:24
Alignment explanation
Indices: 45023--45081 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
45013 ACAAATCAGC
*
45023 ATCCATGTCAAGTATCATATAAAA
1 ATCCAGGTCAAGTATCATATAAAA
* ***
45047 ATTCAGGTCAAGTATCATATTTGA
1 ATCCAGGTCAAGTATCATATAAAA
45071 ATCCAGGTCAA
1 ATCCAGGTCAA
45082 CAATCAGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (24 bp):
ATCCAGGTCAAGTATCATATAAAA
Found at i:45850 original size:28 final size:28
Alignment explanation
Indices: 45814--45972 Score: 117
Period size: 28 Copynumber: 5.6 Consensus size: 28
45804 CTTTTTAAAC
* *
45814 TAATAACCAAAATAGCACTATTTCAAAT
1 TAATTACCAAAATAGCACTATTTCGAAT
** *
45842 TAATTACCAAAATAGCACCCTTATTGAAT
1 TAATTACCAAAATAGCACTATT-TCGAAT
* *
45871 TATTTCCCAAAATAGCA-TCATTTCGAAT
1 TAATTACCAAAATAGCACT-ATTTCGAAT
* ** * ** *
45899 TAATTCCCAGCATATCACT-TTTTTAAA
1 TAATTACCAAAATAGCACTATTTCGAAT
*
45926 CAATTACCAAAATAGCACCTATTTCGAAT
1 TAATTACCAAAATAGCA-CTATTTCGAAT
*
45955 TAATT-CACAGAATAGCAC
1 TAATTAC-CAAAATAGCAC
45973 CAAAATCGAA
Statistics
Matches: 98, Mismatches: 27, Indels: 12
0.72 0.20 0.09
Matches are distributed among these distances:
27 17 0.17
28 41 0.42
29 40 0.41
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (28 bp):
TAATTACCAAAATAGCACTATTTCGAAT
Found at i:45969 original size:29 final size:29
Alignment explanation
Indices: 45821--45994 Score: 103
Period size: 29 Copynumber: 6.1 Consensus size: 29
45811 AACTAATAAC
*
45821 CAAAATAGCA-CTATTTCAAATTAATT-A
1 CAAAATAGCACCTATTTCGAATTAATTCA
* *
45848 CCAAAATAGCACCCT-TATT-GAATTATTTCC
1 -CAAAATAGCA-CCTAT-TTCGAATTAATTCA
* *
45878 CAAAATAGCATC-ATTTCGAATTAATTCC
1 CAAAATAGCACCTATTTCGAATTAATTCA
** * ** **
45906 CAGCATATCA-CT-TTTTTAAACAATT-A
1 CAAAATAGCACCTATTTCGAATTAATTCA
45932 CCAAAATAGCACCTATTTCGAATTAATTCA
1 -CAAAATAGCACCTATTTCGAATTAATTCA
* * ** *
45962 CAGAATAGCACCAAAATCGAATTAATTCT
1 CAAAATAGCACCTATTTCGAATTAATTCA
45991 CAAA
1 CAAA
45995 TATCACCGGT
Statistics
Matches: 109, Mismatches: 26, Indels: 21
0.70 0.17 0.13
Matches are distributed among these distances:
27 19 0.17
28 31 0.28
29 54 0.50
30 5 0.05
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (29 bp):
CAAAATAGCACCTATTTCGAATTAATTCA
Found at i:45998 original size:84 final size:84
Alignment explanation
Indices: 45843--46000 Score: 196
Period size: 84 Copynumber: 1.9 Consensus size: 84
45833 ATTTCAAATT
* * * **
45843 AATTACCAAAATAGCACCCTTATTGAATTATTTCCCAAAATAGCATCATTTCGAATTAATTCCCA
1 AATTACCAAAATAGCACCCTTATTGAATTAATTCACAAAATAGCACCAAATCGAATTAATTCCCA
*
45908 GCATATCACTTTTTTAAAC
66 GAATATCACTTTTTTAAAC
*
45927 AATTACCAAAATAGCA-CC-TATTTCGAATTAATTCACAGAATAGCACCAAAATCGAATTAATTC
1 AATTACCAAAATAGCACCCTTA-TT-GAATTAATTCACAAAATAGCACC-AAATCGAATTAATTC
*
45990 TCA-AATATCAC
63 CCAGAATATCAC
46001 CGGTCAACGG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
82 2 0.03
83 4 0.06
84 42 0.67
85 15 0.24
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (84 bp):
AATTACCAAAATAGCACCCTTATTGAATTAATTCACAAAATAGCACCAAATCGAATTAATTCCCA
GAATATCACTTTTTTAAAC
Found at i:52335 original size:24 final size:24
Alignment explanation
Indices: 52281--52339 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
52271 ACAAATTAGC
*
52281 ATCCATGTCAAGTATCATATAAAA
1 ATCCAGGTCAAGTATCATATAAAA
* ***
52305 ATTCAGGTCAAGTATCATATTTGA
1 ATCCAGGTCAAGTATCATATAAAA
52329 ATCCAGGTCAA
1 ATCCAGGTCAA
52340 CAATCAGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (24 bp):
ATCCAGGTCAAGTATCATATAAAA
Found at i:53089 original size:30 final size:30
Alignment explanation
Indices: 53049--53117 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
53039 CATTTTACAT
* * *
53049 AAATATCACCCCTTTTTAAAATAATAACCA
1 AAATAGCACCCCATTTCAAAATAATAACCA
* *
53079 AAATAGCA-CCCATTTCAAATTAATTACCA
1 AAATAGCACCCCATTTCAAAATAATAACCA
53108 AAATAGCACC
1 AAATAGCACC
53118 ATTATTGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 25 0.76
30 8 0.24
ACGTcount: A:0.46, C:0.25, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATAGCACCCCATTTCAAAATAATAACCA
Found at i:53109 original size:29 final size:28
Alignment explanation
Indices: 53070--53236 Score: 111
Period size: 29 Copynumber: 5.7 Consensus size: 28
53060 CTTTTTAAAA
* *
53070 TAATAACCAAAATAGCACCCATTTCAAAT
1 TAATTACCAAAATAGCA-CCATTTCGAAT
*
53099 TAATTACCAAAATAGCACCATTATTGAAT
1 TAATTACCAAAATAGCACCATT-TCGAAT
* * *
53128 TATTTCCCAAAATAGCAACATTTCGAAT
1 TAATTACCAAAATAGCACCATTTCGAAT
* * * ** * *
53156 TAATTCCCAGAATATCACTTTTTTCCAAAAAA
1 TAATTACCAAAATAGCAC-CATTT-C--GAAT
* *
53188 AAATTACCAAAATAACACCTATTTCGAAT
1 TAATTACCAAAATAGCACC-ATTTCGAAT
*
53217 TAATT-CTCAGAATAGCACCA
1 TAATTAC-CAAAATAGCACCA
53237 AAATCATATT
Statistics
Matches: 105, Mismatches: 26, Indels: 15
0.72 0.18 0.10
Matches are distributed among these distances:
28 26 0.25
29 58 0.55
30 1 0.01
31 1 0.01
32 19 0.18
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (28 bp):
TAATTACCAAAATAGCACCATTTCGAAT
Found at i:58164 original size:2 final size:2
Alignment explanation
Indices: 58159--58191 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
58149 AAAAAAGTTT
58159 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
58192 TTAAAAATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:61054 original size:41 final size:40
Alignment explanation
Indices: 61009--61124 Score: 142
Period size: 41 Copynumber: 2.9 Consensus size: 40
60999 GATTCTGATT
* * *
61009 ATCGCATTGCGATTTCCCAAATTCGCAATGCGATTACGTAA
1 ATCGCAATGCGAATTCGCAAA-TCGCAATGCGATTACGTAA
* * *
61050 ATCGCAATGCGAATTAGGAAAATCGCAATGCGAATACGTAA
1 ATCGCAATGCGAATT-CGCAAATCGCAATGCGATTACGTAA
* *
61091 ATCGCAATGCGAATACGTAAATCGCAATGCGATT
1 ATCGCAATGCGAATTCGCAAATCGCAATGCGATT
61125 TACATAGCGT
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
40 16 0.25
41 45 0.70
42 3 0.05
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (40 bp):
ATCGCAATGCGAATTCGCAAATCGCAATGCGATTACGTAA
Found at i:61056 original size:20 final size:20
Alignment explanation
Indices: 61031--61124 Score: 143
Period size: 20 Copynumber: 4.7 Consensus size: 20
61021 TTTCCCAAAT
61031 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
* *
61051 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCG-ATTACGTAAA
*
61072 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGATTACGTAAA
*
61092 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGATTACGTAAA
61112 TCGCAATGCGATT
1 TCGCAATGCGATT
61125 TACATAGCGT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
20 49 0.73
21 18 0.27
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGATTACGTAAA
Found at i:61677 original size:33 final size:33
Alignment explanation
Indices: 61626--61751 Score: 153
Period size: 33 Copynumber: 3.8 Consensus size: 33
61616 CGAGAATAAA
* **
61626 AATCGCAACGCGGAAATGACTATCGCAACGAGAG
1 AATCACAACGC-GAAATGAAAATCGCAACGAGAG
*
61660 AATTACAACGCGAAATGAAAATCGCAACGAGAG
1 AATCACAACGCGAAATGAAAATCGCAACGAGAG
* *
61693 AATCGCAACGCGAAATGAAAATCGCAACGAGAT
1 AATCACAACGCGAAATGAAAATCGCAACGAGAG
* * **
61726 AATCGCAATGCGAAACCAAAATCGCA
1 AATCACAACGCGAAATGAAAATCGCA
61752 TTGCGATTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
33 73 0.89
34 9 0.11
ACGTcount: A:0.44, C:0.22, G:0.21, T:0.12
Consensus pattern (33 bp):
AATCACAACGCGAAATGAAAATCGCAACGAGAG
Found at i:61717 original size:19 final size:19
Alignment explanation
Indices: 61665--61721 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
61655 GAGAGAATTA
61665 CAACGCGAAATGAAAATCG
1 CAACGCGAAATGAAAATCG
*
61684 CAA--CG--A-GAGAATCG
1 CAACGCGAAATGAAAATCG
61698 CAACGCGAAATGAAAATCG
1 CAACGCGAAATGAAAATCG
61717 CAACG
1 CAACG
61722 AGATAATCGC
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
14 10 0.32
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 15 0.48
ACGTcount: A:0.46, C:0.23, G:0.23, T:0.09
Consensus pattern (19 bp):
CAACGCGAAATGAAAATCG
Found at i:61731 original size:14 final size:14
Alignment explanation
Indices: 61676--61733 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 14
61666 AACGCGAAAT
61676 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
61690 GAGAATCGCAACGCGAAA
1 GAAAATCGCAA--CG--A
61708 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
*
61723 GATAATCGCAA
1 GAAAATCGCAA
61734 TGCGAAACCA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.47, C:0.21, G:0.22, T:0.10
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:61739 original size:66 final size:67
Alignment explanation
Indices: 61626--61751 Score: 173
Period size: 66 Copynumber: 1.9 Consensus size: 67
61616 CGAGAATAAA
** * **
61626 AATCGCAACGCGGAAATGACTATCGCAACGAGAGAATTACAACGCGAAATGAAAATCGCAACGAG
1 AATCGCAACGCGGAAATGAAAATCGCAACGAGAGAATCACAACGCGAAACCAAAATCGCAACGAG
61691 AG
66 AG
* * *
61693 AATCGCAACGC-GAAATGAAAATCGCAACGAGATAATCGCAATGCGAAACCAAAATCGCA
1 AATCGCAACGCGGAAATGAAAATCGCAACGAGAGAATCACAACGCGAAACCAAAATCGCA
61752 TTGCGATTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
66 40 0.78
67 11 0.22
ACGTcount: A:0.44, C:0.22, G:0.21, T:0.12
Consensus pattern (67 bp):
AATCGCAACGCGGAAATGAAAATCGCAACGAGAGAATCACAACGCGAAACCAAAATCGCAACGAG
AG
Found at i:61788 original size:14 final size:14
Alignment explanation
Indices: 61769--61825 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
61759 TTTCATTTCG
61769 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
61783 CGTTGCGATTTACATTT
1 CGTTGCGA-TT-C-TCT
61800 GGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
61816 CGTTGCGATT
1 CGTTGCGATT
61826 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 18 0.50
15 2 0.06
16 3 0.08
17 3 0.08
18 2 0.06
19 8 0.22
ACGTcount: A:0.11, C:0.23, G:0.25, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:61799 original size:33 final size:33
Alignment explanation
Indices: 61752--61878 Score: 175
Period size: 33 Copynumber: 3.8 Consensus size: 33
61742 CAAAATCGCA
61752 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
61785 TTGCGATTTACATTTGGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* * *
61818 TTGCGATTTTCATTTCGCGTTGCAATTCCCTTG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
61851 TTGCGATAGTT-ATTTCCGCGTTGCGATT
1 TTGCGAT-TTTCATTT-CGCGTTGCGATT
61879 TTCATTTCAA
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
33 70 0.84
34 13 0.16
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:61840 original size:19 final size:19
Alignment explanation
Indices: 61747--61840 Score: 73
Period size: 19 Copynumber: 5.5 Consensus size: 19
61737 GAAACCAAAA
*
61747 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
61766 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
61780 TCTCGTTGCGATTTACATT
1 TCGCGTTGCGATTTTCATT
*
61799 TGGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
61813 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
61832 TCGCGTTGC
1 TCGCGTTGC
61841 AATTCCCTTG
Statistics
Matches: 56, Mismatches: 9, Indels: 20
0.66 0.11 0.24
Matches are distributed among these distances:
14 19 0.34
16 5 0.09
17 5 0.09
19 27 0.48
ACGTcount: A:0.11, C:0.23, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:62962 original size:20 final size:19
Alignment explanation
Indices: 62860--63005 Score: 131
Period size: 19 Copynumber: 7.8 Consensus size: 19
62850 CAAATGATAA
*
62860 TCGCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATT
*
62879 TCGCATTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
62893 TCTCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
*
62912 TCGCGTTGCGATTTTCGTT
1 TCGCGTTGCGATTTTCATT
62931 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
62950 CTCTCGCTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
* **
62970 TCGTGTTGCGATAGTCATTTT
1 TCGCGTTGCGATTTTCA--TT
*
62991 TCACGTTGCGATTTT
1 TCGCGTTGCGATTTT
63006 AAGTTCCAGA
Statistics
Matches: 99, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
14 9 0.09
16 2 0.02
17 2 0.02
19 56 0.57
20 17 0.17
21 13 0.13
ACGTcount: A:0.12, C:0.21, G:0.21, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:62972 original size:39 final size:38
Alignment explanation
Indices: 62860--62981 Score: 119
Period size: 33 Copynumber: 3.3 Consensus size: 38
62850 CAAATGATAA
* **
62860 TCGCGTTGCGATTTTAATTTCGCATTGCGA--TTC---
1 TCGCGTTGCGATTTTCATTTCGCGCTGCGATTTTCATT
* * * *
62893 TCTCGTTGCGATTTTTATTTCGCGTTGCGATTTTCGTT
1 TCGCGTTGCGATTTTCATTTCGCGCTGCGATTTTCATT
*
62931 TCGCGTTGCGATTTTCATTCTCTCGCTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT-TCGCGCTGCGATTTTCATT
*
62970 TCGTGTTGCGAT
1 TCGCGTTGCGAT
62982 AGTCATTTTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
33 27 0.36
35 3 0.04
38 17 0.23
39 27 0.36
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.47
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGCTGCGATTTTCATT
Found at i:64849 original size:13 final size:14
Alignment explanation
Indices: 64816--64849 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
64806 TTTATTGTTT
64816 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
64830 AAATGATTTGT-AA
1 AATTGATTTGTAAA
64843 AATTGAT
1 AATTGAT
64850 GTGAACATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:65013 original size:19 final size:19
Alignment explanation
Indices: 64938--65003 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
64928 AAAAATGACT
*
64938 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
64957 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
64971 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
64990 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
65004 CTAAATTCGC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 24 0.60
ACGTcount: A:0.45, C:0.21, G:0.23, T:0.11
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:65056 original size:33 final size:33
Alignment explanation
Indices: 65013--65139 Score: 200
Period size: 33 Copynumber: 3.8 Consensus size: 33
65003 ACTAAATTCG
* * * *
65013 CGTTGTGATTTTCATTTTGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
65046 CGTTGCGATTTTCATTTCGCATTGCGATTATCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
65079 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
65112 CGTTTCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
65140 AGTCATTTCC
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 87 1.00
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:65070 original size:19 final size:19
Alignment explanation
Indices: 65048--65159 Score: 91
Period size: 19 Copynumber: 6.4 Consensus size: 19
65038 GATTCCCTCG
65048 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
65067 TTGCGA--TT-ATCTCG--
1 TTGCGATTTTCATTTCGCA
65081 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
65100 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
*
65114 TTTCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
** *
65133 TTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTT-CGCA
65153 TTGCGAT
1 TTGCGAT
65160 AGACATTAAG
Statistics
Matches: 73, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
14 11 0.15
16 14 0.19
17 14 0.19
19 24 0.33
20 10 0.14
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:65158 original size:20 final size:19
Alignment explanation
Indices: 65123--65166 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
65113 GTTTCGATTT
65123 TCATTTCGCATTGCGATAG
1 TCATTTCGCATTGCGATAG
*
65142 TCATTTCCGCGTTGCGATAG
1 TCATTT-CGCATTGCGATAG
*
65162 ACATT
1 TCATT
65167 AAGATGATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (19 bp):
TCATTTCGCATTGCGATAG
Found at i:65205 original size:20 final size:19
Alignment explanation
Indices: 65133--65205 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 19
65123 TCATTTCGCA
*
65133 TTGCGATAGTCATTTCCGCG
1 TTGCGATAGTCA-TTCCGTG
* **
65153 TTGCGATAGACATTAAGATG
1 TTGCGATAGTCATTCCG-TG
65173 ATTGCGA-ACGTCATATCCGTG
1 -TTGCGATA-GTCAT-TCCGTG
65194 TTGCGATAGTCA
1 TTGCGATAGTCA
65206 AATGAATGCC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.07
20 23 0.56
21 13 0.32
22 2 0.05
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (19 bp):
TTGCGATAGTCATTCCGTG
Found at i:67716 original size:24 final size:24
Alignment explanation
Indices: 67689--67735 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
67679 CAAAATCAGA
67689 GTATTGACCAAGATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
*
67713 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
67736 AATACTGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:67744 original size:24 final size:24
Alignment explanation
Indices: 67693--67744 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
67683 ATCAGAGTAT
** *
67693 TGACCAAGATCAAAGTTCGGGTAT
1 TGACCAAGATCAAAGTTCGAATAC
*
67717 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTTCGAATAC
67741 TGAC
1 TGAC
67745 TAGTACTCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (24 bp):
TGACCAAGATCAAAGTTCGAATAC
Found at i:68649 original size:21 final size:21
Alignment explanation
Indices: 68605--68761 Score: 180
Period size: 21 Copynumber: 7.7 Consensus size: 21
68595 ACGATTTACT
* *
68605 AAATCGCAATGCG-ATTACGT
1 AAATCGCAATGCGAATTAGGA
68625 AAATCG-AAGTGCGAATTAGGA
1 AAATCGCAA-TGCGAATTAGGA
* * *
68646 AAATCGTAATGCG-ATT-CGT
1 AAATCGCAATGCGAATTAGGA
* *
68665 AAATCGCAATGCG-ATTAAGT
1 AAATCGCAATGCGAATTAGGA
*
68685 AAATTGCAATGCGAATTAGGA
1 AAATCGCAATGCGAATTAGGA
*
68706 AAATCGCAAAGCGAATTAGGA
1 AAATCGCAATGCGAATTAGGA
*
68727 AAATCGCAACGCGAATTAGGA
1 AAATCGCAATGCGAATTAGGA
68748 AAATCGCAATGCGA
1 AAATCGCAATGCGA
68762 TAGTCAGAAT
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
19 18 0.15
20 27 0.23
21 72 0.61
22 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (21 bp):
AAATCGCAATGCGAATTAGGA
Found at i:73505 original size:23 final size:25
Alignment explanation
Indices: 73456--73504 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
73446 TAAAATATAA
73456 ATTATTCTTAAAATAACATTTATTTT
1 ATTATTCTTAAAAT-ACATTTATTTT
*
73482 ATTATTCTTAAAAT-TATTTATTT
1 ATTATTCTTAAAATACATTTATTT
73505 AACGAGACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.36
26 14 0.64
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (25 bp):
ATTATTCTTAAAATACATTTATTTT
Found at i:76643 original size:4 final size:4
Alignment explanation
Indices: 76634--76955 Score: 563
Period size: 4 Copynumber: 80.5 Consensus size: 4
76624 CTGCAAATGT
76634 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76682 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
76730 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
76778 GTAC GTAC ATAC GTAC GTAC GTAC ATAC GTAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
76826 ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76874 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
76922 ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
76956 GTAAAAAAGA
Statistics
Matches: 308, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 308 1.00
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:82848 original size:20 final size:20
Alignment explanation
Indices: 82825--82862 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
82815 TAAAAAATAA
*
82825 TTAAAATATTATTATTTTAT
1 TTAAAATATTAATATTTTAT
82845 TTAAAATATTAATATTTT
1 TTAAAATATTAATATTTT
82863 TTAATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TTAAAATATTAATATTTTAT
Found at i:82913 original size:19 final size:20
Alignment explanation
Indices: 82889--82931 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
82879 AATGTCTAAC
*
82889 AATAATAAAATTAATAAAA-
1 AATAATAAAATCAATAAAAT
82908 AATAATAAAATCAATAAAAT
1 AATAATAAAATCAATAAAAT
82928 AATA
1 AATA
82932 TTAATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (20 bp):
AATAATAAAATCAATAAAAT
Found at i:86899 original size:2 final size:2
Alignment explanation
Indices: 86892--86932 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
86882 TTCTCCTTAT
86892 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
86933 AGAACTGGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:95121 original size:62 final size:61
Alignment explanation
Indices: 95050--95170 Score: 154
Period size: 62 Copynumber: 2.0 Consensus size: 61
95040 CTAATGTGAC
* *
95050 TCTTAGGTAGGCTCTGCGGCCCTGAGATCATTCTCGGGTAGGCCCGCAG-CCCTAAGATGTGT
1 TCTTAGGTAGGCCCTGCGGCCCT-A-AACATTCTCGGGTAGGCCCGCAGACCCTAAGATGTGT
* * * * *
95112 TCTTAGGTAGGCCCTGTGGCCCTAAACTTTCTTGGGTAGGCTCTCAGACCCTAAGATGT
1 TCTTAGGTAGGCCCTGCGGCCCTAAACATTCTCGGGTAGGCCCGCAGACCCTAAGATGT
95171 TCCTTTAGGT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 18 0.35
61 12 0.24
62 21 0.41
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.28
Consensus pattern (61 bp):
TCTTAGGTAGGCCCTGCGGCCCTAAACATTCTCGGGTAGGCCCGCAGACCCTAAGATGTGT
Found at i:99962 original size:63 final size:62
Alignment explanation
Indices: 99887--100045 Score: 201
Period size: 63 Copynumber: 2.5 Consensus size: 62
99877 TGTGTTGAAG
* ** * * *
99887 GTGCATCGATGCATATTGAGTGCATCGATGCATTAATTTTAATACAAACATCGAATGTCGTCA
1 GTGCATCGATGCATA-GGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
** **
99950 GTGCATCGATGCATAAGGAGTGCATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
100013 GTGCATCGATGCATCAGGAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCAT
100046 GCCTCCATTA
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
63 83 0.99
64 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (62 bp):
GTGCATCGATGCATAGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
Found at i:101650 original size:151 final size:148
Alignment explanation
Indices: 101419--101734 Score: 474
Period size: 151 Copynumber: 2.1 Consensus size: 148
101409 GAGTCGAGGG
* * * * *
101419 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATTTATGAGGTCTTTGAGGCACATA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTGAGACACATA
* *
101484 CTTGGTCCTTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTAGGGACATTATTAT
66 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTAGGGACATTATTAT
101549 ATGGCACTACGGTGCAAT
131 ATGGCACTACGGTGCAAT
* * *
101567 TCTACGCTGTCCTTCGGGATATATATATATATTCTGTGGAACATGTGTGAAGTC-TTGAAAGACA
1 TCTACGCGGTCCTTCGGG--ACATATATATATTCTGTGGAACATGTATGAAGTCTTTG--AGACA
*
101631 CATACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTA
62 CATACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTAGGGACATTA
101696 TTATATGGCACTACGGTGCAAT
127 TTATATGGCACTACGGTGCAAT
101718 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
101735 TGCAATTATA
Statistics
Matches: 151, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
148 17 0.11
149 3 0.02
150 29 0.19
151 102 0.68
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (148 bp):
TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTGAGACACATA
CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTAGGGACATTATTAT
ATGGCACTACGGTGCAAT
Found at i:101735 original size:23 final size:23
Alignment explanation
Indices: 101702--101746 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
101692 ATTATTATAT
*
101702 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
101725 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
101747 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:102724 original size:23 final size:23
Alignment explanation
Indices: 102698--102743 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
102688 TGAAATCAAC
*
102698 AAATTATATGTTATGTTTCAAAA
1 AAATTATATGTTATATTTCAAAA
*
102721 AAATTATATGTTATATTTTAAAA
1 AAATTATATGTTATATTTCAAAA
102744 TTTGTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (23 bp):
AAATTATATGTTATATTTCAAAA
Found at i:107476 original size:21 final size:21
Alignment explanation
Indices: 107451--107505 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
107441 TACATATATC
* *
107451 ATCATCTATTTTCTTAGCATT
1 ATCATCTATATTATTAGCATT
* *
107472 ATCATATATATTATTATCATT
1 ATCATCTATATTATTAGCATT
107493 ATC-TCTATCATTA
1 ATCATCTAT-ATTA
107506 ACATCAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.31, C:0.16, G:0.02, T:0.51
Consensus pattern (21 bp):
ATCATCTATATTATTAGCATT
Found at i:107737 original size:23 final size:23
Alignment explanation
Indices: 107691--107751 Score: 97
Period size: 23 Copynumber: 2.7 Consensus size: 23
107681 AGCTCGTATC
*
107691 ATTGCACCGAAGTG-CACGTAGA
1 ATTGCACCGTAGTGCCACGTAGA
*
107713 ATTGCACCGTAGTGCCGCGTAGA
1 ATTGCACCGTAGTGCCACGTAGA
107736 ATTGCACCGTAGTGCC
1 ATTGCACCGTAGTGCC
107752 TTATAATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (23 bp):
ATTGCACCGTAGTGCCACGTAGA
Found at i:109412 original size:63 final size:62
Alignment explanation
Indices: 109306--109464 Score: 196
Period size: 63 Copynumber: 2.5 Consensus size: 62
109296 TAATGGAGGC
** * * * *
109306 ATGCATCGATGCACTCCTGCTGCATCGATGCACTGAGGGCATTCGATGTTCATTTTATT-AGA-A
1 ATGCATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATG-T--TTGTATTCAAATA
109369 ATGCATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTTGTATTCAAATTA
1 ATGCATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTTGTATTCAAA-TA
* *
109432 ATGCATCGATGCACTTCATATGCATCGATGCAC
1 ATGCATCGATGCACTCCTTATGCATCGATGCAC
109465 CTTCAACAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
60 6 0.07
61 2 0.02
62 1 0.01
63 76 0.89
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (62 bp):
ATGCATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTTGTATTCAAATA
Found at i:109456 original size:19 final size:20
Alignment explanation
Indices: 109432--109469 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
109422 ATTCAAATTA
109432 ATGCATCGATGCA-CTTCAT
1 ATGCATCGATGCACCTTCAT
109451 ATGCATCGATGCACCTTCA
1 ATGCATCGATGCACCTTCA
109470 ACAAATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
ATGCATCGATGCACCTTCAT
Found at i:113076 original size:21 final size:21
Alignment explanation
Indices: 113039--113082 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
113029 ATTTTCTTAG
*
113039 CATTATCATATATATTATTAT
1 CATTATCATATATATTATCAT
*
113060 CATTATC-TCTATCATTATCAT
1 CATTATCATATAT-ATTATCAT
113081 CA
1 CA
113083 AATTATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.34, C:0.18, G:0.00, T:0.48
Consensus pattern (21 bp):
CATTATCATATATATTATCAT
Found at i:114966 original size:63 final size:62
Alignment explanation
Indices: 114837--114995 Score: 187
Period size: 63 Copynumber: 2.5 Consensus size: 62
114827 TAATGGAGGC
** * * * *
114837 ATGCATCGATGCACTCCTGCTGCATCGATGCACTGAGGGCATTCGATGTTCATTTTATTAGAA
1 ATGCATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTT-ATTGTATTAAAA
*
114900 ATGCATCGATGCACCCCTTATGCATCGATGCACTGACGACATTCGATG-T-TTGTATTCAAATTA
1 ATGCATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTATTGTATT-AAA--A
* *
114963 ATGCATCGATGCACTTCATATGCATCGATGCAC
1 ATGCATCGATGCACTCCTTATGCATCGATGCAC
114996 CTTCAACAAA
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
60 6 0.07
61 2 0.02
62 1 0.01
63 74 0.89
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (62 bp):
ATGCATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTATTGTATTAAAA
Found at i:114987 original size:19 final size:20
Alignment explanation
Indices: 114963--115000 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
114953 ATTCAAATTA
114963 ATGCATCGATGCA-CTTCAT
1 ATGCATCGATGCACCTTCAT
114982 ATGCATCGATGCACCTTCA
1 ATGCATCGATGCACCTTCA
115001 ACAAATTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
ATGCATCGATGCACCTTCAT
Found at i:118980 original size:2 final size:2
Alignment explanation
Indices: 118971--119001 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
118961 TTGAAAAAAT
118971 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119002 AGTTTATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:119047 original size:15 final size:15
Alignment explanation
Indices: 119029--119110 Score: 64
Period size: 15 Copynumber: 5.7 Consensus size: 15
119019 ATATAATTAT
*
119029 TATAAGCTATATGTA
1 TATAAACTATATGTA
* * *
119044 TATAAATTATGTTTA
1 TATAAACTATATGTA
*
119059 TATGAACTATA--TA
1 TATAAACTATATGTA
119072 TATAAAC--TATGTA
1 TATAAACTATATGTA
* *
119085 TATAAACTATATATG
1 TATAAACTATATGTA
*
119100 TATAAGCTATA
1 TATAAACTATA
119111 AAAAGTATAT
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
11 2 0.04
13 17 0.33
15 33 0.63
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (15 bp):
TATAAACTATATGTA
Found at i:119054 original size:13 final size:13
Alignment explanation
Indices: 119038--119094 Score: 69
Period size: 13 Copynumber: 4.2 Consensus size: 13
119028 TTATAAGCTA
*
119038 TATGTATATAAAT
1 TATGTATATAAAC
*
119051 TATGTTTATATGAAC
1 TATG--TATATAAAC
*
119066 TATATATATAAAC
1 TATGTATATAAAC
119079 TATGTATATAAAC
1 TATGTATATAAAC
119092 TAT
1 TAT
119095 ATATGTATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 27 0.73
15 10 0.27
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (13 bp):
TATGTATATAAAC
Found at i:119073 original size:28 final size:26
Alignment explanation
Indices: 119042--119098 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 26
119032 AAGCTATATG
* *
119042 TATATAAATTATGTTTATATGAACTATA
1 TATATAAACTATG--TATATAAACTATA
119070 TATATAAACTATGTATATAAACTATA
1 TATATAAACTATGTATATAAACTATA
119096 TAT
1 TAT
119099 GTATAAGCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 15 0.56
28 12 0.44
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (26 bp):
TATATAAACTATGTATATAAACTATA
Found at i:119103 original size:28 final size:28
Alignment explanation
Indices: 119006--119109 Score: 77
Period size: 28 Copynumber: 3.5 Consensus size: 28
118996 TATATAAGTT
* *
119006 TATATTATAAACTATATAATTATTATAAGCTA
1 TATATTATAAAC--TAT-GTTA-TATAAACTA
* * *
119038 TATGTATATAAATTATGTTTATATGAACTA
1 TATAT-TATAAACTATG-TTATATAAACTA
119068 TATA-TATAAACTATG-TATATAAACTA
1 TATATTATAAACTATGTTATATAAACTA
*
119094 TATATGTATAAGCTAT
1 TATAT-TATAAACTAT
119110 AAAAAGTATA
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
26 14 0.24
28 19 0.32
30 10 0.17
31 6 0.10
32 4 0.07
33 6 0.10
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (28 bp):
TATATTATAAACTATGTTATATAAACTA
Found at i:119316 original size:14 final size:14
Alignment explanation
Indices: 119294--119333 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
119284 TCTAAATCCT
119294 AACCTCTAAACTTTA
1 AACC-CTAAACTTTA
*
119309 AACCCTAAACCTTA
1 AACCCTAAACTTTA
119323 AACCCTAAACT
1 AACCCTAAACT
119334 ATGTATGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.25
Consensus pattern (14 bp):
AACCCTAAACTTTA
Found at i:119331 original size:21 final size:21
Alignment explanation
Indices: 119285--119332 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
119275 AAATCAATCT
* *
119285 CTAAATCCTAACCTCTAAACT
1 CTAAACCCTAACCTCTAAACC
*
119306 TTAAACCCTAAACCT-TAAACC
1 CTAAACCCT-AACCTCTAAACC
119327 CTAAAC
1 CTAAAC
119333 TATGTATGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.25
Consensus pattern (21 bp):
CTAAACCCTAACCTCTAAACC
Found at i:119381 original size:20 final size:20
Alignment explanation
Indices: 119356--119395 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
119346 TATAGTACAT
119356 GTATATATAAACTATGTATA
1 GTATATATAAACTATGTATA
119376 GTATATATAAACTATGTATA
1 GTATATATAAACTATGTATA
119396 TATGTTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (20 bp):
GTATATATAAACTATGTATA
Found at i:119850 original size:2 final size:2
Alignment explanation
Indices: 119843--119867 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
119833 ACTCATTTGA
119843 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
119868 AACTATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121796 original size:7 final size:7
Alignment explanation
Indices: 121786--121826 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
121776 ACTCTAAATT
121786 CTAAACC
1 CTAAACC
121793 CTAAACC
1 CTAAACC
121800 CTAAACC
1 CTAAACC
* * *
121807 TTATATC
1 CTAAACC
121814 CTAAACC
1 CTAAACC
121821 CTAAAC
1 CTAAAC
121827 TATATATGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:121796 original size:14 final size:14
Alignment explanation
Indices: 121774--121825 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
121764 TAGTTTATAA
* *
121774 AAACTCTAAATTCT
1 AAACCCTAAATCCT
*
121788 AAACCCTAAACCCT
1 AAACCCTAAATCCT
* *
121802 AAACCTTATATCCT
1 AAACCCTAAATCCT
121816 AAACCCTAAA
1 AAACCCTAAA
121826 CTATATATGT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (14 bp):
AAACCCTAAATCCT
Found at i:122024 original size:20 final size:19
Alignment explanation
Indices: 121989--122068 Score: 74
Period size: 18 Copynumber: 4.3 Consensus size: 19
121979 CTTATAGTAC
* * *
121989 ATATATGTATAAACTATGT
1 ATATATATAAAAACTATAT
122008 ATAGTATATAAAAACTATAT
1 ATA-TATATAAAAACTATAT
* *
122028 ATATATATATATA-TATAT
1 ATATATATAAAAACTATAT
* *
122046 ATATATATATATA-TATAT
1 ATATATATAAAAACTATAT
122064 ATATA
1 ATATA
122069 CATATAGTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
18 28 0.51
19 11 0.20
20 16 0.29
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.44
Consensus pattern (19 bp):
ATATATATAAAAACTATAT
Found at i:122028 original size:2 final size:2
Alignment explanation
Indices: 122023--122087 Score: 103
Period size: 2 Copynumber: 32.0 Consensus size: 2
122013 ATATAAAAAC
122023 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
122065 TA TA CA TA TA GTA TA TG TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA
122088 AACAATCTAT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
2 56 0.97
3 2 0.03
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:122152 original size:21 final size:20
Alignment explanation
Indices: 122128--122218 Score: 58
Period size: 21 Copynumber: 4.3 Consensus size: 20
122118 ATATGTAACC
122128 TATAGTTTATAAACAATAGTT
1 TATA-TTTATAAACAATAGTT
**
122149 TATA-TTAGTGTACTATATAGTT
1 TATATTTA-TAAAC-A-ATAGTT
* * *
122171 TATACTTTATAACCTATAGTA
1 TATA-TTTATAAACAATAGTT
* *
122192 TATAATTTATAAACTATAATT
1 TAT-ATTTATAAACAATAGTT
122213 TATATT
1 TATATT
122219 AATGTACCAT
Statistics
Matches: 54, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
19 3 0.06
20 6 0.11
21 29 0.54
22 11 0.20
23 2 0.04
24 3 0.06
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (20 bp):
TATATTTATAAACAATAGTT
Found at i:122236 original size:22 final size:21
Alignment explanation
Indices: 122143--122245 Score: 75
Period size: 22 Copynumber: 4.8 Consensus size: 21
122133 TTTATAAACA
* *
122143 ATAGTTTATATTAGTGTACTAT
1 ATAGTTTATATTAATGTAC-CT
* *
122165 ATAGTTTATACTTTAT-AACCT
1 ATAGTTTATA-TTAATGTACCT
* * * *
122186 ATAGTATATAATTTAT-AAACT
1 ATAGTTTAT-ATTAATGTACCT
*
122207 ATAATTTATATTAATGTACCAT
1 ATAGTTTATATTAATGTACC-T
122229 ATAGTTTATATTAATGT
1 ATAGTTTATATTAATGT
122246 TAATTATCTT
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
20 5 0.08
21 27 0.42
22 30 0.46
23 3 0.05
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.48
Consensus pattern (21 bp):
ATAGTTTATATTAATGTACCT
Found at i:122371 original size:21 final size:21
Alignment explanation
Indices: 122261--122364 Score: 77
Period size: 21 Copynumber: 4.8 Consensus size: 21
122251 ATCTTAACTG
* *
122261 TAATTTATATTAATATATTATA
1 TAATTTATA-AAATATACTATA
* *
122283 TAGTTTATAAGCTATATACTATA
1 TAATTTATAA--AATATACTATA
* *
122306 TTAA--TATAAATTATATTAACTA
1 -TAATTTATAAAATATACT-A-TA
*
122328 TAATTTATAAACTATACTATA
1 TAATTTATAAAATATACTATA
122349 TAATTTATAAAATATA
1 TAATTTATAAAATATA
122365 GTTTATATTA
Statistics
Matches: 64, Mismatches: 11, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
20 5 0.08
21 21 0.33
22 16 0.25
23 20 0.31
24 2 0.03
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (21 bp):
TAATTTATAAAATATACTATA
Found at i:122401 original size:31 final size:31
Alignment explanation
Indices: 122352--122414 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
122342 TACTATATAA
122352 TTTATAAAATATAGTTTATATTAATATTAAT
1 TTTATAAAATATAGTTTATATTAATATTAAT
* * *
122383 TTTATAGACTATATTTTATATTAATATTAAT
1 TTTATAAAATATAGTTTATATTAATATTAAT
122414 T
1 T
122415 ACAAATTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (31 bp):
TTTATAAAATATAGTTTATATTAATATTAAT
Found at i:122455 original size:21 final size:20
Alignment explanation
Indices: 122429--122477 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
122419 ATTATAAACT
122429 ATATTATATTAA-TATAAGTTA
1 ATATTATATTAATTAT-A-TTA
122450 ATATTAATATTAATTATATTA
1 ATATT-ATATTAATTATATTA
122471 ATATTAT
1 ATATTAT
122478 TAATATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 2 0.08
21 13 0.50
22 8 0.31
23 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
ATATTATATTAATTATATTA
Found at i:122456 original size:6 final size:6
Alignment explanation
Indices: 122429--122509 Score: 51
Period size: 6 Copynumber: 15.2 Consensus size: 6
122419 ATTATAAACT
*
122429 ATATT- ATATTA ATA-TA A-GTTA ATATTA ATATT- A-ATT- ATATTA
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
122471 ATA-T- -TATTA ATATTA AT-TATA ATATATA AT-TT- ATATTA A
1 ATATTA ATATTA ATATTA ATAT-TA ATAT-TA ATATTA ATATTA A
122510 GGGCGGAAAC
Statistics
Matches: 62, Mismatches: 2, Indels: 23
0.71 0.02 0.26
Matches are distributed among these distances:
3 2 0.03
4 7 0.11
5 20 0.32
6 27 0.44
7 6 0.10
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (6 bp):
ATATTA
Found at i:122483 original size:24 final size:23
Alignment explanation
Indices: 122418--122509 Score: 86
Period size: 24 Copynumber: 4.1 Consensus size: 23
122408 ATTAATTACA
122418 AATTATAA-ACTA-TATT-ATATT
1 AATTATAATA-TATTATTAATATT
*
122439 AA-TATAAGT-TAATATTAATATT
1 AATTATAA-TATATTATTAATATT
*
122461 AATTATATTAATATTATTAATATT
1 AATTATAAT-ATATTATTAATATT
* *
122485 AATTATAATATATAATTTATATT
1 AATTATAATATATTATTAATATT
122508 AA
1 AA
122510 GGGCGGAAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 12
0.78 0.07 0.16
Matches are distributed among these distances:
20 7 0.12
21 6 0.10
22 8 0.14
23 18 0.31
24 20 0.34
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (23 bp):
AATTATAATATATTATTAATATT
Found at i:122734 original size:23 final size:24
Alignment explanation
Indices: 122707--122760 Score: 92
Period size: 23 Copynumber: 2.3 Consensus size: 24
122697 TTATTTTTTC
*
122707 TTTACATAAATTAAACTATA-TAA
1 TTTACATAAACTAAACTATATTAA
122730 TTTACATAAACTAAACTATATTAA
1 TTTACATAAACTAAACTATATTAA
122754 TTTACAT
1 TTTACAT
122761 TTAATCATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 19 0.66
24 10 0.34
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTACATAAACTAAACTATATTAA
Found at i:123017 original size:15 final size:15
Alignment explanation
Indices: 122997--123025 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
122987 TGATAATATA
122997 TAAGTTAGGTAAATT
1 TAAGTTAGGTAAATT
123012 TAAGTTAGGTAAAT
1 TAAGTTAGGTAAAT
123026 ATCAGACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (15 bp):
TAAGTTAGGTAAATT
Found at i:123110 original size:16 final size:16
Alignment explanation
Indices: 123059--123110 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
123049 CGGATCATTT
123059 ACATGTCAGGTTAAAA
1 ACATGTCAGGTTAAAA
* * **
123075 ACAGGTCAGGTTCATC
1 ACATGTCAGGTTAAAA
*
123091 ACATGTCAGGTTGAAA
1 ACATGTCAGGTTAAAA
123107 ACAT
1 ACAT
123111 ATCGGGTAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (16 bp):
ACATGTCAGGTTAAAA
Found at i:129638 original size:17 final size:18
Alignment explanation
Indices: 129605--129638 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
129595 TCAATTCTGT
*
129605 CTTATTATTTAATTCCAA
1 CTTATCATTTAATTCCAA
129623 CTTATCATTT-ATTCCA
1 CTTATCATTTAATTCCA
129639 GACCTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
CTTATCATTTAATTCCAA
Found at i:133730 original size:12 final size:13
Alignment explanation
Indices: 133709--133767 Score: 52
Period size: 12 Copynumber: 4.7 Consensus size: 13
133699 AAAGTCAAAT
*
133709 TAATAGTAAT-AA
1 TAATAATAATAAA
133721 TAATAATAATAAA
1 TAATAATAATAAA
* *
133734 TGA-AACAATAAA
1 TAATAATAATAAA
*
133746 TGAACAATAAT-AA
1 T-AATAATAATAAA
133759 TAATAATAA
1 TAATAATAA
133768 AATTAACAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
12 25 0.66
13 8 0.21
14 5 0.13
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.27
Consensus pattern (13 bp):
TAATAATAATAAA
Found at i:138986 original size:323 final size:318
Alignment explanation
Indices: 138367--139691 Score: 1682
Period size: 323 Copynumber: 4.2 Consensus size: 318
138357 CAGAGAAATA
*
138367 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGGTGTTCTCTTGAAT-----AG-A---
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAAGAAGGT
* * *
138423 GATGAAGTATAGGAGGTAATTATGATTGGTTTCAGCCTCAATGTTTTCTTGGTGTAGCTAGTCTT
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTCAT-G-GT-GC-AG-CTT
* * * * *
138488 -TTTCTGCTGTGCCGAACATCTGAGGGTTGTTTGGCTGAATGAATTTACAACTTCCTACATTCTG
126 ATTTGTGTTGTGCCGAACATCTG-GGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTA
*
138552 ATTCATTCTCTATTCTTACAAGTTATAACTCCAATTTCACATCTCTCCACAAATAATGGTGGCCA
190 ATTCATTCTCTATTCTT---A-TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCA
** * *
138617 AATGATTTTCAGCATATAGGGAATCTATG-TCCTGAGTACCAAAATAATATTTTTTCTTTGTAAT
251 AATGATTTTCAGCATATAGGGAATCGGTGTTCC-GAGCACCAAAAGAATATTTTTTCTTTGTAAT
*
138681 ATTC
315 ATCC
* *
138685 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAAAAGAAGGG
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAAGAAGGT
*
138750 GATGAAGTATAAGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTC-TGGTGCAGCTTATTT
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATG-TTTTCATGGTGCAGCTTATTT
*
138814 GTGTTGTGCCGAACATCTGGGGATTGTTTGGCTGAATGAATATACAACCTCCTACTTTCTAATTC
130 GTGTTGTGCCGAACATCTGGGG-TTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTC
* *** *
138879 ATTCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGACAATGGTCAAATG
194 ATTCTCTATTC-T-T-A-TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
* * * * * *
138944 ATTTTTAGCAAATAGGAAATCGGTGTTCCGAGCACAAAAATAATATTTTTTTCTTTGTAATATCT
255 ATTTTCAGCATATAGGGAATCGGTGTTCCGAGCACCAAAAGAATA-TTTTTTCTTTGTAATATCC
* * *
139009 TATTTGAAACTTTTTTTTTCCTATAAGCAATAAGTATAGAGATGTTCTCTTAAATAGAGAGGAAG
1 TATTTGAAAC-TTTCTTTT-CTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAAGAAG
* ** * *
139074 GTGATGAAGTATAGGAGGTAATTATGATTGGTTTCAAACTTGATGTTTTCATGGTGCAGCCTATT
64 GTGATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTCATGGTGCAGCTTATT
* * * * * *
139139 TATGTTGTGTCAAACATCTTGGGTTGTTTGGCTAAATGAATATACAACTTACTACTTTCTAATTC
129 TGTGTTGTGCCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTC
* * *
139204 ATTGTCTA---TTATTATAACTTCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATAATTT
194 ATTCTCTATTCTTATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTT
* * * *
139266 TCAGCATATAGGGAATAGGTGTACCGAGTACCAAAAGAAT-TTGTTTTCTTTGAAATATCC
259 TCAGCATATAGGGAATCGGTGTTCCGAGCACCAAAAGAATATT-TTTTCTTTGTAATATCC
* * * * * *
139326 TTTTTGGAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGAGGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAAGAAGGT
* *
139391 GATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCCTGGTGCAG-TCTATTT
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTCATGGTGCAGCT-TATTT
* * * *
139455 GTGTTGTGCCGGACATCTGGAGGTTGATTGGCTGAATGAATATACAACTTCCTACTTTTTGATTC
130 GTGTTGTGCCGAACATCTGG-GGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTC
139520 ATTCTCTATTC---TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTT
194 ATTCTCTATTCTTATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTT
** * * *
139582 TCAATAGATAGGGGAGTTGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCC
259 TCAGCATATA-GGGAATCGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCC
139643 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTT
139692 TATGATTGGT
Statistics
Matches: 879, Mismatches: 101, Indels: 55
0.85 0.10 0.05
Matches are distributed among these distances:
315 115 0.13
316 111 0.13
317 109 0.12
318 130 0.15
319 1 0.00
320 1 0.00
321 1 0.00
322 6 0.01
323 150 0.17
324 34 0.04
325 61 0.07
326 114 0.13
327 41 0.05
328 5 0.01
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (318 bp):
TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAAGAAGGT
GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTCATGGTGCAGCTTATTTG
TGTTGTGCCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCAT
TCTCTATTCTTATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTTTC
AGCATATAGGGAATCGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCC
Found at i:139297 original size:641 final size:631
Alignment explanation
Indices: 138367--139691 Score: 1767
Period size: 641 Copynumber: 2.1 Consensus size: 631
138357 CAGAGAAATA
* *
138367 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGGTGTTCTCTTGAATAGAGATGAAGTA
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTAAATAGAGATGAAGTA
** * * * *
138432 TAGGAGGTAATTATGATTGGTTTCAGCCTCAATGTTTTCTTGGTGTAGCTAGTCTTTTTCTGCTG
66 TAGGAGGTAATTATGATTGGTTTCAAACTCAATGTTTTCATGGTGTAGCTAGCCTATTTATGCTG
* * * * *
138497 TGCCGAACATCTGAGGGTTGTTTGGCTGAATGAATTTACAACTTCCTACATTCTGATTCATTCTC
131 TGCCAAACATCTGAGGGTTGTTTGGCTAAATGAATATACAACTTACTACATTCTAATTCATTCTC
*
138562 TATTCTTACAAGTTATAACTCCAATTTCACATCTCTCCACAAATAATGGTGGCCAAATGATTTTC
196 TA-T-TT--AAGTTATAACTCCAATTTCACATCTCTCCACAAATAATGGTGGCCAAATAATTTTC
** * * *
138627 AGCATATAGGGAATCTATGTCCTGAGTACCAAAATAATATT-TTTTCTTTGTAATATTCTATTTG
257 AGCATATAGGGAATAGATGTCCTGAGTACCAAAAGAAT-TTGTTTTCTTTGAAATATCCTATTTG
138691 AAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAAAAGAAGGGGATGAA
321 AAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAAAAGAAGGGGATGAA
*
138756 GTATAAGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTCTGGTGCAG-CTTATTTGTGTTG
386 GTATAAGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTCCTGGTGCAGTC-TATTTGTGTTG
*
138820 TGCCGAACATCTGG-GGATTGTTTGGCTGAATGAATATACAACCTCCTACTTTCTAATTCATTCT
450 TGCCGAACATCTGGAGG-TTGATTGGCTGAATGAATATACAACCTCCTACTTTCTAATTCATTCT
* *
138884 CTATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGACAATGGTCAAATGATTTT
514 CTATTC-------TTATAACTCCAATTTCACATCTCTCCACAAATGACAATGGCCAAATGATTTT
* * * *
138949 TAGCAAATA-GGAAATCGGTGTTCCGAGCACAAAAATAATATTTTTTTCTTTGTAATATCT
572 CAACAAATAGGGAAATCGGTGTTCCGAGCACAAAAAGAATA-TTTTTTCTTTGTAATATCC
*
139009 TATTTGAAACTTTTTTTTTCCTATAAGCAATAAGTATAGAGATGTTCTCTTAAATAGAGAGGAAG
1 TATTTGAAAC-TTTCTTTT-CTATAAGCAATAAGTATAGAGATGTTCTCTTAAAT----A-G-A-
**
139074 GTGATGAAGTATAGGAGGTAATTATGATTGGTTTCAAACTTGATGTTTTCAT-G-GT-GC-AGCC
57 --GATGAAGTATAGGAGGTAATTATGATTGGTTTCAAACTCAATGTTTTCATGGTGTAGCTAGCC
* * * *
139135 TATTTATGTTGTGTCAAACATCT-TGGGTTGTTTGGCTAAATGAATATACAACTTACTACTTTCT
120 TATTTATGCTGTGCCAAACATCTGAGGGTTGTTTGGCTAAATGAATATACAACTTACTACATTCT
* * *
139199 AATTCATTGTCTA-TT-A-TTATAACTTCAATTTCACATCTCTCCACAAATGATGGTGGCCAAAT
185 AATTCATTCTCTATTTAAGTTATAACTCCAATTTCACATCTCTCCACAAATAATGGTGGCCAAAT
*
139261 AATTTTCAGCATATAGGGAATAGGTGTACC-GAGTACCAAAAGAATTTGTTTTCTTTGAAATATC
250 AATTTTCAGCATATAGGGAATAGATGT-CCTGAGTACCAAAAGAATTTGTTTTCTTTGAAATATC
* * * * * * *
139325 CTTTTTGGAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGAGGAAGG
314 CTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAAAAGAAGG
* * *
139390 TGATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCCTGGTGCAGTCTATTT
379 GGATGAAGTATAAGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTCCTGGTGCAGTCTATTT
* * * *
139455 GTGTTGTGCCGGACATCTGGAGGTTGATTGGCTGAATGAATATACAACTTCCTACTTTTTGATTC
444 GTGTTGTGCCGAACATCTGGAGGTTGATTGGCTGAATGAATATACAACCTCCTACTTTCTAATTC
***
139520 ATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTTTCA
509 ATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGACAATGGCCAAATGATTTTCA
* * * * * *
139585 ATAGATAGGGGAGTTGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCC
574 ACAAATAGGGAAATCGGTGTTCCGAGCACAAAAAGAATATTTTTTCTTTGTAATATCC
139643 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTT
139692 TATGATTGGT
Statistics
Matches: 605, Mismatches: 62, Indels: 42
0.85 0.09 0.06
Matches are distributed among these distances:
632 31 0.05
633 7 0.01
634 80 0.13
635 26 0.04
640 2 0.00
641 280 0.46
642 16 0.03
643 7 0.01
644 33 0.05
645 2 0.00
648 48 0.08
649 22 0.04
650 3 0.00
651 2 0.00
652 1 0.00
653 45 0.07
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (631 bp):
TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTAAATAGAGATGAAGTA
TAGGAGGTAATTATGATTGGTTTCAAACTCAATGTTTTCATGGTGTAGCTAGCCTATTTATGCTG
TGCCAAACATCTGAGGGTTGTTTGGCTAAATGAATATACAACTTACTACATTCTAATTCATTCTC
TATTTAAGTTATAACTCCAATTTCACATCTCTCCACAAATAATGGTGGCCAAATAATTTTCAGCA
TATAGGGAATAGATGTCCTGAGTACCAAAAGAATTTGTTTTCTTTGAAATATCCTATTTGAAACT
TTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAAAAGAAGGGGATGAAGTATA
AGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTCCTGGTGCAGTCTATTTGTGTTGTGCCGA
ACATCTGGAGGTTGATTGGCTGAATGAATATACAACCTCCTACTTTCTAATTCATTCTCTATTCT
TATAACTCCAATTTCACATCTCTCCACAAATGACAATGGCCAAATGATTTTCAACAAATAGGGAA
ATCGGTGTTCCGAGCACAAAAAGAATATTTTTTCTTTGTAATATCC
Found at i:143973 original size:23 final size:23
Alignment explanation
Indices: 143943--143994 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
143933 GGTAATTATG
143943 ACTGGTTTCAGCCTCGATGTTTT
1 ACTGGTTTCAGCCTCGATGTTTT
143966 ACTGGTTTCAGCCTCGATGTTTT
1 ACTGGTTTCAGCCTCGATGTTTT
*
143989 TCTGGT
1 ACTGGT
143995 GCAGCCTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.12, C:0.21, G:0.23, T:0.44
Consensus pattern (23 bp):
ACTGGTTTCAGCCTCGATGTTTT
Found at i:144593 original size:319 final size:317
Alignment explanation
Indices: 143526--144781 Score: 1141
Period size: 319 Copynumber: 3.8 Consensus size: 317
143516 CAGAGAAATA
* * * *
143526 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGGGATGTTCTCTTGAATAGAGATG-AAGG
1 TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGA-GAAAGG
* *
143590 TGATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTCTTGGTGTAGCTAGCCT
65 TAATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCTT-G-GT-GC-AGCCT
* * * * * * * * *
143655 GTTTCTGCTGTGCCGAACATCT-GAGGTTGTTTGGCTGAATGAATTTTACAACTTCCTACATTCT
126 ATTTGTGTTATGTCGGACATCTGGAGGTTGTTTGGCTGAATGAA-TATACAACTTCATACTTTCT
* * * **
143719 GATTCATTCTCTATTCTTATAAGTTATAACTCTAATTTCATATCTCTCCACAAATGACGGTGGCC
190 AATTCATTCTCTA----T-T-A-TTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCC
* * * * * * ** *
143784 AAATGATTTTCAGCATATAGGGAATCAATG-TCCTGAGCACCAAAATAAAAAATTTTTGTTTGTA
248 AAATGATTTTCAGTAGATAGGAAATCGATGTTCC-AAGCACCAAAATAATATTTTTTTCTTTGTA
* *
143848 ATTTTC
312 ATATAC
* * * *
143854 TATTTGGAACTTTCTTTTCTATAAGCAATAAGTATAGAGATCTTCTCTTGAATAGA-A-AAGCAG
1 TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGAGAA--AG
*** * *
143917 GGGGTGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTAC-TGGTTTCAGCCTC
64 GTAATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTT-CTTGG-TGCAGCCT-
* * * * * * * ** **
143981 GATGTT-T-TTCTGGTGCAGCCTAT-TTGTGCTATACCGAATATCTGGGGGTTGTTTGGCTGA-A
126 -AT-TTGTGTTAT-GT-CGGAC-ATCTGGAGGT-T---G--T-T-T---GGCTGAATGAAT-ATA
* * *
144042 TGAATTTACA-AC-TTCGTACTTTCTAATTCATTCTCTATTATTATAATTTATAACTCCAATTTC
174 -CAACTT-CATACTTTC-TA-ATTC--ATT----CTC---TA-T-T-A-TTATAACTCCAATTTC
* * * * * * *
144105 ACATCTATTCACAAATGACAATGGTCAAATGATTTTCAGCAGATAGGAAATCGATGTTCCGAGCA
222 ACATCTCTCCACAAATGATAGTGGCCAAATGATTTTCAGTAGATAGGAAATCGATGTTCCAAGCA
*
144170 CCAAAATAATATTTTTTTCTTTGTAATATCC
287 CCAAAATAATATTTTTTTCTTTGTAATATAC
*
144201 TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGATAAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGAGAAAGGT
* * * *
144266 GATGAAGTATATGAGGTAATTATGATTGGTTTCATCCTCGATGTTTTCTTGGTGCAACCTATTTG
66 AATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCTTGGTGCAGCCTATTTG
* * *
144331 TGTTATGTCGGACATCTGGAGGTTGTTTGACTGAATGAATATACGACTTCATACTTTCTGATTCA
131 TGTTATGTCGGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCATACTTTCTAATTCA
*
144396 TTCTCTATTATTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATAATTTTCAG
196 TTCTCTATTATTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGATTTTCAG
* * *
144461 TAGATAGGGAATCGGTGTTTCAAGCACCAAAATAATATTTTTTTTTCTTTGTAATATAC
261 TAGATAGGAAATCGATGTTCCAAGCACCAAAATAATA--TTTTTTTCTTTGTAATATAC
*
144520 TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGAGGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGAGAAAGGT
* * * **
144585 AATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCCTGGTACAGTCTAAGTG
66 AATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCTTGGTGCAGCCTATTTG
* * * *
144650 TGTTGTGTCGGACATCTGGAGGTTGTTTGGCTGAGTGAATATACAACTTCCTACTTTCTTATTCA
131 TGTTATGTCGGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCATACTTTCTAATTCA
* * * *
144715 TTCTCTATTCTTATAACTCCAATTTCACATATCTCCACAAATGATGGTGCCCAAATGATTTTCAG
196 TTCTCTATTATTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGATTTTCAG
144780 TA
261 TA
144782 AAATATTTAA
Statistics
Matches: 774, Mismatches: 105, Indels: 107
0.78 0.11 0.11
Matches are distributed among these distances:
317 81 0.10
318 1 0.00
319 260 0.34
320 1 0.00
321 2 0.00
324 3 0.00
325 5 0.01
326 5 0.01
327 6 0.01
328 111 0.14
329 6 0.01
330 6 0.01
331 7 0.01
332 10 0.01
333 1 0.00
335 2 0.00
336 2 0.00
337 2 0.00
339 6 0.01
340 13 0.02
341 4 0.01
342 3 0.00
343 12 0.02
344 5 0.01
345 3 0.00
346 7 0.01
347 202 0.26
348 4 0.01
349 2 0.00
350 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (317 bp):
TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGAGAAAGGT
AATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCTTGGTGCAGCCTATTTG
TGTTATGTCGGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCATACTTTCTAATTCA
TTCTCTATTATTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGATTTTCAG
TAGATAGGAAATCGATGTTCCAAGCACCAAAATAATATTTTTTTCTTTGTAATATAC
Found at i:147090 original size:169 final size:169
Alignment explanation
Indices: 146811--147156 Score: 665
Period size: 169 Copynumber: 2.0 Consensus size: 169
146801 GGTTTCATCT
146811 TCGATGTTTTCCTGGTGCAGCCTATTTGTGTTGTGCCGAACATCTGGAGGTTGTTTGACTGAATG
1 TCGATGTTTTCCTGGTGCAGCCTATTTGTGTTGTGCCGAACATCTGGAGGTTGTTTGACTGAATG
*
146876 AATATACGACTTCCTACTTTTTGATTAATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCA
66 AATATACGACTTCCTACTTTCTGATTAATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCA
146941 CGAATGATGGTGGCCAAATGATTTTCAGTAAATAGGGAG
131 CGAATGATGGTGGCCAAATGATTTTCAGTAAATAGGGAG
* *
146980 TCGATGTTTTCCTGGTGCAGCCTATTTGTGTTGTGCCGGACATCTGGATGTTGTTTGACTGAATG
1 TCGATGTTTTCCTGGTGCAGCCTATTTGTGTTGTGCCGAACATCTGGAGGTTGTTTGACTGAATG
147045 AATATACGACTTCCTACTTTCTGATTAATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCA
66 AATATACGACTTCCTACTTTCTGATTAATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCA
147110 CGAATGATGGTGGCCAAATGATTTTCAGTAAATAGGGAG
131 CGAATGATGGTGGCCAAATGATTTTCAGTAAATAGGGAG
147149 TCGATGTT
1 TCGATGTT
147157 CCGATCACCA
Statistics
Matches: 174, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
169 174 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (169 bp):
TCGATGTTTTCCTGGTGCAGCCTATTTGTGTTGTGCCGAACATCTGGAGGTTGTTTGACTGAATG
AATATACGACTTCCTACTTTCTGATTAATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCA
CGAATGATGGTGGCCAAATGATTTTCAGTAAATAGGGAG
Found at i:151760 original size:323 final size:323
Alignment explanation
Indices: 151080--152730 Score: 2052
Period size: 323 Copynumber: 5.1 Consensus size: 323
151070 TGAGAATATA
* * * *
151080 TATTTGGAACTTTCTTTTCTATAAGCAATAAGTATATAGATGTTCTCTTGAATAGAGATGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* *
151145 GATGAAGTATAGGAGGTAATTATGAATGGTTTCAACCTCGATGTTTTCTTGGTGTAGCCAGCCTA
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGT----AGCCTA
* * * * * *
151210 TTTCTGCTGTGCCGAACATCTGAGGGTTTTTTGGCTGAATGAATATGCAACTTCCTATTTTCTGA
127 TTTGTGTTGTGCCGAACATCTG-GGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAA
* * * * * ** *
151275 TTCATTCTCTAGTATTATAAGTTATAACTCAAATTTCATATCTCTCCACATTTGATGGTGGCCAA
191 TTCATTCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAA
** *
151340 ATGATTTTTCAATAGATAGGGAATCTATGTCCCGAGCACCAAAATAATA--TTTTTTCTTTGTAA
256 ATGA-TTTTCAATAGATA-GGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAA
*
151403 TATTC
319 TATCC
* * * *
151408 TATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAGAAAGGG
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* ** * *
151473 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTTTAGTGTATCCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGTAGCCTATTTG
**
151538 TGTTGTGCTAAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCAT
131 TGTTGTGCCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCAT
* * * *
151603 TCTTTATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGGTAATGGCCAAATGAT
196 TCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGAT
** ** * *
151668 TTTCAGCAGAT-CCAATCGATGTTTCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATCC
261 TTTCAATAGATAGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATCC
* * *
151730 TATTTGAAACTTTTTTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTAAATAGAGAGGAAGG
1 TATTTGAAAC-TTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGG
* * * * * ** *
151795 TGATGAAGTATAGGAGGTAATTATAACTGGTTTCAAACTTGATATTTTCCCGGTACAACCTATTT
65 TGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGTAGCCTATTT
** *
151860 GTAATGTGCCGAACATCTGGGGGTTGTTTGGCTGAATGAATATACAATTTCCTACTTTCTAATTC
130 GTGTTGTGCCGAACATCT-GGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTC
* * *
151925 ATTCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGACAATGGCCAAATG
194 ATTCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATG
* * *
151990 ACTTTCAGTAGATAGGGAATCGGTGTTCCAAGCACCAAAATAATA---TTTTT-TTTGTAATATC
259 ATTTTCAATAGATA-GGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATC
152051 C
323 C
*
152052 TATTTGAAACTTT-TTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATATAGAGGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* * * *
152116 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTTGACGTTTTCCTGGTGTGGCCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGTAGCCTATTTG
* * * * *
152181 TGTTGTGTCGAACATTTGAGCTTGTTTGGCTAAATGAATATACAACTTCCTACTTTCTAATTCAT
131 TGTTGTGCCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCAT
* * * *
152246 TCTCTA----T-T-A-TTATAACTCCAATTTCACATCTCTACGCAAATGATTGTGGCCAAATAAT
196 TCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGAT
* * * ** *
152304 TTTCAACAGACAGGGAATCGGTGTTTCGAGCAATAAAATAATATTTTTTTTCTTTGTAAAATCCC
261 TTTCAATAGATA-GGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAATAT-CC
* * * * * * *
152369 TATTTGGAACTTTCTTTTCTATAAGTATTATGTATAGAGATTTTTTCTTGAATAGAGGGGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* * * *
152434 GATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTGCCTGGTGCAGTCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGTAGCCTATTTG
* *
152499 TGTTGTG-CAAGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTC
131 TGTTGTGCCGA-ACATCTGG-GGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTC
* *
152563 ATTTTCTATTC-------TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
194 ATTCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATG
*
152621 ATTTTCAATAAATAGGAAGTCGGTGTTCCGAGCACCAAAATAATATTTTTTTTTCTTTGTAATAT
259 ATTTTCAATAGATAGGAA-TCGGTGTTCCGAGCACCAAAATAATA-TTTTTTTTCTTTGTAATAT
152686 CC
322 CC
* * * *
152688 TATTTAAAATTTTCTTTTCTATAAGCAATAATTATAGAGATGT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGT
152731 CTTTATGATT
Statistics
Matches: 1155, Mismatches: 149, Indels: 47
0.85 0.11 0.03
Matches are distributed among these distances:
312 78 0.07
313 1 0.00
314 1 0.00
315 6 0.01
316 9 0.01
317 16 0.01
318 118 0.10
319 212 0.18
320 161 0.14
321 3 0.00
322 59 0.05
323 215 0.19
324 141 0.12
326 25 0.02
328 110 0.10
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (323 bp):
TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGTAGCCTATTTG
TGTTGTGCCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCAT
TCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGAT
TTTCAATAGATAGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATCC
Found at i:152543 original size:638 final size:640
Alignment explanation
Indices: 151080--152730 Score: 2157
Period size: 638 Copynumber: 2.6 Consensus size: 640
151070 TGAGAATATA
* * *
151080 TATTTGGAACTTTCTTTTCTATAAGCAATAAGTATATAGATGTTCTCTTGAATAGAGATGAAGGT
1 TATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTGAATAGAGAGGAAGGT
* *
151145 GATGAAGTATAGGAGGTAATTATGAATGGTTTCAACCTCGATGTTTTCTTGGTGTAGCCAGCCTA
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCT-G-GT-G-CAGCCTA
* * * * *
151210 TTTCTGCTGTGCCGAACATCT-GAGGGTTTTTTGGCTGAATGAATATGCAACTTCCTATTTTCTG
127 TTTGTGATGTGCCGAACATCTGGA-GGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTG
* * * * **
151274 ATTCATTCTCTAGTATTATAAGTTATAACTCAAATTTCATATCTCTCCACATTTGATGGTGGCCA
191 ATTCATTCTCTATTCTTATAA-TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCA
** *
151339 AATGATTTTTCAATAGATAGGGAATCTATGTCCCGAGCACCAAAATAATATTTTTTCTTTGTAAT
255 AATGA-TTTTCAATAGATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAAT
* *
151404 ATTCTATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAGAA
319 ATCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAGAA
** * ** *
151469 AGGGGATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTTTAGTGTATCCTA
384 AGGGGATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTCGACGTTTTCCTAGTGTAGCCTA
* * *
151534 TTTGTGTTGTGCTAAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAAT
449 TTTGTGTTGTGCTAAACATCTGAGCTTGTTTGGCTAAATGAATATACAACTTCCTACTTTCTAAT
* *
151599 TCATTCTTTATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGGTAATGGCCAAA
514 TCATTC----TTCTTATAATTTATAACTCCAATTTCACATCTCTACACAAATGATAATGGCCAAA
* * * *
151664 TGATTTTCAGCAGATCCAATCGATGTTTCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATC
575 TAATTTTCAACAGATCCAATCGATGTTTCGAGCAACAAAATAATATTTTTTTTCTTTGTAAAATC
151729 C
640 C
* * *
151730 TATTTGAAACTTTTTTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTAAATAGAGAGGAAGG
1 TATTTGGAAC-TTTCTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTGAATAGAGAGGAAGG
* * * * * * *
151795 TGATGAAGTATAGGAGGTAATTATAACTGGTTTCAAACTTGATATTTTCCCGGTACAACCTATTT
65 TGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGCCTATTT
* * * *
151860 GTAATGTGCCGAACATCTGGGGGTTGTTTGGCTGAATGAATATACAATTTCCTACTTTCTAATTC
130 GTGATGTGCCGAACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTC
* ***
151925 ATTCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGACAATGGCCAAATG
195 ATTCTCTATTCTTATAA-TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
* * *
151990 ACTTTCAGTAGATAGGGAATCGGTGTTCCAAGCACCAAAATAATA-TTTTT-TTTGTAATATCCT
259 ATTTTCAATAGATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCCT
* * * *
152053 ATTTGAAACTTT-TTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATATAGAGGAAGGTG
324 ATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAGAAAGGGG
* * *
152117 ATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTTGACGTTTTCCTGGTGTGGCCTATTTGT
389 ATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTCGACGTTTTCCTAGTGTAGCCTATTTGT
* *
152182 GTTGTG-TCGAACATTTGAGCTTGTTTGGCTAAATGAATATACAACTTCCTACTTTCTAATTCAT
454 GTTGTGCT-AAACATCTGAGCTTGTTTGGCTAAATGAATATACAACTTCCTACTTTCTAATTCAT
* * **
152246 TC-TC-TATTA-TTATAACTCCAATTTCACATCTCTACGCAAATGATTGTGGCCAAATAATTTTC
518 TCTTCTTATAATTTATAACTCCAATTTCACATCTCTACACAAATGATAATGGCCAAATAATTTTC
* * *
152308 AACAGA-CAGGGAATCGGTGTTTCGAGCAATAAAATAATATTTTTTTTCTTTGTAAAATCCC
583 AACAGATC---CAATCGATGTTTCGAGCAACAAAATAATATTTTTTTTCTTTGTAAAAT-CC
* * * * * * *
152369 TATTTGGAACTTTCTTTTCTATAAGTATTATGTATAGAGATTTTTTCTTGAATAGAGGGGAAGGT
1 TATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTGAATAGAGAGGAAGGT
* * *
152434 GATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTGCCTGGTGCAGTCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGCCTATTTG
* *
152499 TGTTGTG-CAAGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTC
131 TGATGTGCCGA-ACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTC
*
152563 ATTTTCTATTC------TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGA
195 ATTCTCTATTCTTATAATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGA
*
152622 TTTTCAATAAATA-GGAAGTCGGTGTTCCGAGCACCAAAATAATATTTTTTTTTCTTTGTAATAT
260 TTTTCAATAGATAGGGAA-TCGGTGTTCCGAGCACCAAAATAATA---TTTTTTCTTTGTAATAT
* * * *
152686 CCTATTTAAAATTTTCTTTTCTATAAGCAATAATTATAGAGATGT
321 CCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGT
152731 CTTTATGATT
Statistics
Matches: 873, Mismatches: 113, Indels: 43
0.85 0.11 0.04
Matches are distributed among these distances:
630 4 0.00
631 79 0.09
635 6 0.01
636 75 0.09
637 33 0.04
638 211 0.24
639 11 0.01
642 1 0.00
643 163 0.19
644 23 0.03
645 5 0.01
646 38 0.04
647 118 0.14
648 1 0.00
649 2 0.00
650 10 0.01
651 93 0.11
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (640 bp):
TATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTGAATAGAGAGGAAGGT
GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGCCTATTTG
TGATGTGCCGAACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTCA
TTCTCTATTCTTATAATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGAT
TTTCAATAGATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCCTAT
TTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAGAAAGGGGAT
GAAGTATAGGAGGTAATTATGACTGGTTTCAAACTCGACGTTTTCCTAGTGTAGCCTATTTGTGT
TGTGCTAAACATCTGAGCTTGTTTGGCTAAATGAATATACAACTTCCTACTTTCTAATTCATTCT
TCTTATAATTTATAACTCCAATTTCACATCTCTACACAAATGATAATGGCCAAATAATTTTCAAC
AGATCCAATCGATGTTTCGAGCAACAAAATAATATTTTTTTTCTTTGTAAAATCC
Found at i:152646 original size:319 final size:317
Alignment explanation
Indices: 151080--152730 Score: 1919
Period size: 319 Copynumber: 5.1 Consensus size: 317
151070 TGAGAATATA
* * * *
151080 TATTTGGAACTTTCTTTTCTATAAGCAATAAGTATATAGATGTTCTCTTGAATAGAGATGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* *
151145 GATGAAGTATAGGAGGTAATTATGAATGGTTTCAACCTCGATGTTTTCTTGGTGTAGCCAGCCTA
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCT-G-GT-G-CAGCCTA
* * * * * * *
151210 TTTCTGCTGTGCCGAACATCT-GAGGGTTTTTTGGCTGAATGAATATGCAACTTCCTATTTTCTG
127 TTTGTGTTGTGCAG-ACATCTGGA-GGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTA
* * * * ** *
151274 ATTCATTCTCTAGTATTATAAGTTATAACTCAAATTTCATATCTCTCCACATTTGATGGTGGCCA
190 ATTCATT-T-T-CTA-T-T--CTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCA
** *
151339 AATGATTTTTCAATAGATAGGGAATCTATGTCCCGAGCACCAAAATAATA--TTTTTTCTTTGTA
248 AATGA-TTTTCAATAGATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTA
*
151402 ATATTC
312 ATATCC
* * * *
151408 TATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAGAAAGGG
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* ** * * *
151473 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTTTAGTGTATCCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGCCTATTTG
*
151538 TGTTGTGCTAAACATCTGG-GGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCA
131 TGTTGTGC-AGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCA
* * *
151602 TTCTT-TATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGGTAATGGCCAAATG
195 TT-TTCTATTC-------TTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATG
** ** * *
151666 ATTTTCAGCAGAT--CCAATCGATGTTTCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATC
252 ATTTTCAATAGATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATC
151729 C
317 C
* * *
151730 TATTTGAAACTTTTTTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTAAATAGAGAGGAAGG
1 TATTTGAAAC-TTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGG
* * * * * * *
151795 TGATGAAGTATAGGAGGTAATTATAACTGGTTTCAAACTTGATATTTTCCCGGTACAACCTATTT
65 TGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGCCTATTT
** * * *
151860 GTAATGTGCCGAACATCTGGGGGTTGTTTGGCTGAATGAATATACAATTTCCTACTTTCTAATTC
130 GTGTTGTGCAG-ACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTC
* * * *
151925 ATTCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGACAATGGCCAAATG
194 ATTTTCTATTC-------TTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATG
* * *
151990 ACTTTCAGTAGATAGGGAATCGGTGTTCCAAGCACCAAAATAATA---TTTTT-TTTGTAATATC
252 ATTTTCAATAGATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATC
152051 C
317 C
*
152052 TATTTGAAACTTT-TTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATATAGAGGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* * * **
152116 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTTGACGTTTTCCTGGTGTGGCCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGCCTATTTG
* * *
152181 TGTTGTGTC-GAACAT-TTGAGCTTGTTTGGCTAAATGAATATACAACTTCCTACTTTCTAATTC
131 TGTTGTG-CAG-ACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTC
* * * * * *
152244 ATTCTCTATTATTATAACTCCAATTTCACATCTCTACGCAAATGATTGTGGCCAAATAATTTTCA
194 ATTTTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGATTTTCA
* * * ** *
152309 ACAGACAGGGAATCGGTGTTTCGAGCAATAAAATAATATTTTTTTTCTTTGTAAAATCCC
259 ATAGATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAATAT-CC
* * * * * * *
152369 TATTTGGAACTTTCTTTTCTATAAGTATTATGTATAGAGATTTTTTCTTGAATAGAGGGGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* * *
152434 GATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTGCCTGGTGCAGTCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGCCTATTTG
*
152499 TGTTGTGCAAGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTCA
131 TGTTGTGC-AGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCA
*
152564 TTTTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTTTCAA
195 TTTTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGATTTTCAA
*
152629 TAAATA-GGAAGTCGGTGTTCCGAGCACCAAAATAATATTTTTTTTTCTTTGTAATATCC
260 TAGATAGGGAA-TCGGTGTTCCGAGCACCAAAATAATA-TTTTTTTTCTTTGTAATATCC
* * * *
152688 TATTTAAAATTTTCTTTTCTATAAGCAATAATTATAGAGATGT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGT
152731 CTTTATGATT
Statistics
Matches: 1148, Mismatches: 146, Indels: 67
0.84 0.11 0.05
Matches are distributed among these distances:
312 78 0.07
315 5 0.00
316 9 0.01
317 15 0.01
318 117 0.10
319 222 0.19
320 161 0.14
321 4 0.00
322 60 0.05
323 207 0.18
324 135 0.12
325 2 0.00
326 27 0.02
328 106 0.09
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (317 bp):
TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGCCTATTTG
TGTTGTGCAGACATCTGGAGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCAT
TTTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATAGTGGCCAAATGATTTTCAAT
AGATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTTTCTTTGTAATATCC
Found at i:153235 original size:24 final size:24
Alignment explanation
Indices: 153190--153236 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
153180 ATGTAGCAAA
* *
153190 TATCATGTTTCTAAAATTATGAAG
1 TATCATGTGTCTAAAATGATGAAG
*
153214 TATCATGTGTCTAAAGTGATGAA
1 TATCATGTGTCTAAAATGATGAA
153237 ATGACATGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (24 bp):
TATCATGTGTCTAAAATGATGAAG
Found at i:155988 original size:36 final size:35
Alignment explanation
Indices: 155915--155985 Score: 99
Period size: 34 Copynumber: 2.0 Consensus size: 35
155905 TGAATTTCCT
**
155915 ATCCTGAACTTTTTTTTGTTAGTAATAAATATAGAG
1 ATCCTGAAC-TTTTTTTGCAAGTAATAAATATAGAG
*
155951 ATCCTGAAC-TTTTTTGCAAGTAATAAATATGGAG
1 ATCCTGAACTTTTTTTGCAAGTAATAAATATAGAG
155985 A
1 A
155986 GATTCTCTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
34 23 0.72
36 9 0.28
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.39
Consensus pattern (35 bp):
ATCCTGAACTTTTTTTGCAAGTAATAAATATAGAG
Found at i:158166 original size:38 final size:38
Alignment explanation
Indices: 158115--158193 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
158105 ATGTGTTCAA
158115 AGTACTTAAATAATTATTTTAATCTTTAATGTTGAAAT
1 AGTACTTAAATAATTATTTTAATCTTTAATGTTGAAAT
158153 AGTACTTAAATAATTATTTTAATCTTTAATGTTGAAAT
1 AGTACTTAAATAATTATTTTAATCTTTAATGTTGAAAT
158191 AGT
1 AGT
158194 TTTGGTTGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (38 bp):
AGTACTTAAATAATTATTTTAATCTTTAATGTTGAAAT
Found at i:159540 original size:12 final size:12
Alignment explanation
Indices: 159523--159548 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
159513 GTTGAGCGAA
159523 TATTGGTAGTGG
1 TATTGGTAGTGG
159535 TATTGGTAGTGG
1 TATTGGTAGTGG
159547 TA
1 TA
159549 GTTGAAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.42
Consensus pattern (12 bp):
TATTGGTAGTGG
Found at i:160146 original size:200 final size:196
Alignment explanation
Indices: 159789--160312 Score: 642
Period size: 200 Copynumber: 2.6 Consensus size: 196
159779 TGTCCAGAAT
* *
159789 ATAAAGTGTCGATACATTTATTAAAAGTATTGATCCCAATAACATCGAAGCCGATAATTATAATG
1 ATAAAGTGTCGATACATTTATTAAAAGTATCGAT-CCAA-AACATCGAAACCGATAATTATAATG
* * * *
159854 TAATAGGTAAATTTACAATGTAGCTGATATAAATATACCGGTTTTATAAGAAAATAGGTCAGCAT
64 TAATAGGTAAATTTACAATGTATCCGATATAAATATA-CAGTTTTATAAGAAAATAGGTCAGAAT
* * *
159919 AAAGTATCGACACTATTTAAATTTGTGTCGATATTTTTTGTCCATAATGAATACCAAACGGGGTG
128 AAAGTATCGACACTATTTAAATTTGTGTCGATACTTTTT-TCCAGAATGAATACCAAACGAGGTG
159984 CACAC
192 CACAC
* * *
159989 ATAAAGTGTCGATACATTTATTAAAAATATCGATCTCACAAACATCGAAACTGATAATTACAATG
1 ATAAAGTGTCGATACATTTATTAAAAGTATCGATC-CA-AAACATCGAAACCGATAATTATAATG
* *
160054 TGATAGGTAAATTTACAATGTATCCGATATAAATATATCAGTTTTATGAGAAAATAGGTCTA-AA
64 TAATAGGTAAATTTACAATGTATCCGATATAAATATA-CAGTTTTATAAGAAAATAGGTC-AGAA
* * * * * * *
160118 TAATGTATCGACATTTTTTAAGTTTGTGTTGATACTTTTTTCCAGAATGAATGCCCAACGAGGTG
127 TAAAGTATCGACACTATTTAAATTTGTGTCGATACTTTTTTCCAGAATGAATACCAAACGAGGTG
**
160183 CATGC
192 CACAC
*
160188 ATAAAGTGTCGATACATTTA--AAATTGTATCGATCCAAAAAACATCGAAACCGATAATTATAAT
1 ATAAAGTGTCGATACATTTATTAAA-AGTATCGATCC--AAAACATCGAAACCGATAATTATAAT
* * * * *
160251 GTAATAGGTAAATTTGCAATGTTAT-CGGTATAAATATACCGGTTTACTTAGAAAATAGGTCA
63 GTAATAGGTAAATTTACAATG-TATCCGATATAAATATACAGTTTTA-TAAGAAAATAGGTCA
160313 ATATAAGTGT
Statistics
Matches: 282, Mismatches: 34, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
197 11 0.04
198 75 0.27
199 49 0.17
200 145 0.51
201 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.33
Consensus pattern (196 bp):
ATAAAGTGTCGATACATTTATTAAAAGTATCGATCCAAAACATCGAAACCGATAATTATAATGTA
ATAGGTAAATTTACAATGTATCCGATATAAATATACAGTTTTATAAGAAAATAGGTCAGAATAAA
GTATCGACACTATTTAAATTTGTGTCGATACTTTTTTCCAGAATGAATACCAAACGAGGTGCACA
C
Found at i:160415 original size:23 final size:23
Alignment explanation
Indices: 160389--160447 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
160379 TGGTTAAATG
*
160389 CCTATTTTATTATATAAGCGCTA
1 CCTATTATATTATATAAGCGCTA
*
160412 CCTATTACATTATATAAGCGCTA
1 CCTATTATATTATATAAGCGCTA
*
160435 CCTAATATATTAT
1 CCTATTATATTAT
160448 TGTACTTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.41
Consensus pattern (23 bp):
CCTATTATATTATATAAGCGCTA
Found at i:160421 original size:87 final size:87
Alignment explanation
Indices: 160313--160475 Score: 272
Period size: 87 Copynumber: 1.9 Consensus size: 87
160303 AAATAGGTCA
* * * * *
160313 ATATAAGTGTTACCTATTACATTATATAATCGCTACCTAATATGTTATTGTACTTGATAGTATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTACTTGATAATATTT
*
160378 CTGGTTAAATGCCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
160400 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTACTTGATAATATTT
160465 CCGGTTAAATG
66 CCGGTTAAATG
160476 ATATAACATA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTACTTGATAATATTT
CCGGTTAAATGCCTATTTTATT
Found at i:161393 original size:23 final size:23
Alignment explanation
Indices: 161366--161429 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
161356 ATATATTTTT
161366 ATATTAGTATGTTTATAACATAA
1 ATATTAGTATGTTTATAACATAA
* *
161389 ATATTA--ATGTACTATTGACATAA
1 ATATTAGTATGT-TTA-TAACATAA
* *
161412 TTATTAGTATATTTATAA
1 ATATTAGTATGTTTATAA
161430 AATAGATGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
21 4 0.13
22 2 0.06
23 20 0.65
24 2 0.06
25 3 0.10
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (23 bp):
ATATTAGTATGTTTATAACATAA
Found at i:164619 original size:22 final size:22
Alignment explanation
Indices: 164594--164636 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
164584 GAAAGTCAAC
164594 GGTCAACGGTCGAGTCGGGTCG
1 GGTCAACGGTCGAGTCGGGTCG
*
164616 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGAGTCGGGTC
164637 AGACCGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.12, C:0.23, G:0.47, T:0.19
Consensus pattern (22 bp):
GGTCAACGGTCGAGTCGGGTCG
Done.