genome.fa.s4190.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004190.1 Hibiscus syriacus cultivar Beakdansim tig00009168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53148

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5239--5321	7	12.4	7	75	17	54	79	0	20	0	0.73
5263--5319	11	5.4	11	83	12	75	82	0	17	0	0.67
5243--5321	36	2.2	37	88	6	117	79	0	20	0	0.73
5239--5312	18	4.1	18	77	16	82	79	0	20	0	0.73
5243--5321	19	4.4	17	81	18	81	79	0	20	0	0.73
6547--7073	91	5.8	92	95	2	910	27	15	21	35	1.94
7914--7958	24	1.9	23	82	13	56	51	6	24	17	1.70
8027--8070	23	1.9	23	86	9	63	50	6	25	18	1.71
8138--8182	24	1.9	23	82	13	56	51	6	24	17	1.70
7754--8733	111	8.8	113	91	4	1518	36	14	17	31	1.90
7754--8733	332	2.9	334	91	4	1540	36	14	17	31	1.90
9093--9143	3	17.0	3	95	0	93	35	0	0	64	0.94
12780--12833	27	2.0	27	82	13	67	31	1	9	57	1.41
13901--14011	49	2.3	49	96	0	204	25	21	31	21	1.98
17501--17549	17	2.8	18	81	6	64	63	18	2	16	1.41
17508--17584	26	2.9	26	78	3	82	67	12	1	18	1.29
18346--18506	77	2.1	77	98	0	313	36	26	13	23	1.92
18776--18802	2	13.5	2	100	0	54	51	0	0	48	1.00
22151--22309	64	2.5	65	88	6	227	35	22	13	28	1.92
26934--27298	55	6.8	54	81	9	437	28	27	13	30	1.94
26983--27294	108	2.9	107	93	2	520	27	28	14	29	1.95
26910--27351	55	8.2	55	78	11	391	28	26	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27270--27690	51	8.3	51	84	10	490	24	24	18	32	1.97
27301--27690	198	1.9	204	86	8	559	22	25	18	33	1.97
28069--28295	36	6.4	36	84	5	232	20	19	22	37	1.95
28069--28304	107	2.2	107	84	5	300	19	19	22	37	1.94
28069--28291	71	3.1	69	80	6	241	19	20	22	37	1.95
29480--29786	125	2.5	124	85	2	393	26	24	15	32	1.96
30170--30529	175	2.1	175	97	2	679	26	26	13	34	1.93
33304--33346	13	3.4	12	87	12	52	48	16	18	16	1.81
33315--33346	6	5.2	6	92	7	55	53	15	15	15	1.74
33304--33346	19	2.3	17	78	21	50	48	16	18	16	1.81
33586--33745	21	7.6	21	84	6	200	15	21	21	41	1.90
33591--33745	42	3.7	42	86	3	222	16	21	20	41	1.90
33589--33745	63	2.5	64	89	2	237	15	22	20	41	1.90
45617--45651	15	2.3	15	95	0	61	22	11	22	42	1.85
46225--46271	15	3.2	14	81	18	60	59	0	34	6	1.23
48630--48949	162	2.0	163	85	4	432	28	16	6	48	1.72
50156--50213	16	3.3	18	68	24	52	39	17	3	39	1.66
50158--50219	33	2.0	31	84	9	81	40	14	3	41	1.62
50446--50480	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1

The End!