genome.fa.s4193.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004193.1 Hibiscus syriacus cultivar Beakdansim tig00009171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101736

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3598--3636	3	13.0	3	100	0	78	33	0	0	66	0.92
8486--8532	24	2.0	24	86	0	67	23	0	51	25	1.49
9203--9259	22	2.7	21	78	13	64	35	14	21	29	1.92
15020--15109	44	2.0	44	85	4	119	33	16	17	32	1.93
20759--20886	64	2.0	64	92	0	211	27	18	8	45	1.79
25936--25988	21	2.5	21	75	6	63	20	24	18	35	1.95
25978--26029	21	2.5	21	87	3	70	38	17	23	21	1.93
25963--26129	41	4.0	41	67	9	115	30	19	19	30	1.96
26039--26111	21	3.5	21	79	3	76	23	21	17	36	1.94
26101--26154	20	2.6	21	82	5	74	38	16	22	22	1.93
26141--26189	20	2.5	20	93	0	80	30	24	14	30	1.94
26748--26792	19	2.4	19	92	0	72	48	26	15	8	1.74
26810--26898	14	5.6	14	69	23	61	11	24	22	41	1.86
26793--26922	33	3.9	33	94	1	206	11	24	21	42	1.86
29092--29158	21	3.2	21	66	6	55	23	35	20	19	1.95
29040--29158	42	2.8	42	81	5	107	22	36	18	22	1.95
30512--30547	14	2.6	14	95	0	63	30	0	25	44	1.54
30654--30712	19	3.4	18	67	23	54	44	20	23	11	1.85
30672--30728	14	3.7	14	70	20	51	42	22	26	8	1.83
30654--30743	33	2.7	33	91	0	144	42	21	23	13	1.88
30743--30870	33	3.9	32	86	10	186	14	22	20	42	1.87
30739--30870	14	7.7	19	65	24	87	13	22	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30736--30869	67	2.0	66	95	1	241	15	22	20	41	1.89
33159--33195	12	3.1	12	92	0	65	2	24	0	72	0.97
33370--33437	24	2.8	24	84	0	82	38	19	16	26	1.92
34197--34248	21	2.5	21	87	3	70	38	17	21	23	1.93
34275--34324	20	2.5	20	76	0	64	38	20	18	24	1.93
34538--34584	20	2.3	20	92	0	76	40	25	19	14	1.90
34538--34593	20	2.8	20	83	5	69	42	21	19	16	1.89
34612--34679	19	3.8	19	85	12	92	13	20	17	48	1.80
36717--36770	20	2.7	20	85	0	72	37	22	24	16	1.94
36757--36847	14	5.4	18	71	23	90	46	21	18	13	1.83
36774--36863	14	5.8	14	71	21	72	48	23	16	11	1.78
36757--36879	33	3.8	33	92	2	194	47	24	17	11	1.80
36757--36879	65	1.9	66	89	5	196	47	24	17	11	1.80
36785--36879	14	5.6	18	70	22	71	49	24	15	10	1.76
36875--36971	19	5.7	18	71	23	93	13	20	20	45	1.85
36899--36955	14	3.7	14	75	20	60	10	15	22	50	1.74
36880--36971	33	2.8	33	98	0	175	13	19	20	46	1.83
36956--36999	20	2.2	20	88	4	63	18	25	20	36	1.95
36965--37021	20	2.8	20	83	0	60	19	21	19	40	1.92
37448--37492	18	2.5	18	85	0	63	15	15	42	26	1.87
38812--38870	20	3.0	20	87	0	73	42	22	18	16	1.89
39133--39176	22	2.0	22	90	0	70	20	15	43	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39345--39460	20	5.7	21	76	10	82	24	17	23	35	1.95
39406--39459	20	2.7	20	91	0	90	25	18	22	33	1.97
39344--39458	41	2.8	41	82	3	135	25	17	23	33	1.96
39345--39462	61	1.9	62	84	5	159	23	16	22	36	1.94
39530--39570	21	2.0	21	85	0	55	34	29	17	19	1.94
42656--42706	26	1.9	27	88	4	77	72	1	5	19	1.15
42677--42782	15	7.4	14	66	23	53	74	1	8	15	1.14
42743--42831	28	3.1	28	77	16	94	75	1	4	19	1.04
42746--42863	27	4.4	25	72	18	78	72	1	3	22	1.08
42746--42831	27	3.1	27	77	14	95	75	1	4	18	1.04
42746--42863	55	2.2	52	78	14	123	72	1	3	22	1.08
42809--42876	33	2.0	34	83	13	88	66	1	2	29	1.15
42808--42887	35	2.3	35	82	8	101	67	1	2	28	1.11
43476--43550	37	2.0	37	97	0	141	30	17	12	40	1.86
43987--44069	35	2.4	35	87	2	123	32	9	15	42	1.80
44054--44181	67	1.9	67	85	3	177	37	14	20	28	1.91
44066--44260	102	1.9	104	86	4	279	39	13	20	26	1.89
44408--44668	106	2.5	106	90	1	400	23	17	23	35	1.95
45331--45443	33	3.5	32	83	4	129	38	20	11	30	1.88
46524--46583	13	4.8	12	74	15	50	3	15	3	78	1.01
49599--49655	26	2.1	27	90	3	89	73	0	7	19	1.05
49620--49735	44	2.6	45	71	14	107	73	0	9	16	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52692--52751	20	3.0	20	78	4	75	20	20	31	28	1.97
56219--56343	64	2.0	64	85	3	171	34	20	20	24	1.97
56909--56993	16	5.4	16	67	25	65	38	14	16	30	1.88
56905--57188	31	9.2	31	88	0	433	38	11	16	33	1.85
56908--57187	62	4.5	62	93	0	479	38	12	16	32	1.85
60295--60419	64	2.0	64	87	3	180	34	21	20	23	1.97
60981--61264	31	9.2	31	86	0	388	38	11	17	32	1.86
61016--61069	16	3.4	16	67	23	51	40	14	14	29	1.86
60984--61263	62	4.5	62	90	0	434	38	12	17	32	1.86
64655--64709	20	2.8	20	94	2	94	12	27	41	18	1.86
65073--65097	2	12.5	2	100	0	50	52	0	0	48	1.00
65732--65839	37	2.9	37	95	0	189	31	12	13	42	1.81
66182--66232	22	2.3	22	90	6	77	52	0	0	47	1.00
66204--66233	15	1.9	16	93	6	53	53	0	0	46	1.00
66186--66242	22	2.5	23	80	8	71	57	1	0	40	1.09
66310--66352	21	2.0	21	100	0	86	39	13	13	32	1.85
71831--71879	20	2.5	21	83	12	68	44	2	12	40	1.53
71851--71941	31	3.0	31	93	4	152	47	0	8	43	1.34
82001--82090	28	3.1	30	90	7	143	21	22	3	53	1.60
84116--84181	7	9.1	7	78	15	55	24	0	0	75	0.80
84119--84184	6	10.7	6	79	7	53	22	0	0	77	0.77
84106--84157	25	2.1	25	81	0	59	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84116--84184	23	3.3	19	71	24	59	23	0	0	76	0.78
84128--84166	16	2.5	15	84	8	51	30	0	0	69	0.89
84114--84163	25	2.0	25	84	0	64	32	0	0	68	0.90
85366--85422	3	18.7	3	92	3	96	31	0	1	66	1.02
89589--90774	84	14.3	83	81	4	1156	31	23	20	25	1.98
89581--90758	416	2.8	414	83	3	1458	31	23	20	25	1.98
89623--90774	248	4.6	248	81	3	1206	30	23	20	25	1.98
95108--95156	26	1.9	25	83	4	62	55	4	10	30	1.52
96151--97024	251	3.5	243	78	12	830	33	16	12	37	1.87

Tables:   1

The End!