Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004194.1 Hibiscus syriacus cultivar Beakdansim tig00009172_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93596

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
507--559
27
2.0
27
100
0
106
32
15
11
41
1.82
503--561
27
2.5
21
70
27
55
30
16
11
40
1.85
1356--1411
8
6.9
8
93
4
85
32
0
25
42
1.55
1356--1411
4
13.8
4
81
3
67
32
0
25
42
1.55
1439--1489
8
6.5
8
76
13
52
29
1
19
49
1.60
1429--1482
15
3.5
15
82
5
54
27
1
20
50
1.59
1356--1489
16
8.7
16
76
12
70
29
3
20
45
1.69
4420--4451
17
1.9
17
93
6
57
31
6
15
46
1.71
8523--8576
18
3.0
18
83
0
63
22
25
27
24
2.00
14352--14396
20
2.2
20
96
0
81
35
13
24
26
1.92
21246--21299
6
9.5
6
86
8
51
20
48
0
31
1.50
21233--21302
12
6.1
12
74
14
58
21
44
0
34
1.53
33534--33601
3
22.7
3
93
0
118
33
2
0
63
1.10
33755--33809
16
3.5
16
97
2
103
7
58
18
16
1.60
34967--35013
14
3.5
13
80
13
51
40
2
2
55
1.24
35677--35719
18
2.4
18
76
7
52
25
4
2
67
1.22
35714--35751
15
2.8
13
88
11
51
23
5
2
68
1.23
44153--44200
18
2.7
18
96
0
87
33
20
29
16
1.95
45199--45237
19
2.1
19
95
0
69
20
38
15
25
1.92
45185--45347
65
2.5
65
85
4
224
30
26
15
27
1.96
52591--52634
21
2.1
21
83
8
54
11
36
13
38
1.81
53678--53716
19
2.1
19
95
0
69
20
38
15
25
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53615--53814
65
3.1
64
80
9
194
30
26
16
27
1.97
57281--57341
21
3.2
21
65
29
64
42
21
4
31
1.74
57205--57347
35
4.0
36
95
2
236
46
18
5
28
1.72
61881--61941
21
3.2
21
63
29
55
42
19
4
32
1.73
61832--61947
35
3.3
35
91
4
191
43
18
5
32
1.73
62131--62169
19
2.1
19
95
0
69
41
25
7
25
1.82
69121--69180
26
2.3
27
88
8
88
3
33
0
63
1.11
70114--70157
3
15.7
3
82
17
51
65
0
31
2
1.05
73925--73964
21
1.9
21
90
10
64
37
0
10
52
1.35
74939--74994
23
2.4
23
85
8
69
35
0
3
60
1.14
76264--76294
12
2.6
12
100
0
62
35
6
32
25
1.82
79163--79249
35
2.5
34
78
12
88
56
10
6
26
1.58
79458--79507
3
16.7
3
91
0
73
4
36
28
32
1.76
83473--83499
12
2.2
12
100
0
54
40
0
51
7
1.30
84237--84274
20
1.9
20
88
0
58
13
26
36
23
1.91
91124--91249
50
2.5
50
86
0
180
19
27
37
15
1.92

Tables:   1

The End!