genome.fa.s4195.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004195.1 Hibiscus syriacus cultivar Beakdansim tig00009174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66384

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2855--2902	22	2.3	21	85	7	62	35	14	20	29	1.93
2949--3000	22	2.5	22	87	6	72	28	15	26	28	1.96
3329--3658	59	5.7	59	89	3	487	33	11	19	35	1.87
3335--3654	117	2.8	117	89	5	467	34	11	19	34	1.87
3333--3658	176	1.9	170	89	3	508	34	11	19	34	1.87
5055--5094	19	2.0	20	90	4	64	72	0	2	25	0.97
5068--5147	43	1.9	41	87	5	115	71	0	5	23	1.06
5063--5143	16	5.0	15	72	20	65	70	0	4	24	1.07
5171--5217	19	2.5	19	89	3	69	70	0	6	23	1.10
5709--5738	12	2.5	12	88	0	51	66	3	23	6	1.30
7309--7382	37	2.0	37	100	0	148	27	21	21	29	1.99
8969--9052	41	2.0	42	90	2	134	33	13	4	48	1.63
9169--9213	3	15.3	3	95	4	83	33	0	0	66	0.92
13179--13257	39	2.0	39	85	9	108	32	27	24	15	1.95
13266--13576	44	7.1	44	86	0	424	30	21	24	23	1.99
19798--19842	23	2.0	22	83	12	56	53	4	8	33	1.52
19798--19842	22	2.0	23	83	12	58	53	4	8	33	1.52
20205--20477	44	6.1	44	79	3	278	31	20	24	23	1.98
36130--36168	3	13.0	3	89	10	62	64	0	2	33	1.08
36391--36695	104	2.9	102	75	5	281	25	15	23	35	1.94
37242--37553	102	3.1	100	84	4	367	40	10	15	33	1.82
37296--37553	101	2.5	102	86	3	342	40	11	14	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39163--39204	4	10.5	4	85	10	59	71	0	0	28	0.86
40578--40654	3	25.7	3	84	5	102	64	0	0	35	0.93
40578--40665	9	10.0	8	77	18	61	67	0	0	32	0.91
40894--41236	139	2.5	138	84	6	403	26	19	14	39	1.91
40894--41623	123	5.6	136	78	12	395	26	18	15	39	1.91
41177--41623	123	3.6	122	91	1	698	25	19	15	39	1.91
47606--47730	43	2.9	43	91	1	198	39	20	9	31	1.84
48578--48615	19	2.0	19	100	0	76	57	10	10	21	1.61
48582--48624	19	2.3	19	91	0	68	65	6	9	18	1.44
50137--50176	4	10.2	4	84	15	57	77	0	0	22	0.77
50129--50177	14	3.5	14	76	18	57	77	2	0	20	0.87
50139--50172	11	3.0	11	91	8	59	79	0	0	20	0.73
50129--50182	27	2.0	27	92	0	90	74	1	0	24	0.92
51534--51623	3	31.0	3	86	10	134	67	0	0	32	0.91
51534--51626	29	3.1	30	84	10	127	67	0	0	32	0.91
53778--53828	10	5.4	10	79	9	54	3	17	0	78	0.90
53775--53827	27	2.0	27	92	0	88	3	18	0	77	0.92
53777--53820	9	4.9	9	78	10	54	2	20	0	77	0.88
56186--56462	45	6.2	45	86	0	367	29	22	11	36	1.89
56969--57021	20	2.7	20	77	16	56	18	24	15	41	1.89
63071--63368	45	6.6	45	83	5	300	29	22	10	36	1.88
63096--63368	90	3.0	90	84	2	372	28	23	10	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63096--63368	134	2.0	135	85	4	374	28	23	10	36	1.89
63780--63851	19	3.6	19	74	18	65	27	18	16	37	1.92
65673--65739	21	3.4	21	65	23	63	43	14	11	29	1.82

Tables:   1

The End!