Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004197.1 Hibiscus syriacus cultivar Beakdansim tig00009179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60214

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
772--891
43
2.9
42
81
3
152
24
18
25
32
1.97
1801--1872
1
72.0
1
74
0
63
1
8
2
87
0.70
1801--1873
8
8.8
8
84
11
85
1
9
2
86
0.73
1801--1872
9
8.4
9
89
7
89
1
8
2
87
0.70
1801--1861
17
3.9
15
82
17
79
0
9
3
86
0.67
1910--1944
8
4.5
8
85
7
54
0
11
0
88
0.51
1910--1942
14
2.3
15
94
5
59
0
12
0
87
0.53
13334--13370
19
1.9
19
89
10
58
75
0
5
18
0.99
13325--13456
28
4.7
28
74
19
98
73
3
6
15
1.19
13400--13490
17
5.6
16
69
18
62
74
2
7
15
1.14
13685--13732
4
12.5
4
79
16
57
70
2
0
27
0.98
13792--13833
22
1.9
22
85
9
59
71
2
0
26
0.98
16122--16156
18
1.9
18
94
0
61
25
31
22
20
1.98
16954--16999
19
2.4
19
96
0
83
30
30
4
34
1.77
23016--23055
18
2.2
18
91
8
64
22
32
17
27
1.96
23495--23546
23
2.3
23
100
0
104
38
17
0
44
1.49
31534--31586
23
2.3
23
80
6
63
71
3
1
22
1.12
31536--31594
20
3.1
20
77
18
56
71
3
1
23
1.11
31784--31822
10
3.9
10
89
0
51
15
33
0
51
1.44
31786--31832
20
2.3
20
82
7
60
17
27
2
53
1.55
32687--32741
3
18.0
3
92
3
92
65
0
1
32
1.03
32797--33074
70
3.8
71
78
12
248
44
8
3
43
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32926--32951
12
2.2
12
100
0
52
46
7
7
38
1.61
32914--33073
37
4.4
37
85
11
197
45
7
3
43
1.47
32797--33135
138
2.4
136
82
11
359
44
7
3
43
1.50
33051--33111
27
2.3
27
80
5
81
47
4
3
44
1.41
33008--33135
65
2.0
63
84
6
168
46
6
3
43
1.47
33073--33171
34
2.7
36
77
13
105
42
8
6
43
1.59
32875--33171
138
2.2
136
82
10
347
43
7
4
44
1.51
33572--34545
84
11.7
83
80
6
1016
24
21
25
29
1.99
37887--37931
19
2.4
19
96
3
83
68
8
11
11
1.39
39772--39811
5
7.6
5
88
5
53
75
2
0
22
0.93
39877--39935
20
3.1
20
77
18
56
71
3
1
23
1.11
39876--39927
23
2.3
23
80
6
61
71
3
1
23
1.13
41027--41071
3
15.0
3
95
0
81
68
0
0
31
0.89
41130--41374
70
3.4
73
78
14
242
45
8
2
43
1.49
41078--41500
36
11.8
36
70
21
225
44
8
3
43
1.51
41130--41500
138
2.6
135
81
11
358
45
8
3
43
1.51
41373--41438
27
2.6
25
76
9
78
48
6
3
42
1.43
41335--41463
65
2.0
63
84
3
168
47
6
3
43
1.44
41400--41517
36
3.2
36
76
8
114
40
8
6
44
1.61
41530--41585
2
28.0
2
100
0
112
50
0
0
50
1.00
49892--49969
31
2.5
30
80
12
86
42
1
3
52
1.27
49892--49978
31
2.8
29
76
13
84
40
2
3
54
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56006--56030
2
12.5
2
100
0
50
52
0
0
48
1.00
59468--59724
52
4.9
51
77
13
170
29
24
17
28
1.97
59469--59862
53
7.6
52
77
13
241
28
24
16
29
1.97
59608--59865
50
5.1
49
79
12
258
27
25
15
31
1.96
59495--59865
105
3.6
101
82
6
360
28
24
16
29
1.97
59872--60052
71
2.5
71
86
8
253
22
18
20
39
1.93
59872--60052
36
5.1
36
88
7
246
22
18
20
39
1.93

Tables:   1

The End!