genome.fa.s4198.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004198.1 Hibiscus syriacus cultivar Beakdansim tig00009181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71792

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1793--1871	34	2.3	34	86	0	104	44	18	13	22	1.86
1850--1892	11	3.9	11	78	0	50	55	20	9	13	1.66
2402--2483	36	2.3	36	87	6	121	42	18	15	23	1.88
2546--3073	47	10.6	47	76	11	360	29	20	20	29	1.98
2491--2971	102	4.8	101	79	8	434	29	19	20	29	1.98
2546--3182	149	4.2	149	86	5	857	29	20	20	29	1.98
2695--3243	102	5.4	102	73	12	437	28	20	19	30	1.97
5654--5754	34	3.0	34	80	2	123	45	19	12	21	1.84
5729--5818	23	3.9	23	85	2	117	42	17	13	26	1.86
12650--12752	40	2.6	40	95	3	181	42	1	0	54	1.18
12687--12751	18	3.4	18	66	22	51	46	1	0	52	1.10
13624--13679	20	2.8	20	88	0	76	33	8	26	30	1.87
22050--22110	29	2.1	29	96	0	113	29	29	9	31	1.89
23594--23619	2	13.0	2	100	0	52	50	0	0	50	1.00
24953--24987	18	1.9	18	94	0	61	20	5	11	62	1.48
25588--25641	23	2.3	23	80	0	63	48	14	18	18	1.82
26806--26895	40	2.2	40	100	0	180	16	35	16	31	1.92
27605--27738	20	6.6	20	75	10	119	39	17	23	19	1.92
27727--27820	20	4.7	20	77	2	80	35	24	17	23	1.95
27605--27738	41	3.3	41	97	0	250	39	17	23	19	1.92
27724--27801	41	1.9	41	83	0	102	41	21	15	21	1.90
28377--28417	19	2.2	19	90	0	64	48	26	17	7	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28413--28558	19	8.1	19	73	17	114	12	23	21	42	1.87
28446--28533	33	2.6	33	92	1	140	11	25	25	38	1.89
28501--28558	20	2.9	20	80	10	64	13	24	18	43	1.87
30557--30679	42	2.9	42	80	2	122	22	36	17	22	1.95
30613--30679	21	3.2	21	66	6	55	23	35	20	19	1.95
31137--31173	14	2.6	14	86	0	56	48	21	0	29	1.50
31534--31584	20	2.5	20	90	0	75	35	23	21	19	1.96
31610--31676	18	3.8	19	83	16	92	13	22	17	46	1.83
31793--31829	14	2.6	14	86	0	56	48	21	0	29	1.50
33698--33764	19	3.5	19	83	4	89	37	23	23	14	1.93
33753--33810	14	3.9	14	79	16	71	48	25	17	8	1.75
33737--33815	32	2.4	33	95	2	142	46	24	18	10	1.80
33822--33903	18	4.6	19	79	14	86	13	20	20	45	1.85
33888--33931	20	2.2	20	84	4	54	20	25	18	36	1.95
34416--34460	18	2.5	18	85	0	63	15	15	42	26	1.87
35779--35816	20	1.9	20	88	0	58	50	21	15	13	1.78
36071--36115	23	2.0	23	90	0	72	20	15	44	20	1.87
36303--36396	20	4.7	20	81	2	98	22	19	24	34	1.97
36283--36397	20	5.7	20	79	5	97	22	18	23	35	1.95
36325--36459	41	3.3	41	82	6	132	19	22	20	37	1.94
36386--36478	20	4.6	20	78	4	96	18	24	18	38	1.92
36386--36481	41	2.3	41	98	0	183	18	23	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38932--38980	2	24.5	2	100	0	98	51	0	0	48	1.00
44646--44713	30	2.3	31	89	7	113	38	11	16	33	1.85
47838--47893	29	1.9	29	85	0	76	39	1	8	50	1.44
52458--52543	23	3.7	23	72	18	79	27	25	26	19	1.99
52785--52878	31	3.1	31	98	1	181	32	25	3	38	1.72
54160--54300	31	4.5	31	83	5	169	22	17	18	41	1.90
54998--55041	21	2.1	21	95	0	79	27	25	25	22	2.00
57959--58048	45	2.1	42	82	14	103	38	18	16	25	1.92
67867--68001	64	2.1	65	84	4	175	29	18	22	29	1.97
68703--68856	31	5.0	31	91	3	224	20	18	23	37	1.94
69537--69581	21	2.1	21	91	0	72	26	22	24	26	2.00

Tables:   1

The End!