genome.fa.s4199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004199.1 Hibiscus syriacus cultivar Beakdansim tig00009190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65546

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1696--1725	15	1.9	16	93	6	53	40	13	6	40	1.71
1823--1856	18	1.9	18	88	5	52	32	11	5	50	1.63
4249--4303	16	3.4	16	94	2	92	32	0	32	34	1.58
5896--5969	2	37.0	2	97	0	139	50	0	1	48	1.09
8732--8762	8	3.9	8	91	0	53	32	12	3	51	1.56
15504--15567	22	2.9	22	83	0	83	28	25	17	29	1.97
21669--22196	49	10.8	49	92	1	853	25	20	15	38	1.91
22625--22673	18	2.7	18	96	0	89	32	26	12	28	1.92
23814--23853	19	2.2	19	95	4	73	22	32	25	20	1.98
26074--26138	32	2.0	32	93	0	112	26	15	18	40	1.90
27403--27577	87	2.0	87	97	0	332	34	11	12	41	1.78
33137--33248	24	4.7	24	88	4	145	25	13	20	41	1.88
33137--33265	48	2.7	48	85	2	161	25	11	20	41	1.86
33134--33265	24	5.5	24	86	3	140	25	11	20	42	1.85
35327--35365	18	2.2	18	95	0	69	17	48	20	12	1.80
37836--37967	48	2.8	48	87	2	176	24	13	19	42	1.87
37836--37950	24	4.8	24	89	4	169	23	15	19	41	1.89
44435--44502	20	3.5	20	91	2	102	35	14	23	26	1.94
49464--49516	21	2.5	22	84	9	74	32	24	24	18	1.97
49505--49571	23	2.8	24	86	4	100	32	25	25	16	1.96
49505--49558	24	2.3	24	93	3	92	33	27	22	16	1.95
53755--53781	12	2.2	12	100	0	54	51	14	0	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54526--54576	21	2.4	21	74	6	50	25	17	17	39	1.92
55874--55958	23	3.8	22	79	18	104	34	28	16	21	1.95
55955--56001	21	2.2	21	88	0	67	38	31	8	21	1.83
56170--56230	29	2.1	30	81	3	70	55	6	8	29	1.54
59899--60008	35	3.3	35	77	13	131	41	0	11	45	1.47
59898--60003	30	3.1	34	77	15	112	39	0	11	48	1.46
59973--60033	23	2.5	25	84	5	72	44	3	8	44	1.50
60051--60115	30	2.2	30	86	5	87	36	0	10	52	1.37
60114--60168	9	5.2	10	73	26	51	29	1	3	65	1.20
62773--62806	17	1.9	17	88	5	50	58	5	0	35	1.22

Tables:   1

The End!