Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000042.1 Hibiscus syriacus cultivar Beakdansim tig00000064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66021

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
161--201
21
2.0
21
100
0
82
24
4
17
53
1.63
7289--7341
23
2.3
23
77
3
63
30
11
15
43
1.81
9078--9190
60
1.9
60
81
0
136
33
19
5
41
1.74
17403--17452
23
2.2
23
88
0
73
32
16
18
34
1.92
18956--19069
50
2.3
51
77
7
117
17
30
27
24
1.97
19235--19275
18
2.3
18
91
4
66
29
4
2
63
1.28
19912--19998
25
3.5
25
70
19
74
25
3
4
66
1.26
21372--21411
20
2.0
21
90
5
64
42
7
5
45
1.54
23015--23044
2
15.5
2
93
6
53
50
0
0
50
1.00
23687--23759
30
2.4
30
95
0
128
32
23
19
24
1.97
24909--24955
19
2.5
19
100
0
94
23
29
25
21
1.99
24944--25063
64
1.9
63
85
1
168
25
22
19
33
1.97
31292--31341
26
1.9
26
91
0
82
22
14
26
38
1.91
35752--35794
21
2.0
22
90
4
70
76
2
0
20
0.89
35727--35911
98
1.9
98
90
2
300
55
2
10
31
1.47
40228--40287
19
3.4
17
77
20
52
43
1
3
51
1.28
45605--45636
5
6.4
5
100
0
64
0
18
37
43
1.51
45734--45799
18
3.6
18
74
24
66
6
12
28
53
1.62
47013--47173
79
2.0
80
85
1
216
34
16
11
37
1.85
49945--49970
11
2.4
11
100
0
52
19
7
19
53
1.68
50981--51018
19
2.0
19
94
0
67
39
0
0
60
0.97
51037--51182
79
1.9
77
83
10
192
48
6
3
41
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54106--54158
16
3.3
16
81
0
70
24
32
11
32
1.91
54268--54465
40
5.0
40
71
12
131
45
3
5
45
1.42
54295--54488
39
5.0
40
69
11
107
44
1
6
47
1.37
54365--54397
14
2.4
14
94
0
57
27
6
9
57
1.53
54390--54432
16
2.6
17
78
10
54
44
2
6
46
1.43
54287--54520
116
2.0
116
97
0
441
41
2
6
48
1.44
54753--54787
12
3.0
12
87
8
54
48
2
8
40
1.49
54752--54786
11
3.1
11
88
8
52
51
2
8
37
1.47
62886--62962
40
1.9
40
84
5
102
33
6
19
40
1.77

Tables:   1

The End!