genome.fa.s420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000420.1 Hibiscus syriacus cultivar Beakdansim tig00000767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127181

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3361--3548	104	1.8	103	89	1	295	25	16	15	42	1.88
8792--10831	182	11.0	182	85	3	2149	24	15	27	32	1.95
9380--9462	25	3.3	24	70	25	73	28	16	26	27	1.97
8792--10776	360	5.3	362	82	6	2160	24	15	27	32	1.95
9875--10823	193	5.0	193	84	4	1106	24	15	27	31	1.96
11252--11618	85	4.3	83	74	6	272	28	16	19	35	1.94
11253--11988	170	4.4	165	81	6	614	26	18	21	33	1.96
11253--11984	83	8.7	83	77	8	599	26	18	21	33	1.96
11505--11984	246	1.9	252	84	4	650	25	20	21	32	1.97
12282--12397	32	3.6	32	88	2	153	31	18	15	33	1.93
13429--13466	20	1.9	20	100	0	76	2	10	7	78	1.04
13418--13503	35	2.5	34	82	16	97	4	11	5	77	1.09
13418--13473	20	2.7	20	78	15	69	1	12	7	78	1.02
13418--13503	7	12.3	7	73	13	70	4	11	5	77	1.09
24199--24268	32	2.2	32	97	0	131	15	40	18	25	1.90
24199--24282	32	2.7	31	87	5	82	17	41	17	22	1.90
32541--32586	22	2.1	22	87	0	65	50	0	2	47	1.13
36815--36863	21	2.3	21	96	0	80	26	14	28	30	1.95
45656--45686	15	2.1	15	93	0	53	45	0	0	54	0.99
53930--53965	2	18.0	2	100	0	72	50	0	0	50	1.00
54426--54489	33	1.9	33	81	12	78	51	0	3	45	1.17
54513--54563	23	2.2	23	82	0	57	45	1	1	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54657--54731	8	9.6	8	73	15	59	44	0	1	54	1.08
54643--54729	23	3.9	22	76	10	70	43	1	1	54	1.15
54688--54734	22	2.1	23	88	4	69	48	0	0	51	1.00
54696--54766	22	3.0	22	73	17	54	47	0	1	50	1.09
54615--54762	60	2.5	60	77	18	141	47	0	1	50	1.14
54656--54805	53	2.9	53	75	15	127	46	0	2	50	1.15
54927--55019	42	2.2	42	83	9	127	47	18	12	21	1.82
58641--58717	24	3.1	24	71	10	82	38	12	11	36	1.80
60985--61018	2	16.5	2	93	6	59	47	0	2	50	1.16
67624--67665	22	1.9	22	85	0	57	26	28	23	21	1.99
72889--72977	43	2.1	43	89	0	133	22	17	22	37	1.94
72899--72999	43	2.3	43	75	1	103	24	19	18	36	1.95
73532--73686	21	7.4	21	72	12	79	3	34	19	41	1.70
73596--73697	42	2.4	42	76	11	118	2	36	17	43	1.65
79436--79512	27	3.0	25	71	15	68	33	22	3	40	1.72
79436--79512	24	3.0	26	81	9	95	33	22	3	40	1.72
81603--81644	12	3.5	12	96	0	75	30	11	9	47	1.72
85289--85348	21	2.8	21	76	2	57	15	8	3	73	1.20
85516--85600	42	2.0	42	100	0	170	42	7	14	36	1.72
87650--87691	12	3.5	12	96	0	75	30	11	9	47	1.72
91512--91562	25	2.0	25	96	0	93	37	13	19	29	1.90
95469--95511	21	2.0	21	81	0	50	23	18	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97157--97223	3	22.0	3	85	11	84	32	1	1	64	1.12
97155--97223	20	3.5	20	82	7	81	33	1	1	63	1.12
120822--120987	86	1.9	85	84	8	219	28	11	20	39	1.87

Tables:   1

The End!