genome.fa.s4201.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004201.1 Hibiscus syriacus cultivar Beakdansim tig00009193_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111037

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4377--4415	20	2.0	20	89	0	60	33	23	10	33	1.88
17988--18055	32	2.1	32	86	5	93	30	13	30	25	1.93
18366--18405	21	1.9	21	89	0	62	52	2	7	37	1.43
19049--19121	32	2.3	32	90	2	112	47	13	10	27	1.76
30409--30446	19	2.0	19	90	10	60	23	21	2	52	1.59
33990--34054	23	2.8	23	80	0	76	32	23	24	20	1.98
34992--35019	2	14.0	2	100	0	56	50	50	0	0	1.00
35019--35050	2	16.0	2	100	0	64	50	0	0	50	1.00
38966--39034	23	3.0	23	82	0	84	34	26	21	17	1.95
39960--40047	2	44.0	2	95	0	158	48	0	2	48	1.13
43612--43680	23	3.0	23	84	0	93	34	26	21	17	1.95
44604--44661	2	29.0	2	92	0	98	48	0	3	48	1.18
48565--48633	23	3.0	23	80	0	84	33	26	23	17	1.96
49560--49599	2	20.0	2	94	0	71	47	0	2	50	1.14
52136--52190	21	2.7	20	88	8	83	52	18	5	23	1.65
53121--53189	26	2.5	27	77	13	70	55	1	2	40	1.24
52998--53276	144	2.0	140	82	7	346	47	8	7	36	1.62
54720--54789	3	23.7	3	80	13	58	62	0	0	37	0.95
54712--54768	18	3.2	18	76	11	64	56	0	0	43	0.99
55024--55676	122	5.4	124	78	9	688	26	19	14	38	1.91
55024--55704	244	2.9	234	86	6	961	27	18	15	38	1.91
58692--58724	16	2.1	16	100	0	66	24	30	0	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64614--64647	16	2.1	16	94	0	59	50	5	20	23	1.70
67801--67862	24	2.7	24	79	18	69	62	1	4	30	1.25
67826--67879	28	2.0	27	88	3	81	59	0	5	35	1.21
68464--68519	18	3.3	18	72	27	59	60	1	0	37	1.07
70006--70061	3	18.7	3	78	14	62	66	0	1	32	1.03
70006--70047	22	1.9	22	90	0	66	64	0	2	33	1.07
70006--70061	28	2.1	26	90	6	85	66	0	1	32	1.03
70006--70075	26	2.6	27	80	14	83	65	1	2	30	1.15
72874--72916	16	2.7	16	81	0	59	30	4	30	34	1.78
73118--73151	4	8.5	4	100	0	68	76	0	0	23	0.79
72912--73152	127	1.9	127	85	4	335	46	13	16	23	1.82
72985--73281	146	2.0	146	87	3	420	50	11	15	22	1.76
73282--73351	29	2.4	29	81	9	97	51	5	15	27	1.66
73282--73359	29	2.7	29	80	4	77	53	5	14	26	1.61
74283--74600	122	2.6	123	88	1	442	27	14	24	33	1.95
74623--75032	137	3.0	137	84	2	502	27	16	28	28	1.97
75034--75292	67	3.9	67	86	1	367	38	13	18	29	1.89
75118--75225	36	3.2	34	68	24	84	43	13	15	26	1.85
75034--75295	133	2.0	133	90	1	418	38	13	18	29	1.89
75234--75309	36	2.1	35	82	2	89	35	11	23	28	1.90
75167--75412	102	2.4	103	77	8	243	37	12	19	30	1.89
75353--75461	36	2.9	36	80	12	114	33	15	21	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77913--77968	20	2.9	18	80	15	58	3	16	1	78	0.97
77941--77984	13	3.2	13	75	12	52	0	20	4	75	0.98
77939--77984	15	3.2	15	81	12	69	0	19	4	76	0.96
82060--82457	130	3.1	130	85	5	524	45	15	16	22	1.85
82425--82489	29	2.2	29	79	15	80	50	4	18	26	1.66
83510--83615	40	2.6	42	78	6	117	39	14	14	32	1.85
83404--83606	108	1.9	108	84	2	273	35	14	17	31	1.91
89428--89457	3	10.3	3	92	7	53	70	0	30	0	0.88
90149--90177	5	5.8	5	100	0	58	41	0	0	58	0.98
90547--90602	2	28.5	2	96	3	105	50	0	0	50	1.00
90885--90956	15	4.1	18	73	18	62	58	2	0	38	1.13
90924--90987	28	2.3	27	82	15	76	62	1	0	35	1.05
91097--91133	17	2.2	17	95	0	65	29	10	13	45	1.77
91103--91143	17	2.4	17	87	0	55	29	12	14	43	1.82
93261--93313	28	2.0	26	85	7	70	52	0	3	43	1.19
93595--93627	2	16.5	2	100	0	66	51	0	0	48	1.00
93562--93666	52	2.0	51	83	5	131	46	1	5	45	1.37
93609--93706	38	2.6	39	78	4	128	47	1	5	45	1.31
93685--93711	2	13.5	2	100	0	54	51	0	0	48	1.00
101986--102043	17	3.4	17	71	21	57	20	13	5	60	1.53
101986--102055	35	2.0	35	94	2	124	22	15	4	57	1.56
103284--103380	49	2.0	48	94	4	169	24	17	9	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103837--104036	107	1.9	107	89	5	314	37	26	12	24	1.91
104632--104672	2	20.5	2	100	0	82	51	0	0	48	1.00
104650--104977	37	8.9	37	84	7	402	45	2	7	44	1.46
104648--104977	76	4.4	74	87	7	386	45	2	7	44	1.46
104940--104982	23	2.0	21	86	9	59	44	0	4	51	1.22
106352--106393	16	2.6	17	85	7	61	23	4	2	69	1.20

Tables:   1

The End!