genome.fa.s4204.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004204.1 Hibiscus syriacus cultivar Beakdansim tig00009201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73689

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742--785	10	4.5	10	82	5	54	75	0	6	18	1.02
2745--2795	24	2.2	25	86	10	72	43	1	3	50	1.31
3482--3557	21	3.4	22	72	20	68	26	3	2	67	1.22
3690--3731	21	2.0	22	86	13	61	23	2	9	64	1.35
3734--3768	18	1.9	18	94	0	61	31	2	0	65	1.07
3805--3831	2	13.5	2	100	0	54	48	0	0	51	1.00
8246--8315	29	2.3	30	76	18	74	77	8	12	1	1.06
9092--9208	22	5.3	22	96	0	198	41	26	11	20	1.87
10029--11715	106	15.9	106	92	0	2739	34	24	17	23	1.96
12427--12531	37	2.8	37	88	0	156	40	15	15	29	1.88
13019--13072	21	2.7	20	78	18	58	33	3	0	62	1.12
13016--13053	19	2.0	19	85	10	51	31	2	0	65	1.06
13204--13245	21	2.0	22	86	13	61	23	2	9	64	1.35
13252--13287	18	1.9	19	88	5	56	30	5	0	63	1.17
13364--13404	15	2.6	16	81	14	50	14	7	0	78	0.96
13353--13430	29	2.7	28	76	7	77	16	8	0	74	1.06
15528--15670	71	2.0	71	98	0	277	30	6	24	38	1.80
19348--19559	5	40.8	5	67	24	70	36	2	5	55	1.35
19354--19550	7	28.1	7	70	18	101	36	2	5	55	1.35
19354--19560	29	7.3	29	71	19	111	36	1	5	56	1.33
19354--19559	16	12.5	16	71	17	95	36	1	5	55	1.34
19511--19560	3	16.3	3	76	19	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19490--19557	26	2.7	26	80	17	81	35	0	1	63	1.04
24050--24097	24	2.0	24	95	0	87	31	29	18	20	1.97
27268--27304	2	18.5	2	100	0	74	48	0	0	51	1.00
31521--31573	26	2.1	26	82	6	65	52	18	16	11	1.73
33134--33245	58	1.9	59	94	1	199	39	14	7	39	1.73
34243--34279	18	2.0	20	89	10	60	35	5	2	56	1.36
34332--34689	191	1.9	192	86	2	524	38	11	11	38	1.77
34819--34891	22	3.2	23	62	27	55	35	8	19	36	1.81
34823--34912	46	2.0	46	100	0	180	36	6	17	38	1.76
35098--35327	5	47.4	5	66	25	88	37	1	3	56	1.28
35104--35326	7	31.4	7	71	19	126	38	1	4	56	1.27
35169--35304	27	4.9	28	74	15	70	35	0	4	59	1.23
35136--35327	38	5.2	35	73	18	119	37	1	4	57	1.25
35251--35324	3	25.0	3	72	22	59	37	0	0	62	0.96
35104--35327	19	11.3	21	66	24	96	37	1	4	56	1.26
36931--36998	18	3.6	18	73	11	73	23	13	25	38	1.91
36911--37036	39	3.3	38	80	11	141	28	11	23	36	1.90
36930--37056	38	3.3	38	89	1	182	29	11	25	33	1.90
36988--37057	20	3.6	20	66	14	65	35	10	24	30	1.88
48701--48745	18	2.5	18	92	0	72	17	35	15	31	1.92
49683--49810	65	2.0	65	83	9	163	37	21	11	29	1.89
49750--49958	81	2.6	81	84	2	251	37	16	13	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54325--54366	22	2.0	22	95	4	77	54	16	0	28	1.42
56227--56260	17	1.9	18	94	5	61	0	11	0	88	0.52
56227--56269	9	4.7	9	88	11	61	0	11	2	86	0.67
56232--56270	17	2.3	17	86	8	53	0	12	2	84	0.72
56694--56728	14	2.5	14	90	0	52	40	0	0	60	0.97
59001--59040	18	2.2	19	86	4	55	45	2	2	50	1.28
61652--61800	76	1.9	77	87	1	219	51	2	6	38	1.42
66721--66753	13	2.5	13	95	0	57	63	0	3	33	1.10
68680--68727	25	2.0	23	84	8	60	29	25	14	31	1.95
68850--68895	22	2.0	21	84	12	56	36	8	0	54	1.32
68899--68998	20	4.9	20	82	12	82	48	7	0	45	1.30
68905--68958	2	27.5	2	96	3	101	48	0	0	51	1.00
71206--71238	3	11.0	3	100	0	66	33	0	0	66	0.92
71706--71763	18	3.2	18	68	22	57	65	1	18	13	1.35

Tables:   1

The End!